CL:0000775: Difference between revisions
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|located_in= | |located_in= | ||
|name=neutrophil | |name=neutrophil | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:36, 12 September 2014
| Name: | neutrophil | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464] | ||
| Xrefs: |
| ||
| Synonyms: |
"neutrocyte" EXACT [] "neutrophil leucocyte" EXACT [] "neutrophil leukocyte" EXACT [] "neutrophilic leucocyte" EXACT [] "neutrophilic leukocyte" EXACT [] "PMN" BROAD [] "poly" BROAD [] "polymorphonuclear leucocyte" BROAD [] "polymorphonuclear leukocyte" BROAD [] "polymorphonuclear neutrophil" BROAD [] "polynuclear neutrophilic leucocyte" BROAD [] "polynuclear neutrophilic leukocyte" BROAD [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000094(granulocyte) |
|---|
Children
| derives from: | FF:0000122 (human neutrophil sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11233-116C9 (Neutrophils, donor1)
- 11314-117C9 (Neutrophils, donor2)
- 11390-118C4 (Neutrophils, donor3)
- 12133-128D9 (neutrophil PMN, donor1)
- 12137-128E4 (neutrophil PMN, donor2)
- 12141-128E8 (neutrophil PMN, donor3)
Mouse (Mus musculus)
- 11233-116C9 (Neutrophils, donor1)
- 11314-117C9 (Neutrophils, donor2)
- 11390-118C4 (Neutrophils, donor3)
- 12133-128D9 (neutrophil PMN, donor1)
- 12137-128E4 (neutrophil PMN, donor2)
- 12141-128E8 (neutrophil PMN, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000775 (neutrophil), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE1:Hg19::chr1:17418980..17418990,-#_871af0b89492d5c9d15104e0740c9bfc | p@chr1:17418980..17418990, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr7:149462556..149462563,-#_871af0b89492d5c9d15104e0740c9bfc | p@chr7:149462556..149462563, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr7:149462556..149462563,-#_871af0b89492d5c9d15104e0740c9bfc | p@chr7:149462556..149462563, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr1:17418980..17418990,-#_871af0b89492d5c9d15104e0740c9bfc | p@chr1:17418980..17418990, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr2:102608625..102608637,-#_871af0b89492d5c9d15104e0740c9bfc | p@chr2:102608625..102608637, - |
| 2.79e-195 | FFCP PHASE2:Hg19::chr2:102608625..102608637,-#_871af0b89492d5c9d15104e0740c9bfc | p@chr2:102608625..102608637, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr2:103043089..103043100,+#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr2:103043089..103043100, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:105904960..105904973,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105904960..105904973, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:105917805..105917815,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105917805..105917815, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:105917805..105917815,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105917805..105917815, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr8:142317989..142317992,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr8:142317989..142317992, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:105904960..105904973,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105904960..105904973, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:105921112..105921121,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105921112..105921121, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:112062506..112062509,+#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:112062506..112062509, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr6:11360439..11360452,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr6:11360439..11360452, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr2:70274655..70274660,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr2:70274655..70274660, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr2:103043089..103043100,+#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr2:103043089..103043100, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr10:89648443..89648447,+#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr10:89648443..89648447, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:105903055..105903058,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105903055..105903058, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr6:11351100..11351118,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr6:11351100..11351118, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:105921112..105921121,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105921112..105921121, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:105903055..105903058,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105903055..105903058, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr8:142317989..142317992,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr8:142317989..142317992, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:105917431..105917440,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105917431..105917440, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr6:11332062..11332081,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr6:11332062..11332081, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr10:89648443..89648447,+#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr10:89648443..89648447, + |
| 3.27e-147 | FFCP PHASE1:Hg19::chr2:70274655..70274660,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr2:70274655..70274660, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr6:11351100..11351118,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr6:11351100..11351118, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr6:11332062..11332081,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr6:11332062..11332081, - |
| 3.27e-147 | FFCP PHASE2:Hg19::chr7:105917431..105917440,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:105917431..105917440, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr7:112062506..112062509,+#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr7:112062506..112062509, + |
| 3.27e-147 | FFCP PHASE2:Hg19::chr6:11360439..11360452,-#_ea26c3aa3a24283383db7de1f1f0b96a | p@chr6:11360439..11360452, - |
| 5.41e-147 | FFCP PHASE1:Hg19::chr7:112062482..112062489,+#_d0cedca3613c3c25466d5d4191032553 | p@chr7:112062482..112062489, + |
| 5.41e-147 | FFCP PHASE2:Hg19::chr7:112062482..112062489,+#_d0cedca3613c3c25466d5d4191032553 | p@chr7:112062482..112062489, + |
| 8.93e-147 | FFCP PHASE2:Hg19::chr1:21904038..21904043,+#_1b38279c2b2b8ba34492f2f6d8721b99 | p@chr1:21904038..21904043, + |
| 8.93e-147 | FFCP PHASE1:Hg19::chr21:35570862..35570865,+#_1b38279c2b2b8ba34492f2f6d8721b99 | p@chr21:35570862..35570865, + |
| 8.93e-147 | FFCP PHASE1:Hg19::chr3:134309990..134309996,-#_1b38279c2b2b8ba34492f2f6d8721b99 | p@chr3:134309990..134309996, - |
| 8.93e-147 | FFCP PHASE2:Hg19::chr3:134309990..134309996,-#_1b38279c2b2b8ba34492f2f6d8721b99 | p@chr3:134309990..134309996, - |
| 8.93e-147 | FFCP PHASE2:Hg19::chr21:35570862..35570865,+#_1b38279c2b2b8ba34492f2f6d8721b99 | p@chr21:35570862..35570865, + |
| 8.93e-147 | FFCP PHASE1:Hg19::chr1:21904038..21904043,+#_1b38279c2b2b8ba34492f2f6d8721b99 | p@chr1:21904038..21904043, + |
| 1.47e-146 | FFCP PHASE1:Hg19::chr17:57785324..57785365,+#_41e4a750d9194fa8c35e733953dbd02d | p@chr17:57785324..57785365, + |
| 1.47e-146 | FFCP PHASE2:Hg19::chr17:57785324..57785365,+#_41e4a750d9194fa8c35e733953dbd02d | p@chr17:57785324..57785365, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr2:121011894..121011895,-#_eba313c3be7857868bf130e7c628ed38 | p@chr2:121011894..121011895, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr2:121011894..121011895,-#_eba313c3be7857868bf130e7c628ed38 | p@chr2:121011894..121011895, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr20:1545770..1545777,-#_79d541ddab00744ff3a871f84e974b9a | p@chr20:1545770..1545777, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr1:208712283..208712291,+#_79d541ddab00744ff3a871f84e974b9a | p@chr1:208712283..208712291, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr20:1545770..1545777,-#_79d541ddab00744ff3a871f84e974b9a | p@chr20:1545770..1545777, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr2:143908003..143908010,-#_79d541ddab00744ff3a871f84e974b9a | p@chr2:143908003..143908010, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr8:97657886..97657892,+#_79d541ddab00744ff3a871f84e974b9a | p@chr8:97657886..97657892, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr7:112062470..112062479,+#_79d541ddab00744ff3a871f84e974b9a | p@chr7:112062470..112062479, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr7:105917490..105917499,-#_79d541ddab00744ff3a871f84e974b9a | p@chr7:105917490..105917499, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr7:102071349..102071355,-#_79d541ddab00744ff3a871f84e974b9a | p@chr7:102071349..102071355, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr7:105917490..105917499,-#_79d541ddab00744ff3a871f84e974b9a | p@chr7:105917490..105917499, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr2:143908003..143908010,-#_79d541ddab00744ff3a871f84e974b9a | p@chr2:143908003..143908010, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr16:3107107..3107117,+#_79d541ddab00744ff3a871f84e974b9a | p@chr16:3107107..3107117, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr7:112062470..112062479,+#_79d541ddab00744ff3a871f84e974b9a | p@chr7:112062470..112062479, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr20:55012583..55012585,+#_79d541ddab00744ff3a871f84e974b9a | p@chr20:55012583..55012585, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr6:11313936..11313940,-#_79d541ddab00744ff3a871f84e974b9a | p@chr6:11313936..11313940, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr16:3107107..3107117,+#_79d541ddab00744ff3a871f84e974b9a | p@chr16:3107107..3107117, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr1:208712283..208712291,+#_79d541ddab00744ff3a871f84e974b9a | p@chr1:208712283..208712291, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr8:97657886..97657892,+#_79d541ddab00744ff3a871f84e974b9a | p@chr8:97657886..97657892, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr20:55012583..55012585,+#_79d541ddab00744ff3a871f84e974b9a | p@chr20:55012583..55012585, + |
| 2.33e-118 | FFCP PHASE2:Hg19::chr19:14774330..14774343,-#_79d541ddab00744ff3a871f84e974b9a | p@chr19:14774330..14774343, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr7:102071349..102071355,-#_79d541ddab00744ff3a871f84e974b9a | p@chr7:102071349..102071355, - |
| 2.33e-118 | FFCP PHASE2:Hg19::chr1:36938272..36938282,-#_79d541ddab00744ff3a871f84e974b9a | p35@CSF3R |
| 2.33e-118 | FFCP PHASE2:Hg19::chr6:11313936..11313940,-#_79d541ddab00744ff3a871f84e974b9a | p@chr6:11313936..11313940, - |
| 2.33e-118 | FFCP PHASE1:Hg19::chr1:36938272..36938282,-#_79d541ddab00744ff3a871f84e974b9a | p35@CSF3R |
| 2.33e-118 | FFCP PHASE1:Hg19::chr19:14774330..14774343,-#_79d541ddab00744ff3a871f84e974b9a | p@chr19:14774330..14774343, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr20:56861864..56861875,-#_8101d934d0e9dad8c1f55052b5ef3c22 | p@chr20:56861864..56861875, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr2:120967895..120967903,-#_8101d934d0e9dad8c1f55052b5ef3c22 | p@chr2:120967895..120967903, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr20:56861880..56861893,-#_8101d934d0e9dad8c1f55052b5ef3c22 | p@chr20:56861880..56861893, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr20:56861864..56861875,-#_8101d934d0e9dad8c1f55052b5ef3c22 | p@chr20:56861864..56861875, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr2:120967895..120967903,-#_8101d934d0e9dad8c1f55052b5ef3c22 | p@chr2:120967895..120967903, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr20:56861880..56861893,-#_8101d934d0e9dad8c1f55052b5ef3c22 | p@chr20:56861880..56861893, - |
| 5.2e-118 | FFCP PHASE2:Hg19::chr2:103039548..103039555,+#_03d495d6c6a946792b82098cf3997b11 | p9@IL18RAP |
| 5.2e-118 | FFCP PHASE2:Hg19::chr8:97669948..97669957,+#_03d495d6c6a946792b82098cf3997b11 | p@chr8:97669948..97669957, + |
| 5.2e-118 | FFCP PHASE2:Hg19::chr17:80187468..80187472,+#_03d495d6c6a946792b82098cf3997b11 | p@chr17:80187468..80187472, + |
| 5.2e-118 | FFCP PHASE2:Hg19::chr12:8720206..8720211,-#_03d495d6c6a946792b82098cf3997b11 | p4@ENST00000542819 |
| 5.2e-118 | FFCP PHASE1:Hg19::chr12:8720206..8720211,-#_03d495d6c6a946792b82098cf3997b11 | p4@ENST00000542819 |
| 5.2e-118 | FFCP PHASE1:Hg19::chr8:97669948..97669957,+#_03d495d6c6a946792b82098cf3997b11 | p@chr8:97669948..97669957, + |
| 5.2e-118 | FFCP PHASE1:Hg19::chr2:103039548..103039555,+#_03d495d6c6a946792b82098cf3997b11 | p9@IL18RAP |
| 5.2e-118 | FFCP PHASE1:Hg19::chr1:27155357..27155367,+#_03d495d6c6a946792b82098cf3997b11 | p@chr1:27155357..27155367, + |
| 5.2e-118 | FFCP PHASE2:Hg19::chr1:27155357..27155367,+#_03d495d6c6a946792b82098cf3997b11 | p@chr1:27155357..27155367, + |
| 5.2e-118 | FFCP PHASE1:Hg19::chr2:103039589..103039596,+#_03d495d6c6a946792b82098cf3997b11 | p8@IL18RAP |
| 5.2e-118 | FFCP PHASE1:Hg19::chr17:80187468..80187472,+#_03d495d6c6a946792b82098cf3997b11 | p@chr17:80187468..80187472, + |
| 5.2e-118 | FFCP PHASE2:Hg19::chr2:103039589..103039596,+#_03d495d6c6a946792b82098cf3997b11 | p8@IL18RAP |
| 7.78e-118 | FFCP PHASE1:Hg19::chr13:21050019..21050027,-#_884a33c99b0459304383465557a433e9 | p@chr13:21050019..21050027, - |
| 7.78e-118 | FFCP PHASE2:Hg19::chr13:21050019..21050027,-#_884a33c99b0459304383465557a433e9 | p@chr13:21050019..21050027, - |
| 7.78e-118 | FFCP PHASE2:Hg19::chr14:88469399..88469404,-#_884a33c99b0459304383465557a433e9 | p@chr14:88469399..88469404, - |
| 7.78e-118 | FFCP PHASE1:Hg19::chr14:88469399..88469404,-#_884a33c99b0459304383465557a433e9 | p@chr14:88469399..88469404, - |
| 1.16e-117 | FFCP PHASE1:Hg19::chr1:208712347..208712354,+#_b2a05e79e896353c747e38436ad6c1f7 | p@chr1:208712347..208712354, + |
| 1.16e-117 | FFCP PHASE2:Hg19::chr21:37502917..37502925,+#_b2a05e79e896353c747e38436ad6c1f7 | p5@MEMO1P1 |
| 1.16e-117 | FFCP PHASE2:Hg19::chr2:120967889..120967892,-#_b2a05e79e896353c747e38436ad6c1f7 | p@chr2:120967889..120967892, - |
| 1.16e-117 | FFCP PHASE1:Hg19::chr21:37502917..37502925,+#_b2a05e79e896353c747e38436ad6c1f7 | p5@MEMO1P1 |
| 1.16e-117 | FFCP PHASE2:Hg19::chr1:208712347..208712354,+#_b2a05e79e896353c747e38436ad6c1f7 | p@chr1:208712347..208712354, + |
| 1.16e-117 | FFCP PHASE2:Hg19::chr2:102618480..102618529,+#_b2a05e79e896353c747e38436ad6c1f7 | p11@IL1R2 |
| 1.16e-117 | FFCP PHASE2:Hg19::chr2:70246139..70246146,-#_b2a05e79e896353c747e38436ad6c1f7 | p@chr2:70246139..70246146, - |
| 1.16e-117 | FFCP PHASE1:Hg19::chr2:70246139..70246146,-#_b2a05e79e896353c747e38436ad6c1f7 | p@chr2:70246139..70246146, - |
| 1.16e-117 | FFCP PHASE2:Hg19::chr2:103106370..103106380,+#_b2a05e79e896353c747e38436ad6c1f7 | p@chr2:103106370..103106380, + |
| 1.16e-117 | FFCP PHASE1:Hg19::chr2:102618480..102618529,+#_b2a05e79e896353c747e38436ad6c1f7 | p11@IL1R2 |
