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{{CL
{{CL
|id=CL:0000723
|alt_id=
|name=somatic stem cell
|namespace=cell
|def="A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103]
|xref=FMA:63368
|is_a=CL:0000034;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000723
|is_a=CL:0000034 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=somatic stem cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:63368
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:somatic stem cell
Namespace:FANTOM
Definition:"A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103]
Xrefs:
links:
FMA:63368


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000034(stem cell),CL:0002371(somatic cell)



Children


is a:CL:0000035 (single fate stem cell),CL:0000048 (multi fate stem cell),CL:0002248 (pluripotent stem cell),CL:1000428 (stem cell of epidermis)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000723 (somatic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.78e-51FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_0c48908a2d0ddbb83cfc211672e9ed3cp2@EMP3
2.78e-51FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_0c48908a2d0ddbb83cfc211672e9ed3cp2@EMP3
9.5e-49FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_7f4a7f8625ab92e506ed75223f4da16ep2@ITGA4
9.5e-49FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_7f4a7f8625ab92e506ed75223f4da16ep2@ITGA4
1.49e-48FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_3ba5f27597e8c87549d1f5b073fa37b8p2@SEC22B
1.49e-48FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_3ba5f27597e8c87549d1f5b073fa37b8p2@SEC22B
1.29e-46FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_ce5f2577242b262da853655144701482p1@DOK1
1.29e-46FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_ce5f2577242b262da853655144701482p1@DOK1
1.42e-44FFCP PHASE2:Mm9::chr1:146456236..146456244,-#_c4810e77f136ec6dc8d287d77abb8063p1@ENSMUST00000157471
1.42e-44FFCP PHASE1:Mm9::chr1:146456236..146456244,-#_c4810e77f136ec6dc8d287d77abb8063p1@ENSMUST00000157471
1.2e-43FFCP PHASE2:Mm9::chr3:32910877..32910881,+#_91221acc49bd0f729dcf6a425d0a3a16p1@ENSMUST00000122716
1.2e-43FFCP PHASE1:Mm9::chr3:32910877..32910881,+#_91221acc49bd0f729dcf6a425d0a3a16p1@ENSMUST00000122716
5.0e-43FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_ef3a8da15621dc6f58552065157d200ap1@ACTR3
5.0e-43FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_ef3a8da15621dc6f58552065157d200ap1@ACTR3
2.32e-42FFCP PHASE2:Mm9::chr19:18807230..18807233,+#_c08038b1c15054efc5c6fd51454f3286p1@ENSMUST00000083007
2.32e-42FFCP PHASE1:Mm9::chr19:18807230..18807233,+#_c08038b1c15054efc5c6fd51454f3286p1@ENSMUST00000083007
4.79e-42FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_746e8a3cc7d303a12f7025b18da301f3p1@ARSB
4.79e-42FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_746e8a3cc7d303a12f7025b18da301f3p1@ARSB
7.27e-42FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_b8fb3a437fcf233516bdb1f1ca0cc71fp3@EMP3
7.27e-42FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_b8fb3a437fcf233516bdb1f1ca0cc71fp3@EMP3
1.17e-41FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_ccb885aa6f408698bdfc960e29826e8ep2@CLIC1
1.17e-41FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_ccb885aa6f408698bdfc960e29826e8ep2@CLIC1
2.16e-41FFCP PHASE1:Hg19::chr11:504446..504486,-#_151ceb9d7c934c49869e055cb8282842p4@RNH1
2.16e-41FFCP PHASE2:Hg19::chr11:504446..504486,-#_151ceb9d7c934c49869e055cb8282842p4@RNH1
5.63e-40FFCP PHASE1:Mm9::chr4:32085713..32085717,-#_874aab79d40e9f19a3bd1fcee5931806p1@ENSMUST00000122491
5.63e-40FFCP PHASE2:Mm9::chr4:32085713..32085717,-#_874aab79d40e9f19a3bd1fcee5931806p1@ENSMUST00000122491
9.7e-40FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_33c1544d9700385924f2b1ae8f22d918p1@ADCY7
9.7e-40FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_33c1544d9700385924f2b1ae8f22d918p1@ADCY7
1.07e-39FFCP PHASE1:Hg19::chr1:183604794..183604908,-#_409f45230a3c779ae01846b6057398ccp1@ARPC5
1.07e-39FFCP PHASE2:Hg19::chr1:183604794..183604908,-#_409f45230a3c779ae01846b6057398ccp1@ARPC5
3.99e-39FFCP PHASE2:Mm9::chr3:19460250..19460260,+#_9ac6447388926162036e3172723ca81ap1@ENSMUST00000083241
3.99e-39FFCP PHASE1:Mm9::chr3:19460250..19460260,+#_9ac6447388926162036e3172723ca81ap1@ENSMUST00000083241
5.79e-39FFCP PHASE1:Mm9::chr11:48596086..48596090,+#_cf04a3ba7c72e04df18928f636f279b2p@chr11:48596086..48596090, +
5.79e-39FFCP PHASE2:Mm9::chr11:48596086..48596090,+#_cf04a3ba7c72e04df18928f636f279b2p@chr11:48596086..48596090, +
2.16e-38FFCP PHASE1:Mm9::chr16:72264646..72264650,-#_955bab6bc979ea5cd209e2568074d26fp@chr16:72264646..72264650, -
2.16e-38FFCP PHASE2:Mm9::chr16:72264646..72264650,-#_955bab6bc979ea5cd209e2568074d26fp@chr16:72264646..72264650, -
4.54e-38FFCP PHASE1:Mm9::chr4:131826124..131826129,-#_ad39f2ce21aa2cc175bb3bf100c39de2p1@ENSMUST00000104135
4.54e-38FFCP PHASE2:Mm9::chr4:131826124..131826129,-#_ad39f2ce21aa2cc175bb3bf100c39de2p1@ENSMUST00000104135
5.72e-38FFCP PHASE2:Mm9::chr19:26334980..26334985,-#_14d4ad89b6ffd795dab722a84816babep1@ENSMUST00000122640
5.72e-38FFCP PHASE1:Mm9::chr19:26334980..26334985,-#_14d4ad89b6ffd795dab722a84816babep1@ENSMUST00000122640
5.74e-38FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_475695113ee37cd749f1288f7226ebb7p3@ANPEP
5.74e-38FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_475695113ee37cd749f1288f7226ebb7p3@ANPEP
6.45e-38FFCP PHASE2:Hg19::chr12:75874580..75874611,+#_77036bc2eb553887d7c4b170de2c7e64p2@GLIPR1
6.45e-38FFCP PHASE1:Hg19::chr12:75874580..75874611,+#_77036bc2eb553887d7c4b170de2c7e64p2@GLIPR1
1.1e-37FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_e1e58476bdeefca341a4175f646d0302p1@ITGA4
1.1e-37FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_e1e58476bdeefca341a4175f646d0302p1@ITGA4
4.91e-37FFCP PHASE1:Hg19::chr11:504867..504925,-#_f4520e7837b2ef2ba786a7d2f6f68776p3@RNH1
4.91e-37FFCP PHASE2:Hg19::chr11:504867..504925,-#_f4520e7837b2ef2ba786a7d2f6f68776p3@RNH1
9.41e-37FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_8715feb4725a64f1b8d2a4f19b50cbf3p1@ADPGK
9.41e-37FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_8715feb4725a64f1b8d2a4f19b50cbf3p1@ADPGK
1.33e-36FFCP PHASE2:Mm9::chr3:72925786..72925790,+#_a07d62bc0f939c64d5607d8d48b24d3ep@chr3:72925786..72925790, +
1.33e-36FFCP PHASE1:Mm9::chr3:72925786..72925790,+#_a07d62bc0f939c64d5607d8d48b24d3ep@chr3:72925786..72925790, +
1.48e-36FFCP PHASE2:Hg19::chr12:110888103..110888172,-#_1a218e86d0f5311eafef0d461d6b290dp1@ARPC3
1.48e-36FFCP PHASE1:Hg19::chr12:110888103..110888172,-#_1a218e86d0f5311eafef0d461d6b290dp1@ARPC3
4.77e-36FFCP PHASE2:Mm9::chr14:106660467..106660471,-#_09f1ea1d06a977776b0493f07aefb56dp1@ENSMUST00000083259
4.77e-36FFCP PHASE1:Mm9::chr14:106660467..106660471,-#_09f1ea1d06a977776b0493f07aefb56dp1@ENSMUST00000083259
5.63e-36FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_fe1159d2aadf1ded7a2826b94472bcf4p4@ROCK1
5.63e-36FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_fe1159d2aadf1ded7a2826b94472bcf4p4@ROCK1
6.93e-36FFCP PHASE2:Hg19::chr1:46016703..46016755,+#_fcb1a508311dac057a42d4e67ee66b80p2@AKR1A1
6.93e-36FFCP PHASE1:Hg19::chr1:46016703..46016755,+#_fcb1a508311dac057a42d4e67ee66b80p2@AKR1A1
7.68e-36FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_940b4d9aebd6a5d03f4d2141cdfcb96cp1@ANPEP
7.68e-36FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_940b4d9aebd6a5d03f4d2141cdfcb96cp1@ANPEP
8.08e-36FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_8663f5472807c8b32a2c7402c337338bp2@DDOST
8.08e-36FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_8663f5472807c8b32a2c7402c337338bp2@DDOST
1.33e-35FFCP PHASE1:Mm9::chr10:104477319..104477348,+#_627c683cce30ca7ae0d8306645a3c2c2p1@ENSMUST00000082498
1.33e-35FFCP PHASE2:Mm9::chr10:104477319..104477348,+#_627c683cce30ca7ae0d8306645a3c2c2p1@ENSMUST00000082498
3.68e-35FFCP PHASE1:Hg19::chr2:102091566..102091581,-#_877c1a2881824b54bf87fcd371f20da9p1@RFX8
3.68e-35FFCP PHASE2:Hg19::chr2:102091566..102091581,-#_877c1a2881824b54bf87fcd371f20da9p1@RFX8
4.08e-35FFCP PHASE1:Hg19::chr11:504942..504959,-#_9a187166dd0cb4d77c8ca28e01a1e6e8p5@RNH1
4.08e-35FFCP PHASE2:Hg19::chr11:504942..504959,-#_9a187166dd0cb4d77c8ca28e01a1e6e8p5@RNH1
4.14e-35FFCP PHASE2:Hg19::chr9:35112376..35112395,-#_30bdd1db6024563b1a62f3f91789c6aep@chr9:35112376..35112395, -
4.14e-35FFCP PHASE1:Hg19::chr9:35112376..35112395,-#_30bdd1db6024563b1a62f3f91789c6aep@chr9:35112376..35112395, -
4.18e-35FFCP PHASE1:Mm9::chr5:115939562..115939592,-#_940273588e9413fdc84f105aba9527c9p@chr5:115939562..115939592, -
4.18e-35FFCP PHASE2:Mm9::chr5:115939562..115939592,-#_940273588e9413fdc84f105aba9527c9p@chr5:115939562..115939592, -
4.79e-35FFCP PHASE2:Mm9::chr5:115939465..115939467,+#_ca5f7cfa1ffe72d4c6899f171c2c1cd3p1@ENSMUST00000102044
4.79e-35FFCP PHASE1:Mm9::chr5:115939465..115939467,+#_ca5f7cfa1ffe72d4c6899f171c2c1cd3p1@ENSMUST00000102044
5.54e-35FFCP PHASE2:Hg19::chr10:17271909..17272033,-#_d2df03533fe5b80334ba137067e470b6p1@uc001iot.1
5.54e-35FFCP PHASE1:Hg19::chr10:17271909..17272033,-#_d2df03533fe5b80334ba137067e470b6p1@uc001iot.1
9.86e-35FFCP PHASE1:Hg19::chrX:48432892..48432916,+#_a29ea57de99e7771e08cf19f00b4cf36p1@RBM3
9.86e-35FFCP PHASE2:Hg19::chrX:48432892..48432916,+#_a29ea57de99e7771e08cf19f00b4cf36p1@RBM3
1.27e-34FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_aaa81e897b888cb49d78cd8eb0b518bbp1@SLC17A9
1.27e-34FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_aaa81e897b888cb49d78cd8eb0b518bbp1@SLC17A9
1.48e-34FFCP PHASE2:Mm9::chr11:68834407..68834410,+#_bde1850e4ecffc8882f604a2f5fe5c54p@chr11:68834407..68834410, +
1.48e-34FFCP PHASE1:Mm9::chr11:68834407..68834410,+#_bde1850e4ecffc8882f604a2f5fe5c54p@chr11:68834407..68834410, +
3.9e-34FFCP PHASE2:Mm9::chr15:80870069..80870076,+#_9ff249a559a232a6816f757ff04e11adp1@ENSMUST00000082653
3.9e-34FFCP PHASE1:Mm9::chr15:80870069..80870076,+#_9ff249a559a232a6816f757ff04e11adp1@ENSMUST00000082653
4.09e-34FFCP PHASE1:Hg19::chr12:75874561..75874574,+#_a79694289e21a49beaaf80e05815336cp3@GLIPR1
4.09e-34FFCP PHASE2:Hg19::chr12:75874561..75874574,+#_a79694289e21a49beaaf80e05815336cp3@GLIPR1
5.21e-34FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_aad44e24b6724d2dc7c6aa6d5e3c53c1p@chr2:192542577..192542595, -
5.21e-34FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_aad44e24b6724d2dc7c6aa6d5e3c53c1p@chr2:192542577..192542595, -
7.39e-34FFCP PHASE2:Hg19::chr12:75874525..75874549,+#_0f42e00e3b9f650ffd93a24e58857852p1@GLIPR1
7.39e-34FFCP PHASE1:Hg19::chr12:75874525..75874549,+#_0f42e00e3b9f650ffd93a24e58857852p1@GLIPR1
7.52e-34FFCP PHASE1:Mm9::chr2:3208787..3208789,-#_060f4dfa4fd852460945a3aeb3272edap1@ENSMUST00000082795
7.52e-34FFCP PHASE2:Mm9::chr2:3208787..3208789,-#_060f4dfa4fd852460945a3aeb3272edap1@ENSMUST00000082795
8.98e-34FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_0ffe7c02760babc1d44152362a8342f9p2@RASSF1
8.98e-34FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_0ffe7c02760babc1d44152362a8342f9p2@RASSF1
1.02e-33FFCP PHASE1:Hg19::chr14:73930324..73930350,-#_93733e89a8d7a0b4b96a919d766ad87cp2@NUMB
1.02e-33FFCP PHASE2:Hg19::chr14:73930324..73930350,-#_93733e89a8d7a0b4b96a919d766ad87cp2@NUMB
1.08e-33FFCP PHASE1:Hg19::chr21:26934434..26934452,+#_a04af738bc8ca926ba6aff3b861cf667p1@MIR155HG
1.08e-33FFCP PHASE2:Hg19::chr21:26934434..26934452,+#_a04af738bc8ca926ba6aff3b861cf667p1@MIR155HG

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