CL:0000682: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 12: | Line 12: | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=M cell | |name=M cell of gut | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003929 | |part_of=UBERON:0003929 | ||
Latest revision as of 16:35, 12 September 2014
| Name: | M cell of gut | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An absorptive cell of the gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes." [GOC:jb, GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: |
"M-cell" EXACT [] "microfold cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000473(defensive cell),CL:0000627(transporting cell),CL:0002251(epithelial cell of alimentary canal) |
|---|---|
| part_of: | UBERON:0003929(gut epithelium) |
Children
| derives from: | FF:0011159 (mouse GP2-positive M cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11845-124H9 (GP2+ M cell, pool1)
- 11846-124I1 (GP2+ M cell, pool2)
- 11847-124I2 (GP2+ M cell, pool3)
Mouse (Mus musculus)
- 11845-124H9 (GP2+ M cell, pool1)
- 11846-124I1 (GP2+ M cell, pool2)
- 11847-124I2 (GP2+ M cell, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000682 (M cell of gut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.35e-53 | FFCP PHASE2:Mm9::chr6:3437479..3437484,-#_5ffdfa673df7469cf842c6cb2d2ce0f6 | p@chr6:3437479..3437484, - |
| 7.35e-53 | FFCP PHASE1:Mm9::chr6:3437479..3437484,-#_5ffdfa673df7469cf842c6cb2d2ce0f6 | p@chr6:3437479..3437484, - |
| 1.65e-52 | FFCP PHASE2:Mm9::chr8:124945700..124945703,+#_db4436cf498678433d648a809f600cdf | p1@Il17c |
| 1.65e-52 | FFCP PHASE1:Mm9::chr8:124945700..124945703,+#_db4436cf498678433d648a809f600cdf | p1@Il17c |
| 1.65e-52 | FFCP PHASE2:Mm9::chr1:72247892..72247896,-#_db4436cf498678433d648a809f600cdf | p@chr1:72247892..72247896, - |
| 1.65e-52 | FFCP PHASE1:Mm9::chr1:72247892..72247896,-#_db4436cf498678433d648a809f600cdf | p@chr1:72247892..72247896, - |
| 4.58e-44 | FFCP PHASE2:Mm9::chr7:38968769..38968776,+#_0e0663c21e28afed52683e7a8f44967d | p10@1600014C10Rik |
| 4.58e-44 | FFCP PHASE1:Mm9::chr7:38968769..38968776,+#_0e0663c21e28afed52683e7a8f44967d | p10@1600014C10Rik |
| 6.41e-44 | FFCP PHASE1:Mm9::chr4:104940057..104940067,+#_a49a87d81218442ff6b28e4e4120b245 | p@chr4:104940057..104940067, + |
| 6.41e-44 | FFCP PHASE2:Mm9::chr4:104940057..104940067,+#_a49a87d81218442ff6b28e4e4120b245 | p@chr4:104940057..104940067, + |
| 8.97e-44 | FFCP PHASE2:Mm9::chr7:38969538..38969543,-#_47828f8efb2693d0df291fb1156664c3 | p@chr7:38969538..38969543, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr7:38969538..38969543,-#_47828f8efb2693d0df291fb1156664c3 | p@chr7:38969538..38969543, - |
| 4.15e-39 | FFCP PHASE1:Mm9::chr15:74647718..74647727,-#_527fbfc1af5dd70a703a040f800cae31 | p2@Gml |
| 4.15e-39 | FFCP PHASE2:Mm9::chr15:74647718..74647727,-#_527fbfc1af5dd70a703a040f800cae31 | p2@Gml |
| 1.17e-38 | FFCP PHASE2:Mm9::chr7:19152867..19152872,-#_ad37dd53e0954041498f2a3eb5af6dc3 | p5@Psg27 |
| 1.17e-38 | FFCP PHASE1:Mm9::chr7:19152867..19152872,-#_ad37dd53e0954041498f2a3eb5af6dc3 | p5@Psg27 |
| 2.09e-38 | FFCP PHASE1:Mm9::chr14:121693634..121693643,-#_2ad1d7c3c908ae1350e3f83cfeb9dfc8 | p@chr14:121693634..121693643, - |
| 2.09e-38 | FFCP PHASE2:Mm9::chr14:121693634..121693643,-#_2ad1d7c3c908ae1350e3f83cfeb9dfc8 | p@chr14:121693634..121693643, - |
| 4.98e-38 | FFCP PHASE2:Mm9::chr17:73681574..73681576,+#_3fa0ffcf5c756735e36d535a0e2aaeaa | p@chr17:73681574..73681576, + |
| 4.98e-38 | FFCP PHASE1:Mm9::chr17:73681574..73681576,+#_3fa0ffcf5c756735e36d535a0e2aaeaa | p@chr17:73681574..73681576, + |
| 6.64e-38 | FFCP PHASE2:Mm9::chr1:58810538..58810543,+#_abbe96a4ebe48b3d0db670d2c74ca648 | p@chr1:58810538..58810543, + |
| 6.64e-38 | FFCP PHASE1:Mm9::chr1:58810538..58810543,+#_abbe96a4ebe48b3d0db670d2c74ca648 | p@chr1:58810538..58810543, + |
| 1.18e-37 | FFCP PHASE1:Mm9::chr7:19152636..19152647,-#_f52bb65ef68465d104765b45afab13c7 | p3@Psg27 |
| 1.18e-37 | FFCP PHASE2:Mm9::chr7:19152636..19152647,-#_f52bb65ef68465d104765b45afab13c7 | p3@Psg27 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr17:41017293..41017307,-#_9edc7f3dabc2fc3e279be0fc48510cab | p@chr17:41017293..41017307, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr17:41017293..41017307,-#_9edc7f3dabc2fc3e279be0fc48510cab | p@chr17:41017293..41017307, - |
| 7.89e-34 | FFCP PHASE2:Mm9::chr11:59700717..59700721,+#_8759e833e78682ac1eca7132e60b8cfe | p@chr11:59700717..59700721, + |
| 7.89e-34 | FFCP PHASE2:Mm9::chr8:13351651..13351657,+#_8759e833e78682ac1eca7132e60b8cfe | p@chr8:13351651..13351657, + |
| 7.89e-34 | FFCP PHASE1:Mm9::chr11:59700717..59700721,+#_8759e833e78682ac1eca7132e60b8cfe | p@chr11:59700717..59700721, + |
| 7.89e-34 | FFCP PHASE1:Mm9::chr8:13351651..13351657,+#_8759e833e78682ac1eca7132e60b8cfe | p@chr8:13351651..13351657, + |
| 1.02e-33 | FFCP PHASE1:Mm9::chr15:58184398..58184415,-#_861f189895222b3d984a1965178d68d7 | p@chr15:58184398..58184415, - |
| 1.02e-33 | FFCP PHASE2:Mm9::chr15:58184398..58184415,-#_861f189895222b3d984a1965178d68d7 | p@chr15:58184398..58184415, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr7:6120193..6120204,-#_965de4e6c67b378a2421dc29ed6d6afb | p@chr7:6120193..6120204, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr7:6120193..6120204,-#_965de4e6c67b378a2421dc29ed6d6afb | p@chr7:6120193..6120204, - |
| 1.69e-33 | FFCP PHASE1:Mm9::chr16:57199200..57199210,-#_0cfc9603cc102e8fb529cfe32a6d35fa | p@chr16:57199200..57199210, - |
| 1.69e-33 | FFCP PHASE2:Mm9::chr16:57199200..57199210,-#_0cfc9603cc102e8fb529cfe32a6d35fa | p@chr16:57199200..57199210, - |
| 2.18e-33 | FFCP PHASE1:Mm9::chr11:54787273..54787303,-#_8612f2f3c11c7425ea9f727780dfc532 | p@chr11:54787273..54787303, - |
| 2.18e-33 | FFCP PHASE2:Mm9::chr11:54787273..54787303,-#_8612f2f3c11c7425ea9f727780dfc532 | p@chr11:54787273..54787303, - |
| 2.18e-33 | FFCP PHASE2:Mm9::chr1:195129567..195129580,+#_8612f2f3c11c7425ea9f727780dfc532 | p8@Lamb3 |
| 2.18e-33 | FFCP PHASE1:Mm9::chr1:195129567..195129580,+#_8612f2f3c11c7425ea9f727780dfc532 | p8@Lamb3 |
| 2.8e-33 | FFCP PHASE1:Mm9::chr3:103636771..103636777,+#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr3:103636771..103636777, + |
| 2.8e-33 | FFCP PHASE1:Mm9::chr7:19110105..19110113,-#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr7:19110105..19110113, - |
| 2.8e-33 | FFCP PHASE2:Mm9::chr3:103636771..103636777,+#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr3:103636771..103636777, + |
| 2.8e-33 | FFCP PHASE1:Mm9::chr18:20714918..20714920,+#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr18:20714918..20714920, + |
| 2.8e-33 | FFCP PHASE2:Mm9::chr18:20714918..20714920,+#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr18:20714918..20714920, + |
| 2.8e-33 | FFCP PHASE2:Mm9::chr7:19110105..19110113,-#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr7:19110105..19110113, - |
| 2.8e-33 | FFCP PHASE1:Mm9::chr6:113589357..113589371,-#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr6:113589357..113589371, - |
| 2.8e-33 | FFCP PHASE2:Mm9::chr6:113589357..113589371,-#_e9ae44a4c4d92db088eab7b9ac351af3 | p@chr6:113589357..113589371, - |
| 3.61e-33 | FFCP PHASE2:Mm9::chr4:116494077..116494092,-#_1d8c93f2d766eb17eeeff14ec514f070 | p2@Hpdl |
| 3.61e-33 | FFCP PHASE2:Mm9::chr7:138141963..138141967,-#_1d8c93f2d766eb17eeeff14ec514f070 | p@chr7:138141963..138141967, - |
| 3.61e-33 | FFCP PHASE1:Mm9::chr4:116494077..116494092,-#_1d8c93f2d766eb17eeeff14ec514f070 | p2@Hpdl |
| 3.61e-33 | FFCP PHASE1:Mm9::chr7:138141963..138141967,-#_1d8c93f2d766eb17eeeff14ec514f070 | p@chr7:138141963..138141967, - |
| 4.64e-33 | FFCP PHASE1:Mm9::chr8:8533654..8533663,+#_153143f0cc874de657c3b2ab27663700 | p@chr8:8533654..8533663, + |
| 4.64e-33 | FFCP PHASE2:Mm9::chr8:8533654..8533663,+#_153143f0cc874de657c3b2ab27663700 | p@chr8:8533654..8533663, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr2:13415278..13415284,-#_d979d41aa131f194b5f2db15ee9818a4 | p@chr2:13415278..13415284, - |
| 7.68e-33 | FFCP PHASE1:Mm9::chr15:27670949..27670953,+#_d979d41aa131f194b5f2db15ee9818a4 | p@chr15:27670949..27670953, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr15:27670949..27670953,+#_d979d41aa131f194b5f2db15ee9818a4 | p@chr15:27670949..27670953, + |
| 7.68e-33 | FFCP PHASE1:Mm9::chr2:13415278..13415284,-#_d979d41aa131f194b5f2db15ee9818a4 | p@chr2:13415278..13415284, - |
| 1.16e-30 | FFCP PHASE2:Mm9::chr16:20695073..20695082,+#_96a7ecbbcbe90d5e616e3b060560ee11 | p11@Fam131a |
| 1.16e-30 | FFCP PHASE1:Mm9::chr16:20695073..20695082,+#_96a7ecbbcbe90d5e616e3b060560ee11 | p11@Fam131a |
| 1.83e-30 | FFCP PHASE1:Mm9::chr4:114914645..114914653,+#_aadbde217ee3194fc0561159ba7a3928 | p1@Cyp4a29-ps |
| 1.83e-30 | FFCP PHASE2:Mm9::chr4:114914645..114914653,+#_aadbde217ee3194fc0561159ba7a3928 | p1@Cyp4a29-ps |
| 2.3e-30 | FFCP PHASE2:Mm9::chr2:38469229..38469240,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr2:38469229..38469240, - |
| 2.3e-30 | FFCP PHASE1:Mm9::chr1:127346940..127346945,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr1:127346940..127346945, - |
| 2.3e-30 | FFCP PHASE1:Mm9::chr12:86479683..86479693,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr12:86479683..86479693, - |
| 2.3e-30 | FFCP PHASE2:Mm9::chr12:86479683..86479693,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr12:86479683..86479693, - |
| 2.3e-30 | FFCP PHASE1:Mm9::chr2:38469278..38469287,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr2:38469278..38469287, - |
| 2.3e-30 | FFCP PHASE2:Mm9::chr2:38469278..38469287,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr2:38469278..38469287, - |
| 2.3e-30 | FFCP PHASE2:Mm9::chr1:127346940..127346945,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr1:127346940..127346945, - |
| 2.3e-30 | FFCP PHASE1:Mm9::chr2:38469229..38469240,-#_67255c5e371f501624fa6ac4046a73b7 | p@chr2:38469229..38469240, - |
| 3.62e-30 | FFCP PHASE1:Mm9::chr16:20867079..20867087,+#_0bb5cee73ac8688009173bdb5087c5bb | p@chr16:20867079..20867087, + |
| 3.62e-30 | FFCP PHASE1:Mm9::chr2:11414279..11414290,-#_0bb5cee73ac8688009173bdb5087c5bb | p@chr2:11414279..11414290, - |
| 3.62e-30 | FFCP PHASE2:Mm9::chr16:20867079..20867087,+#_0bb5cee73ac8688009173bdb5087c5bb | p@chr16:20867079..20867087, + |
| 3.62e-30 | FFCP PHASE2:Mm9::chr13:32952878..32952890,+#_0bb5cee73ac8688009173bdb5087c5bb | p@chr13:32952878..32952890, + |
| 3.62e-30 | FFCP PHASE2:Mm9::chr9:56730814..56730824,-#_0bb5cee73ac8688009173bdb5087c5bb | p@chr9:56730814..56730824, - |
| 3.62e-30 | FFCP PHASE2:Mm9::chr12:21502374..21502380,+#_0bb5cee73ac8688009173bdb5087c5bb | p@chr12:21502374..21502380, + |
| 3.62e-30 | FFCP PHASE2:Mm9::chr2:11414279..11414290,-#_0bb5cee73ac8688009173bdb5087c5bb | p@chr2:11414279..11414290, - |
| 3.62e-30 | FFCP PHASE1:Mm9::chr9:56730814..56730824,-#_0bb5cee73ac8688009173bdb5087c5bb | p@chr9:56730814..56730824, - |
| 3.62e-30 | FFCP PHASE1:Mm9::chr12:21502374..21502380,+#_0bb5cee73ac8688009173bdb5087c5bb | p@chr12:21502374..21502380, + |
| 3.62e-30 | FFCP PHASE1:Mm9::chr13:32952878..32952890,+#_0bb5cee73ac8688009173bdb5087c5bb | p@chr13:32952878..32952890, + |
| 4.54e-30 | FFCP PHASE1:Mm9::chr6:82998517..82998522,+#_750fbab7c1e7e6d5a839cf5962c55657 | p2@Loxl3 |
| 4.54e-30 | FFCP PHASE2:Mm9::chr3:89041849..89041862,-#_750fbab7c1e7e6d5a839cf5962c55657 | p@chr3:89041849..89041862, - |
| 4.54e-30 | FFCP PHASE2:Mm9::chr6:82998517..82998522,+#_750fbab7c1e7e6d5a839cf5962c55657 | p2@Loxl3 |
| 4.54e-30 | FFCP PHASE1:Mm9::chr3:89041849..89041862,-#_750fbab7c1e7e6d5a839cf5962c55657 | p@chr3:89041849..89041862, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:104230353..104230354,-#_071b2322056e60329663048741cde51f | p@chr9:104230353..104230354, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr9:104230353..104230354,-#_071b2322056e60329663048741cde51f | p@chr9:104230353..104230354, - |
| 5.7e-30 | FFCP PHASE2:Mm9::chr17:37004048..37004055,-#_4cc817102e9ccce43ab9d9f38f391355 | p4@Trim15 |
| 5.7e-30 | FFCP PHASE2:Mm9::chr10:61337613..61337627,-#_4cc817102e9ccce43ab9d9f38f391355 | p@chr10:61337613..61337627, - |
| 5.7e-30 | FFCP PHASE1:Mm9::chr10:61337613..61337627,-#_4cc817102e9ccce43ab9d9f38f391355 | p@chr10:61337613..61337627, - |
| 5.7e-30 | FFCP PHASE1:Mm9::chr17:37004048..37004055,-#_4cc817102e9ccce43ab9d9f38f391355 | p4@Trim15 |
| 7.14e-30 | FFCP PHASE1:Mm9::chr17:24112500..24112507,-#_e7b2e854e6a2c1fae62219cf04ad6e71 | p3@Prss30 |
| 7.14e-30 | FFCP PHASE2:Mm9::chr17:24112500..24112507,-#_e7b2e854e6a2c1fae62219cf04ad6e71 | p3@Prss30 |
| 7.14e-30 | FFCP PHASE2:Mm9::chr10:79568311..79568322,-#_e7b2e854e6a2c1fae62219cf04ad6e71 | p@chr10:79568311..79568322, - |
| 7.14e-30 | FFCP PHASE1:Mm9::chr10:79568311..79568322,-#_e7b2e854e6a2c1fae62219cf04ad6e71 | p@chr10:79568311..79568322, - |
| 7.89e-30 | FFCP PHASE2:Mm9::chr10:126566696..126566708,+#_a50488b8b086d083c47275df9a398a93 | p@chr10:126566696..126566708, + |
| 7.89e-30 | FFCP PHASE1:Mm9::chr10:126566696..126566708,+#_a50488b8b086d083c47275df9a398a93 | p@chr10:126566696..126566708, + |
| 1.12e-29 | FFCP PHASE2:Mm9::chr8:25506263..25506266,+#_a630453c3e25d493c689ed68873dffd3 | p@chr8:25506263..25506266, + |
| 1.12e-29 | FFCP PHASE1:Mm9::chr8:25506263..25506266,+#_a630453c3e25d493c689ed68873dffd3 | p@chr8:25506263..25506266, + |
| 1.4e-29 | FFCP PHASE2:Mm9::chr5:66443992..66444014,-#_e5f365b4653f5571f03f01c965446816 | p@chr5:66443992..66444014, - |
| 1.4e-29 | FFCP PHASE1:Mm9::chr5:66443992..66444014,-#_e5f365b4653f5571f03f01c965446816 | p@chr5:66443992..66444014, - |
