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CL:0000322: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=pneumocyte
|name=pneumocyte
|namespace=cell
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0004821
|part_of=UBERON:0004821

Latest revision as of 16:32, 12 September 2014

Name:pneumocyte
Namespace:FANTOM
Definition:"An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144]
Xrefs:
links:

BTO:0000395

FMA:62499
Synonyms: "alveolar epithelial cell" EXACT []
"pneumonocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0010003(epithelial cell of alveolus of lung)
part_of:UBERON:0004821(pulmonary alveolus epithelium)



Children


derives from:FF:0000012 (human alveolar epithelial cell sample),FF:0102060 (bronchioalveolar carcinoma cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000322 (pneumocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data