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{{CL
{{CL
|id=CL:0000322
|alt_id=
|name=pneumocyte
|namespace=cell
|def="An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144]
|xref=BTO:0000395;;FMA:62499
|is_a=CL:0000082;;CL:0002202
|synonym="alveolar epithelial cell" EXACT [];;"pneumonocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000322
|is_a=CL:0010003
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0002299;;UBERON:0004821
|name=pneumocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004821
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="alveolar epithelial cell" EXACT [];;"pneumonocyte" EXACT []
|union_of=
|xref=BTO:0000395;;FMA:62499
}}
}}

Latest revision as of 16:32, 12 September 2014

Name:pneumocyte
Namespace:FANTOM
Definition:"An epithelial cell that lines the peripheral gas exchange region of the lungs of air-breathing vertebrates." [GOC:tfm, PMID:20054144]
Xrefs:
links:

BTO:0000395

FMA:62499
Synonyms: "alveolar epithelial cell" EXACT []
"pneumonocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0010003(epithelial cell of alveolus of lung)
part_of:UBERON:0004821(pulmonary alveolus epithelium)



Children


derives from:FF:0000012 (human alveolar epithelial cell sample),FF:0102060 (bronchioalveolar carcinoma cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000322 (pneumocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_59389166674fd1ec6f5fceafb9467669p14@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_59389166674fd1ec6f5fceafb9467669p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_59389166674fd1ec6f5fceafb9467669p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_59389166674fd1ec6f5fceafb9467669p9@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_59389166674fd1ec6f5fceafb9467669p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_59389166674fd1ec6f5fceafb9467669p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_59389166674fd1ec6f5fceafb9467669p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_59389166674fd1ec6f5fceafb9467669p1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_59389166674fd1ec6f5fceafb9467669p13@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_59389166674fd1ec6f5fceafb9467669p9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_59389166674fd1ec6f5fceafb9467669p1@ENST00000430271
2.39e-66FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_59389166674fd1ec6f5fceafb9467669p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_59389166674fd1ec6f5fceafb9467669p13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_59389166674fd1ec6f5fceafb9467669p14@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_59389166674fd1ec6f5fceafb9467669p13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_59389166674fd1ec6f5fceafb9467669p12@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_59389166674fd1ec6f5fceafb9467669p13@DNMBP
2.39e-66FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_59389166674fd1ec6f5fceafb9467669p1@SSX5
2.39e-66FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_59389166674fd1ec6f5fceafb9467669p1@SSX5
2.39e-66FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_59389166674fd1ec6f5fceafb9467669p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_59389166674fd1ec6f5fceafb9467669p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_59389166674fd1ec6f5fceafb9467669p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_59389166674fd1ec6f5fceafb9467669p16@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_59389166674fd1ec6f5fceafb9467669p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_59389166674fd1ec6f5fceafb9467669p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_59389166674fd1ec6f5fceafb9467669p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_59389166674fd1ec6f5fceafb9467669p16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_59389166674fd1ec6f5fceafb9467669p1@ENST00000418699, p1@ENST00000432330
1.53e-44FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_2ac3a7b13cf35f6209a0a1848f5c1b90p@chr2:191696381..191696384, -
1.53e-44FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_2ac3a7b13cf35f6209a0a1848f5c1b90p@chr2:191696381..191696384, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_653c956dfff3c4e5645d4f681538a817p7@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_653c956dfff3c4e5645d4f681538a817p30@NELF
4.27e-34FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_653c956dfff3c4e5645d4f681538a817p11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_653c956dfff3c4e5645d4f681538a817p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_653c956dfff3c4e5645d4f681538a817p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_653c956dfff3c4e5645d4f681538a817p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_653c956dfff3c4e5645d4f681538a817p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_653c956dfff3c4e5645d4f681538a817p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_653c956dfff3c4e5645d4f681538a817p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_653c956dfff3c4e5645d4f681538a817p3@FMR1NB
4.27e-34FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_653c956dfff3c4e5645d4f681538a817p11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_653c956dfff3c4e5645d4f681538a817p3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_653c956dfff3c4e5645d4f681538a817p30@PDP1
4.27e-34FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_653c956dfff3c4e5645d4f681538a817p30@PDP1
4.27e-34FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_653c956dfff3c4e5645d4f681538a817p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_653c956dfff3c4e5645d4f681538a817p7@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_653c956dfff3c4e5645d4f681538a817p@chr9:103785643..103785646, -
4.27e-34FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_653c956dfff3c4e5645d4f681538a817p@chr9:103785643..103785646, -
4.27e-34FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_653c956dfff3c4e5645d4f681538a817p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_653c956dfff3c4e5645d4f681538a817p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_653c956dfff3c4e5645d4f681538a817p30@NELF
4.27e-34FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_653c956dfff3c4e5645d4f681538a817p@chr11:104005546..104005596, -
5.96e-34FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_498b368fea151929e9c57f42121a7391p6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_498b368fea151929e9c57f42121a7391p@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_498b368fea151929e9c57f42121a7391p@chr6:45399533..45399540, +
5.96e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_498b368fea151929e9c57f42121a7391p@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_498b368fea151929e9c57f42121a7391p@chr3:139035972..139036016, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_498b368fea151929e9c57f42121a7391p@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_498b368fea151929e9c57f42121a7391p5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_498b368fea151929e9c57f42121a7391p@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_498b368fea151929e9c57f42121a7391p@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_498b368fea151929e9c57f42121a7391p5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_498b368fea151929e9c57f42121a7391p@chr6:46985426..46985427, -
5.96e-34FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_498b368fea151929e9c57f42121a7391p12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_498b368fea151929e9c57f42121a7391p@chr6:45399263..45399274, +
5.96e-34FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_498b368fea151929e9c57f42121a7391p@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_498b368fea151929e9c57f42121a7391p@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_498b368fea151929e9c57f42121a7391p36@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_498b368fea151929e9c57f42121a7391p@chr6:46985426..46985427, -
5.96e-34FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_498b368fea151929e9c57f42121a7391p12@AADAT
5.96e-34FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_498b368fea151929e9c57f42121a7391p@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_498b368fea151929e9c57f42121a7391p@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_498b368fea151929e9c57f42121a7391p@chr6:169691363..169691375, -
5.96e-34FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_498b368fea151929e9c57f42121a7391p@chr6:141743015..141743025, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_498b368fea151929e9c57f42121a7391p36@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_498b368fea151929e9c57f42121a7391p@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_498b368fea151929e9c57f42121a7391p@chr1:119837700..119837705, +
5.96e-34FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_498b368fea151929e9c57f42121a7391p@chr15:55806847..55806854, -
5.96e-34FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_498b368fea151929e9c57f42121a7391p@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_498b368fea151929e9c57f42121a7391p@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_498b368fea151929e9c57f42121a7391p34@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_498b368fea151929e9c57f42121a7391p@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_498b368fea151929e9c57f42121a7391p@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_498b368fea151929e9c57f42121a7391p@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_498b368fea151929e9c57f42121a7391p34@NELF
5.96e-34FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_498b368fea151929e9c57f42121a7391p@chr1:93054640..93054674, -
5.96e-34FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_498b368fea151929e9c57f42121a7391p@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_498b368fea151929e9c57f42121a7391p@chr1:119837700..119837705, +
5.96e-34FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_498b368fea151929e9c57f42121a7391p6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_498b368fea151929e9c57f42121a7391p@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_498b368fea151929e9c57f42121a7391p@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_498b368fea151929e9c57f42121a7391p@chr6:45405393..45405412, +
1.71e-30FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_4fc424dae05ab6940d5f78f415c5796dp1@BC018659
1.71e-30FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_4fc424dae05ab6940d5f78f415c5796dp1@BC018659
1.59e-27FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_e4c88162f4a531354c5ecac5ef5d2a19p@chr14:29047235..29047244, +
1.59e-27FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_e4c88162f4a531354c5ecac5ef5d2a19p@chr14:29047235..29047244, +
3.56e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_872c612dfb405292136b19d97a453edcp@chr17:171082..171101, +
3.56e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_872c612dfb405292136b19d97a453edcp@chr17:171082..171101, +
7.93e-25FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_9536dad12d75f290d9b26c852d96609fp@chr7:27163592..27163605, -
7.93e-25FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_9536dad12d75f290d9b26c852d96609fp@chr7:27163592..27163605, -

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