CL:0000244: Difference between revisions
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|located_in= | |located_in= | ||
|name=transitional epithelial cell | |name=transitional epithelial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:32, 12 September 2014
| Name: | transitional epithelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell characteristically found lining hollow organs that are subject to great mechanical change due to contraction and distention; originally thought to represent a transition between stratified squamous and columnar epithelium." [GOC:tfm, ISBN:0721662544] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0002371(somatic cell) |
|---|
Children
| is a: | CL:0000731 (urothelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Mouse (Mus musculus)
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000244 (transitional epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.31e-99 | FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_609df7436b8a002567bcd82c1d0dd8ac | p9@BTBD16 |
| 8.31e-99 | FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_609df7436b8a002567bcd82c1d0dd8ac | p9@BTBD16 |
| 7.02e-88 | FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_858ba46728ddc331dec5260b5c26cff9 | p6@BTBD16 |
| 7.02e-88 | FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_858ba46728ddc331dec5260b5c26cff9 | p6@BTBD16 |
| 6.32e-80 | FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_4f426c9fe6e31229bf3e8aa6552f00f6 | p16@PTHLH |
| 6.32e-80 | FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_4f426c9fe6e31229bf3e8aa6552f00f6 | p16@PTHLH |
| 1.16e-79 | FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_17ea11fbfe64f63f2096ec2e5255238d | p@chr5:61213179..61213189, - |
| 1.16e-79 | FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_17ea11fbfe64f63f2096ec2e5255238d | p@chr5:61213179..61213189, - |
| 3.32e-74 | FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_54baad3d7b9d3f71acc53700048ca117 | p@chrX:102977640..102977644, - |
| 3.32e-74 | FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_54baad3d7b9d3f71acc53700048ca117 | p@chrX:102977640..102977644, - |
| 4.26e-74 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_d73fef576312ea22cb8abfe474f583f2 | p4@IFNK |
| 4.26e-74 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_d73fef576312ea22cb8abfe474f583f2 | p4@IFNK |
| 2.23e-72 | FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_de84605926027f731185b3a983c646f9 | p@chr1:40492754..40492762, + |
| 2.23e-72 | FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_de84605926027f731185b3a983c646f9 | p@chr1:40492754..40492762, + |
| 2.68e-72 | FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_43b63565bcb5a04831db711bffc17e50 | p@chr10:3954276..3954287, + |
| 2.68e-72 | FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_43b63565bcb5a04831db711bffc17e50 | p@chr10:3954276..3954287, + |
| 3.47e-67 | FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_67860149cc6e8e2f28c2b68e98e6c3f9 | p17@PTHLH |
| 3.47e-67 | FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_67860149cc6e8e2f28c2b68e98e6c3f9 | p17@PTHLH |
| 2.4e-66 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_ddc3a03b5cfeddffc85bf577251c52ee | p38@PTK2 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_ddc3a03b5cfeddffc85bf577251c52ee | p38@PTK2 |
| 2.61e-64 | FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_28bd00aa61416a8e496ec86de6c7e9cf | p@chr5:61213127..61213133, - |
| 2.61e-64 | FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_28bd00aa61416a8e496ec86de6c7e9cf | p@chr5:61213127..61213133, - |
| 7.67e-64 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_d265504237023e7769656a8642e1eeb3 | p@chr21:44168074..44168079, + |
| 7.67e-64 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_d265504237023e7769656a8642e1eeb3 | p@chr21:44168074..44168079, + |
| 1.18e-63 | FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_a71386fc7633cfff69897874ce36c428 | p@chr4:125341514..125341526, - |
| 1.18e-63 | FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_a71386fc7633cfff69897874ce36c428 | p@chr4:125341514..125341526, - |
| 1.67e-61 | FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_6bc5a18aeb69fb0a88a22c13ba8072e4 | p@chr10:127763979..127763984, + |
| 1.67e-61 | FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_6bc5a18aeb69fb0a88a22c13ba8072e4 | p@chr10:127763979..127763984, + |
| 1.06e-56 | FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_160208c6c2c632d3ede4fad417cf82b5 | p@chr11:127965855..127965866, + |
| 1.06e-56 | FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_160208c6c2c632d3ede4fad417cf82b5 | p@chr11:127965855..127965866, + |
| 1.64e-56 | FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_f9658674d86f04adb687cba2211d03a3 | p@chr19:15065111..15065171, - |
| 1.64e-56 | FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_f9658674d86f04adb687cba2211d03a3 | p@chr19:15065111..15065171, - |
| 4.09e-54 | FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_57010f4383a912d08a65c47e27144c11 | p3@BTBD16 |
| 4.09e-54 | FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_57010f4383a912d08a65c47e27144c11 | p3@BTBD16 |
| 1.81e-53 | FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_50497459846ae12225c7c6c6413cd443 | p13@MTHFD1L |
| 1.81e-53 | FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_50497459846ae12225c7c6c6413cd443 | p13@MTHFD1L |
| 7.95e-53 | FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_8105c6b559777fef179b6b755815b084 | p@chr7:2019948..2019961, - |
| 7.95e-53 | FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_8105c6b559777fef179b6b755815b084 | p@chr7:2019948..2019961, - |
| 1.07e-50 | FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_94a4911fb33e1d880b83713ee034c449 | p30@AGAP3 |
| 1.07e-50 | FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_94a4911fb33e1d880b83713ee034c449 | p30@AGAP3 |
| 1.21e-50 | FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_2e158ba17e66105ce80d03266c6874e6 | p@chr2:31560793..31560814, - |
| 1.21e-50 | FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_2e158ba17e66105ce80d03266c6874e6 | p@chr2:31560793..31560814, - |
| 2.23e-50 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_c711b08b9d0ba76dc8f7d872e3821874 | p@chr13:20934450..20934456, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_c711b08b9d0ba76dc8f7d872e3821874 | p@chr13:20934450..20934456, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_ba406d4affbaa43bc7b8b63d0c5dc52a | p@chr14:85935018..85935023, - |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_ba406d4affbaa43bc7b8b63d0c5dc52a | p@chr14:85935018..85935023, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_0524b5f60ef3b2dbbd26048b2f386db0 | p@chr9:113802868..113802878, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_0524b5f60ef3b2dbbd26048b2f386db0 | p@chr9:21564382..21564387, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_0524b5f60ef3b2dbbd26048b2f386db0 | p@chr9:113802868..113802878, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_0524b5f60ef3b2dbbd26048b2f386db0 | p@chr9:21564382..21564387, - |
| 8.47e-50 | FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_50f652efae485eaaa16c5d288ec53463 | p@chr19:43965689..43965700, - |
| 8.47e-50 | FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_50f652efae485eaaa16c5d288ec53463 | p@chr19:43965689..43965700, - |
| 1.41e-49 | FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_13ebc93352b065d47e0afea4a55641c6 | p32@FRMD6 |
| 1.41e-49 | FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_13ebc93352b065d47e0afea4a55641c6 | p32@FRMD6 |
| 5.41e-48 | FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_c45ef719d13a042a598bc6894540d238 | p@chr21:45020721..45020728, - |
| 5.41e-48 | FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_c45ef719d13a042a598bc6894540d238 | p@chr21:45020721..45020728, - |
| 8.73e-48 | FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_395a6bbf04d5bcd264166da97f74012f | p@chr8:143814087..143814102, - |
| 8.73e-48 | FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_395a6bbf04d5bcd264166da97f74012f | p@chr8:143814087..143814102, - |
| 2.66e-45 | FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_b06aa7aec7c03905f95f5ee007eed696 | p@chr1:183192299..183192310, + |
| 2.66e-45 | FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_b06aa7aec7c03905f95f5ee007eed696 | p@chr1:183192299..183192310, + |
| 3.1e-45 | FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_de53bc5598ae5ff62594deba1f9c1515 | p@chr2:20402306..20402318, - |
| 3.1e-45 | FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_de53bc5598ae5ff62594deba1f9c1515 | p@chr4:125341479..125341498, - |
| 3.1e-45 | FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_de53bc5598ae5ff62594deba1f9c1515 | p@chr2:20402306..20402318, - |
| 3.1e-45 | FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_de53bc5598ae5ff62594deba1f9c1515 | p@chr4:125341479..125341498, - |
| 4.87e-45 | FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_6f5f34b0b246b701308110dc85a4b2ec | p1@IFNK |
| 4.87e-45 | FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_6f5f34b0b246b701308110dc85a4b2ec | p1@IFNK |
| 5.66e-45 | FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_047aed3c2ed4e9f4cdef0274562b7e0e | p6@GJB6 |
| 5.66e-45 | FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_047aed3c2ed4e9f4cdef0274562b7e0e | p@chr1:99387558..99387571, - |
| 5.66e-45 | FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_047aed3c2ed4e9f4cdef0274562b7e0e | p@chr1:99387558..99387571, - |
| 5.66e-45 | FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_047aed3c2ed4e9f4cdef0274562b7e0e | p6@GJB6 |
| 1.56e-43 | FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_467cdade7fc2592dec97deaf8512253b | p2@BTBD16 |
| 1.56e-43 | FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_467cdade7fc2592dec97deaf8512253b | p2@BTBD16 |
| 1.27e-41 | FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_f3f211c9f3b819eff2728becf7b50898 | p@chr1:183212642..183212654, + |
| 1.27e-41 | FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_f3f211c9f3b819eff2728becf7b50898 | p@chr1:183212642..183212654, + |
| 2.53e-41 | FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_fad72b185a6222c7b81e115275e5c7fb | p@chr6:44096519..44096530, - |
| 2.53e-41 | FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_fad72b185a6222c7b81e115275e5c7fb | p19@NDST1 |
| 2.53e-41 | FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_fad72b185a6222c7b81e115275e5c7fb | p@chr6:44096519..44096530, - |
| 2.53e-41 | FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_fad72b185a6222c7b81e115275e5c7fb | p19@NDST1 |
| 2.79e-41 | FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_8d05fe5f12d50a26ce41fc1d9e840377 | p@chr13:20762566..20762577, - |
| 2.79e-41 | FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_8d05fe5f12d50a26ce41fc1d9e840377 | p@chr13:20762566..20762577, - |
| 7.76e-41 | FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_f9f4bab6535566951ca876e44950a789 | p@chr5:146263947..146263959, - |
| 7.76e-41 | FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_f9f4bab6535566951ca876e44950a789 | p@chr5:146263947..146263959, - |
| 1.75e-40 | FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_81344674af14a6462fb888afbc6b60fd | p@chr1:183204832..183204840, + |
| 1.75e-40 | FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_81344674af14a6462fb888afbc6b60fd | p@chr1:183204832..183204840, + |
| 1.81e-40 | FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_5d28b5a9e71b2b34c75eceab98b07686 | p25@KCNJ15 |
| 1.81e-40 | FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_5d28b5a9e71b2b34c75eceab98b07686 | p25@KCNJ15 |
| 4.05e-40 | FFCP PHASE1:Hg19::chr2:31560770..31560779,-#_e33bb7e92fdf29007a999a07a55c7d88 | p@chr2:31560770..31560779, - |
| 4.05e-40 | FFCP PHASE2:Hg19::chr2:31560770..31560779,-#_e33bb7e92fdf29007a999a07a55c7d88 | p@chr2:31560770..31560779, - |
| 1.54e-39 | FFCP PHASE2:Hg19::chr10:3954241..3954256,+#_5d5e186b3f437255718df429932cf2b5 | p@chr10:3954241..3954256, + |
| 1.54e-39 | FFCP PHASE1:Hg19::chr10:3954241..3954256,+#_5d5e186b3f437255718df429932cf2b5 | p@chr10:3954241..3954256, + |
| 1.44e-38 | FFCP PHASE1:Hg19::chr1:183204785..183204796,+#_76e1a39402cca785bd71b2dade019feb | p@chr1:183204785..183204796, + |
| 1.44e-38 | FFCP PHASE2:Hg19::chr1:183204785..183204796,+#_76e1a39402cca785bd71b2dade019feb | p@chr1:183204785..183204796, + |
| 5.23e-38 | FFCP PHASE2:Hg19::chr3:52083895..52083904,-#_6665582fd091c71ff0cbbe0d3489870c | p21@DUSP7 |
| 5.23e-38 | FFCP PHASE1:Hg19::chr3:52083895..52083904,-#_6665582fd091c71ff0cbbe0d3489870c | p21@DUSP7 |
| 6.73e-38 | FFCP PHASE2:Hg19::chr1:183205712..183205723,+#_0b8cc8c5bad0fa29072f649d58dd5719 | p@chr1:183205712..183205723, + |
| 6.73e-38 | FFCP PHASE1:Hg19::chr1:183205712..183205723,+#_0b8cc8c5bad0fa29072f649d58dd5719 | p@chr1:183205712..183205723, + |
| 7.63e-38 | FFCP PHASE1:Hg19::chr2:43266741..43266748,-#_a7247a611ce8523ef6d5b89364398db5 | p2@ENST00000449766 |
| 7.63e-38 | FFCP PHASE2:Hg19::chr2:43266741..43266748,-#_a7247a611ce8523ef6d5b89364398db5 | p2@ENST00000449766 |
| 2.18e-37 | FFCP PHASE1:Hg19::chr13:20763282..20763295,-#_432ccf604c46ce0efe980092c2175238 | p6@GJB2 |
| 2.18e-37 | FFCP PHASE2:Hg19::chr13:20763282..20763295,-#_432ccf604c46ce0efe980092c2175238 | p6@GJB2 |
