Personal tools

CL:0000236: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0000236 |name=B cell |namespace=cell |def="A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000236
|alt_id=
|name=B cell
|namespace=cell
|def="A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
|xref=BTO:0000776;;FMA:62869
|is_a=CL:0000945
|synonym="B lymphocyte" EXACT [];;"B-cell" EXACT [];;"B-lymphocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000826
|develops_from=CL:0000826
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000236
|is_a=CL:0000945
|is_obsolete=
|located_in=
|located_in=
|name=B cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="B lymphocyte" EXACT [];;"B-cell" EXACT [];;"B-lymphocyte" EXACT []
|union_of=
|xref=BTO:0000776;;FMA:62869
}}
}}

Latest revision as of 16:32, 12 September 2014

Name:B cell
Namespace:FANTOM
Definition:"A lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Xrefs:
links:

BTO:0000776

FMA:62869
Synonyms: "B lymphocyte" EXACT []
"B-cell" EXACT []
"B-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000945(lymphocyte of B lineage)
develops_from:CL:0000826(pro-B cell)



Children


is a:CL:0000785 (mature B cell),CL:0000817 (precursor B cell),CL:0000818 (transitional stage B cell)
derives from:FF:0000025 (CD19-positive B cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000236 (B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.42e-143FFCP PHASE1:Hg19::chr11:58869930..58869933,-#_81dd3c8a9f75df66219016782b0699eep@chr11:58869930..58869933, -
3.42e-143FFCP PHASE2:Hg19::chr11:58869930..58869933,-#_81dd3c8a9f75df66219016782b0699eep@chr11:58869930..58869933, -
5.72e-141FFCP PHASE1:Hg19::chr4:102879640..102879645,+#_0415c70166d0cc9ef543014908454b89p@chr4:102879640..102879645, +
5.72e-141FFCP PHASE2:Hg19::chr4:102879640..102879645,+#_0415c70166d0cc9ef543014908454b89p@chr4:102879640..102879645, +
5.72e-141FFCP PHASE2:Hg19::chr11:82774371..82774374,-#_0415c70166d0cc9ef543014908454b89p@chr11:82774371..82774374, -
5.72e-141FFCP PHASE1:Hg19::chr11:82774371..82774374,-#_0415c70166d0cc9ef543014908454b89p@chr11:82774371..82774374, -
6.53e-141FFCP PHASE1:Hg19::chr6:32575596..32575598,-#_d90cf824cdbe5393b46db52ae5bbfb14p@chr6:32575596..32575598, -
6.53e-141FFCP PHASE1:Hg19::chr2:231313038..231313049,+#_d90cf824cdbe5393b46db52ae5bbfb14p@chr2:231313038..231313049, +
6.53e-141FFCP PHASE2:Hg19::chr6:32575596..32575598,-#_d90cf824cdbe5393b46db52ae5bbfb14p@chr6:32575596..32575598, -
6.53e-141FFCP PHASE2:Hg19::chr2:231313038..231313049,+#_d90cf824cdbe5393b46db52ae5bbfb14p@chr2:231313038..231313049, +
1.35e-139FFCP PHASE2:Hg19::chr10:5882480..5882508,+#_729db76eee1fa9005d9f52313bd46cebp@chr10:5882480..5882508, +
1.35e-139FFCP PHASE1:Hg19::chr10:5882480..5882508,+#_729db76eee1fa9005d9f52313bd46cebp@chr10:5882480..5882508, +
2.14e-139FFCP PHASE2:Hg19::chr19:42385114..42385126,+#_bdbe002b341048bf96b94c4c89c12167p@chr19:42385114..42385126, +
2.14e-139FFCP PHASE1:Hg19::chr19:42385114..42385126,+#_bdbe002b341048bf96b94c4c89c12167p@chr19:42385114..42385126, +
8.11e-139FFCP PHASE1:Hg19::chr9:37034277..37034297,+#_7398d650f529453bd286875eec180644p@chr9:37034277..37034297, +
8.11e-139FFCP PHASE2:Hg19::chr9:37034277..37034297,+#_7398d650f529453bd286875eec180644p@chr9:37034277..37034297, +
1.18e-134FFCP PHASE1:Hg19::chr6:89324309..89324332,-#_eb9bb07bcc2a16c9a59a1b7b36960641p@chr6:89324309..89324332, -
1.18e-134FFCP PHASE2:Hg19::chr6:89324309..89324332,-#_eb9bb07bcc2a16c9a59a1b7b36960641p@chr6:89324309..89324332, -
6.0e-134FFCP PHASE1:Hg19::chr3:112178705..112178716,-#_538ade58b9413e125c8f2c3c4b590e5bp@chr3:112178705..112178716, -
6.0e-134FFCP PHASE2:Hg19::chr3:112178705..112178716,-#_538ade58b9413e125c8f2c3c4b590e5bp@chr3:112178705..112178716, -
2.29e-130FFCP PHASE1:Hg19::chr9:82847043..82847053,+#_b8321a61341e54f627075d77666e21e6p@chr9:82847043..82847053, +
2.29e-130FFCP PHASE2:Hg19::chr9:82847043..82847053,+#_b8321a61341e54f627075d77666e21e6p@chr9:82847043..82847053, +
5.01e-127FFCP PHASE1:Hg19::chr9:37034351..37034358,+#_d05cc611106a9cfcc4d588f3696f0531p@chr9:37034351..37034358, +
5.01e-127FFCP PHASE2:Hg19::chr9:37034351..37034358,+#_d05cc611106a9cfcc4d588f3696f0531p@chr9:37034351..37034358, +
9.66e-127FFCP PHASE2:Hg19::chr6:32784847..32784854,-#_5721bfff5d7c03214d0a1c58d47ced2cp2@HLA-DOB
9.66e-127FFCP PHASE1:Hg19::chr6:32784847..32784854,-#_5721bfff5d7c03214d0a1c58d47ced2cp2@HLA-DOB
3.36e-125FFCP PHASE1:Hg19::chr6:89324022..89324033,-#_43c28cfcc18d915840311d8b52db7d81p@chr6:89324022..89324033, -
3.36e-125FFCP PHASE2:Hg19::chr6:89324022..89324033,-#_43c28cfcc18d915840311d8b52db7d81p@chr6:89324022..89324033, -
2.02e-124FFCP PHASE2:Hg19::chr9:37027587..37027596,-#_fcc6671a0de5b2d73296256189301a55p@chr9:37027587..37027596, -
2.02e-124FFCP PHASE1:Hg19::chr9:37027587..37027596,-#_fcc6671a0de5b2d73296256189301a55p@chr9:37027587..37027596, -
3.94e-121FFCP PHASE1:Hg19::chr16:15733143..15733164,-#_6adae72e4803108404f74df3fa9240fdp13@KIAA0430
3.94e-121FFCP PHASE2:Hg19::chr16:15733143..15733164,-#_6adae72e4803108404f74df3fa9240fdp13@KIAA0430
9.8e-121FFCP PHASE2:Hg19::chr14:106367355..106367369,-#_a6ca27c49ab1490be1d448db3cad9832p@chr14:106367355..106367369, -
9.8e-121FFCP PHASE1:Hg19::chr14:106367355..106367369,-#_a6ca27c49ab1490be1d448db3cad9832p@chr14:106367355..106367369, -
2.95e-119FFCP PHASE2:Hg19::chr2:89184868..89184885,+#_c8933f0283cc6df22199b061c1c5b6a1p1@IGKV4-1
2.95e-119FFCP PHASE1:Hg19::chr2:89184868..89184885,+#_c8933f0283cc6df22199b061c1c5b6a1p1@IGKV4-1
5.46e-119FFCP PHASE2:Hg19::chr1:203294429..203294440,+#_4117cc656f252839bcc7727a9be09b88p@chr1:203294429..203294440, +
5.46e-119FFCP PHASE1:Hg19::chr1:203294429..203294440,+#_4117cc656f252839bcc7727a9be09b88p@chr1:203294429..203294440, +
9.11e-119FFCP PHASE1:Hg19::chr7:120789593..120789628,+#_40d7782e98770d0d9c9e3b84188898a9p10@C7orf58
9.11e-119FFCP PHASE2:Hg19::chr7:120789593..120789628,+#_40d7782e98770d0d9c9e3b84188898a9p10@C7orf58
2.42e-118FFCP PHASE2:Hg19::chr9:95491611..95491638,-#_5f88e6deb640bed8f5ad7f8090c16923p@chr9:95491611..95491638, -
2.42e-118FFCP PHASE1:Hg19::chr9:95491611..95491638,-#_5f88e6deb640bed8f5ad7f8090c16923p@chr9:95491611..95491638, -
1.04e-116FFCP PHASE2:Hg19::chr14:96181767..96181778,+#_891493aa6f6da719c9aa26e9be534689p2@ENST00000556386
1.04e-116FFCP PHASE1:Hg19::chr14:96181767..96181778,+#_891493aa6f6da719c9aa26e9be534689p2@ENST00000556386
1.03e-115FFCP PHASE1:Hg19::chr14:96178718..96178752,-#_029df5f2a5c689834987d4088e9865ffp3@TCL1A
1.03e-115FFCP PHASE2:Hg19::chr14:96178718..96178752,-#_029df5f2a5c689834987d4088e9865ffp3@TCL1A
2.11e-113FFCP PHASE1:Hg19::chr4:102711977..102711978,+#_99149b1bd51810f5edf5b2385a23d000p9@BANK1
2.11e-113FFCP PHASE2:Hg19::chr4:102711977..102711978,+#_99149b1bd51810f5edf5b2385a23d000p9@BANK1
4.0e-113FFCP PHASE1:Hg19::chr3:107938341..107938354,-#_df845218ffbe2811a42e0fc566bfdbe0p9@IFT57
4.0e-113FFCP PHASE2:Hg19::chr3:107938341..107938354,-#_df845218ffbe2811a42e0fc566bfdbe0p9@IFT57
7.43e-113FFCP PHASE2:Hg19::chr14:96178079..96178099,+#_55cf8bb1fdf31cf705c45d9b31260a65p1@ENST00000547644, p1@ENST00000553445
7.43e-113FFCP PHASE1:Hg19::chr14:96178079..96178099,+#_55cf8bb1fdf31cf705c45d9b31260a65p1@ENST00000547644, p1@ENST00000553445
7.69e-113FFCP PHASE1:Hg19::chr2:232536651..232536664,+#_9be1f68cee48ef98e16dc475155a6606p@chr2:232536651..232536664, +
7.69e-113FFCP PHASE2:Hg19::chr2:232536651..232536664,+#_9be1f68cee48ef98e16dc475155a6606p@chr2:232536651..232536664, +
1.43e-112FFCP PHASE1:Hg19::chr12:111078151..111078169,+#_1c47b9e6b9656dc7876d456f26882ad8p8@TCTN1
1.43e-112FFCP PHASE2:Hg19::chr12:111078151..111078169,+#_1c47b9e6b9656dc7876d456f26882ad8p8@TCTN1
7.03e-112FFCP PHASE2:Hg19::chr14:53190525..53190534,+#_2a82619867f5c8abb3ba4441fbfbc229p4@PSMC6
7.03e-112FFCP PHASE1:Hg19::chr14:53190525..53190534,+#_2a82619867f5c8abb3ba4441fbfbc229p4@PSMC6
7.03e-112FFCP PHASE1:Hg19::chr9:37326030..37326040,+#_2a82619867f5c8abb3ba4441fbfbc229p10@ZCCHC7
7.03e-112FFCP PHASE2:Hg19::chr9:37326030..37326040,+#_2a82619867f5c8abb3ba4441fbfbc229p10@ZCCHC7
2.24e-111FFCP PHASE1:Hg19::chr1:38940657..38940700,+#_b6b27b428eff6ee0361471889eeeb085p2@ENST00000452971
2.24e-111FFCP PHASE2:Hg19::chr1:38940657..38940700,+#_b6b27b428eff6ee0361471889eeeb085p2@ENST00000452971
3.69e-111FFCP PHASE2:Hg19::chr17:9955844..9955857,-#_d7e5ff418e79beb9fe4cf47703c7f167p@chr17:9955844..9955857, -
3.69e-111FFCP PHASE1:Hg19::chr17:9955844..9955857,-#_d7e5ff418e79beb9fe4cf47703c7f167p@chr17:9955844..9955857, -
7.87e-108FFCP PHASE1:Hg19::chr22:33617765..33617772,-#_25661658d5721e3cb6fe7280e2ac036cp2@ENST00000421232
7.87e-108FFCP PHASE2:Hg19::chr22:33617765..33617772,-#_25661658d5721e3cb6fe7280e2ac036cp2@ENST00000421232
1.23e-107FFCP PHASE2:Hg19::chr22:23260324..23260332,+#_5cb47d27e95d0da3592f8176512c3aecp@chr22:23260324..23260332, +
1.23e-107FFCP PHASE1:Hg19::chr22:23260324..23260332,+#_5cb47d27e95d0da3592f8176512c3aecp@chr22:23260324..23260332, +
1.53e-107FFCP PHASE2:Hg19::chr1:220943806..220943817,+#_c761b31584d70d13bdbaf7a01de7f4c1p@chr1:220943806..220943817, +
1.53e-107FFCP PHASE1:Hg19::chr1:220943806..220943817,+#_c761b31584d70d13bdbaf7a01de7f4c1p@chr1:220943806..220943817, +
1.92e-107FFCP PHASE1:Hg19::chr10:49880475..49880487,-#_b91dffd0053f4e1a0e618239fda2ff19p1@ENST00000440750
1.92e-107FFCP PHASE2:Hg19::chr10:49880475..49880487,-#_b91dffd0053f4e1a0e618239fda2ff19p1@ENST00000440750
2.67e-107FFCP PHASE1:Hg19::chr14:106352840..106352888,-#_b778291eefbe2642efab9d08f7fa7057p@chr14:106352840..106352888, -
2.67e-107FFCP PHASE2:Hg19::chr14:106352840..106352888,-#_b778291eefbe2642efab9d08f7fa7057p@chr14:106352840..106352888, -
1.83e-106FFCP PHASE1:Hg19::chr7:22701524..22701535,-#_16b4236ae65615787ceca41335724cbcp2@ENST00000442252
1.83e-106FFCP PHASE2:Hg19::chr7:22701524..22701535,-#_16b4236ae65615787ceca41335724cbcp2@ENST00000442252
2.23e-106FFCP PHASE2:Hg19::chr1:157779174..157779185,-#_d8ed0d07e200908dac30f8f7a8afd7b0p@chr1:157779174..157779185, -
2.23e-106FFCP PHASE1:Hg19::chr1:157779174..157779185,-#_d8ed0d07e200908dac30f8f7a8afd7b0p@chr1:157779174..157779185, -
3.68e-106FFCP PHASE1:Hg19::chr12:32040185..32040200,-#_e7f1cb02ff67113fc0042ad02ab39db8p2@ENST00000535163
3.68e-106FFCP PHASE2:Hg19::chr12:32040185..32040200,-#_e7f1cb02ff67113fc0042ad02ab39db8p2@ENST00000535163
4.62e-106FFCP PHASE2:Hg19::chr19:7766976..7766982,-#_496ce1eea987cec68b44bfebe86cfa5cp9@FCER2
4.62e-106FFCP PHASE1:Hg19::chr19:7766976..7766982,-#_496ce1eea987cec68b44bfebe86cfa5cp9@FCER2
8.16e-106FFCP PHASE2:Hg19::chr3:45637869..45637880,-#_12f99c06cd48ab3faba83afa15bf72a6p@chr3:45637869..45637880, -
8.16e-106FFCP PHASE1:Hg19::chr3:45637869..45637880,-#_12f99c06cd48ab3faba83afa15bf72a6p@chr3:45637869..45637880, -
4.61e-103FFCP PHASE1:Hg19::chr5:111857189..111857217,+#_77d3bc8c6926461eabc0d327448a54dep1@ENST00000541361
4.61e-103FFCP PHASE2:Hg19::chr5:111857189..111857217,+#_77d3bc8c6926461eabc0d327448a54dep1@ENST00000541361
6.12e-103FFCP PHASE2:Hg19::chr2:89145640..89145676,+#_aca62f993d9d2a3b790e1072132ce2eep@chr2:89145640..89145676, +
6.12e-103FFCP PHASE1:Hg19::chr9:35618447..35618456,-#_aca62f993d9d2a3b790e1072132ce2eep7@CD72
6.12e-103FFCP PHASE2:Hg19::chr9:35618447..35618456,-#_aca62f993d9d2a3b790e1072132ce2eep7@CD72
6.12e-103FFCP PHASE1:Hg19::chr2:89145640..89145676,+#_aca62f993d9d2a3b790e1072132ce2eep@chr2:89145640..89145676, +
7.75e-103FFCP PHASE2:Hg19::chr12:111078120..111078129,+#_61fb4f9a23b59b08480351fd84bbe701p9@TCTN1
7.75e-103FFCP PHASE1:Hg19::chr12:111078120..111078129,+#_61fb4f9a23b59b08480351fd84bbe701p9@TCTN1
7.43e-102FFCP PHASE1:Hg19::chr10:97501785..97501801,+#_cd17ad4ccabdea31d18f9cb3f9511ca1p9@ENTPD1
7.43e-102FFCP PHASE2:Hg19::chr10:97501785..97501801,+#_cd17ad4ccabdea31d18f9cb3f9511ca1p9@ENTPD1
1.94e-101FFCP PHASE1:Hg19::chr3:107938378..107938392,-#_4772d22d123e677de6174ee2a255291dp7@IFT57
1.94e-101FFCP PHASE2:Hg19::chr3:107938378..107938392,-#_4772d22d123e677de6174ee2a255291dp7@IFT57
3.28e-101FFCP PHASE2:Hg19::chr7:148133853..148133864,-#_801575e89e304e90bb1af52c1049a594p@chr7:148133853..148133864, -
3.28e-101FFCP PHASE1:Hg19::chr7:148133853..148133864,-#_801575e89e304e90bb1af52c1049a594p@chr7:148133853..148133864, -
6.05e-101FFCP PHASE2:Hg19::chr18:77220664..77220696,+#_3e0230be74c0a04997db16452342c4d1p@chr18:77220664..77220696, +
6.05e-101FFCP PHASE1:Hg19::chr18:77220664..77220696,+#_3e0230be74c0a04997db16452342c4d1p@chr18:77220664..77220696, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000236&oldid=3275245"