CL:0000213: Difference between revisions
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|located_in= | |located_in= | ||
|name=lining cell | |name=lining cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:31, 12 September 2014
| Name: | lining cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [JB:jb] |
| Synonyms: | "boundary cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000215(barrier cell) |
|---|
Children
| is a: | CL:0000077 (mesothelial cell),CL:0000115 (endothelial cell),CL:0000214 (synovial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
... further results Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10845-111E8 (mesothelioma cell line:NCI-H28)
- 10846-111E9 (mesothelioma cell line:NCI-H226)
- 10847-111F1 (mesothelioma cell line:NCI-H2052)
- 10848-111F2 (mesothelioma cell line:NCI-H2452)
- 10849-111F3 (mesothelioma cell line:Mero-14)
- 10850-111F4 (mesothelioma cell line:Mero-25)
- 10851-111F5 (mesothelioma cell line:Mero-41)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000213 (lining cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.38e-90 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5 | p@chr6:3753188..3753192, - |
| 9.38e-90 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_072930dc9969cd3fef8b3e480eb8d3b5 | p@chr6:3753188..3753192, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:129407463..129407468, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:88237840..88237851, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:85585991..85586025, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:34796428..34796430, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:141645056..141645068, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:116223548..116223551, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:86691530..86691535, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:62009160..62009164, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:51831254..51831256, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr3:90270007..90270012, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr16:85547242..85547252, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:48822294..48822295, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:28107053..28107062, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:87046930..87046933, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:3311867..3311873, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:54785454..54785456, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:94580525..94580530, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:87745380..87745385, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:115280630..115280662, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:86691575..86691580, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:82209805..82209851, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:88890706..88890745, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:62009160..62009164, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:100000226..100000230, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:8586393..8586401, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35093764..35093773, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:86713876..86713879, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:42915220..42915225, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:100000226..100000230, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:8400090..8400093, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chrX:166418658..166418683, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:35900327..35900366, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:169549462..169549477, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:47491114..47491123, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:88237840..88237851, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:25530071..25530072, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:129407463..129407468, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:12388232..12388237, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:88669906..88669914, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:59435855..59435878, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:52781901..52781904, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p6@Adamts1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:114123814..114123821, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:48398664..48398684, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr15:88669906..88669914, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:64344878..64344887, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:137570295..137570315, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:93819538..93819549, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35106363..35106372, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:109223756..109223764, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:119254092..119254100, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:48822294..48822295, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:85586219..85586227, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:28107053..28107062, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:34798555..34798562, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr13:113053257..113053258, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr10:85585949..85585969, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr16:30944451..30944485, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:67870501..67870507, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:86691575..86691580, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr12:81955014..81955018, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:88890706..88890745, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:116223548..116223551, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p4@Pag1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p8@Map3k8 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:48398664..48398684, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr9:42915101..42915106, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p6@Adamts1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr6:15678147..15678149, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr8:3311867..3311873, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr1:66883923..66883955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr16:91441786..91441787, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr11:117737077..117737096, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p8@Map3k8 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:75375903..75375931, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p4@Gm4262 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr18:47491114..47491123, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_5b0c75943c8b43fa20ca5af38a0f0d0e | p@chr5:32912678..32912687, + |
