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{{CL
{{CL
|id=CL:0000138
|alt_id=
|name=chondrocyte
|namespace=cell;;efo
|def="Polymorphic cell that form cartilage." [MESH:A.11.329.171]
|xref=BTO:0000249;;FMA:66782
|is_a=CL:0000153;;CL:0000667
|synonym="cartilage cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Polymorphic cell that form cartilage." [MESH:A.11.329.171]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000058
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000138
|is_a=CL:0000153 ;;CL:0000667
|is_obsolete=
|located_in=
|located_in=
|name=chondrocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cartilage cell" EXACT []
|union_of=
|xref=BTO:0000249;;FMA:66782
}}
}}

Latest revision as of 16:30, 12 September 2014

Name:chondrocyte
Namespace:FANTOM
Definition:"Polymorphic cell that form cartilage." [MESH:A.11.329.171]
Xrefs:
links:

BTO:0000249

FMA:66782
Synonyms: "cartilage cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000153(GAG secreting cell),CL:0000667(collagen secreting cell)
develops_from:CL:0000058(chondroblast)



Children


derives from:FF:0000037 (human chondrocyte sample),FF:0101574 (chondrosarcoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000138 (chondrocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.17e-105FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_d3c7454e1ae041283ac7c3c5efe75943p@chr7:150824026..150824027, -
5.17e-105FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_d3c7454e1ae041283ac7c3c5efe75943p@chr7:150824026..150824027, -
4.67e-75FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_20571246e28383207b9f7a8465cae8b0p@chr8:57359975..57359992, -
4.67e-75FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_20571246e28383207b9f7a8465cae8b0p@chr8:57359975..57359992, -
5.66e-75FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_fb23dc840c29f4c4e2def4d3f540c266p@chr8:57353982..57353991, -
5.66e-75FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_fb23dc840c29f4c4e2def4d3f540c266p@chr8:57353982..57353991, -
4.26e-74FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_e5401f07cedf71aba93c2e2613a4e567p@chr16:66906996..66906997, -
4.26e-74FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_e5401f07cedf71aba93c2e2613a4e567p@chr16:66906996..66906997, -
5.47e-74FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_5ae2297b4d230438fca10e2e7d7e83cfp@chr8:57354278..57354286, +
5.47e-74FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_5ae2297b4d230438fca10e2e7d7e83cfp@chr8:57354278..57354286, +
2.83e-66FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_31363fec89dc856eb459c0329d11f0fbp@chr12:57628728..57628739, -
2.83e-66FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_31363fec89dc856eb459c0329d11f0fbp@chr8:37535618..37535621, +
2.83e-66FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_31363fec89dc856eb459c0329d11f0fbp@chr8:37535618..37535621, +
2.83e-66FFCP PHASE2:Hg19::chr21:40033882..40033887,-#_31363fec89dc856eb459c0329d11f0fbp21@ERG
2.83e-66FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_31363fec89dc856eb459c0329d11f0fbp@chr12:57628728..57628739, -
2.83e-66FFCP PHASE1:Hg19::chr21:40033882..40033887,-#_31363fec89dc856eb459c0329d11f0fbp21@ERG
5.13e-66FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_e57afda5837fc721011929b58fd5b76bp6@ACAN
5.13e-66FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_e57afda5837fc721011929b58fd5b76bp6@ACAN
1.63e-59FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr12:57629315..57629334, -
1.63e-59FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr15:89417758..89417770, +
1.63e-59FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr15:89417758..89417770, +
1.63e-59FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr12:57629315..57629334, -
1.82e-59FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_8d7596e081d16dd8623b9cc0a67fd182p@chr8:57354143..57354152, +
1.82e-59FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_8d7596e081d16dd8623b9cc0a67fd182p@chr8:57354143..57354152, +
4.12e-59FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_d2c655b8fb891487c871e9ac9702e494p8@ACAN
4.12e-59FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_d2c655b8fb891487c871e9ac9702e494p8@ACAN
7.47e-59FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_3cd6bb6f3687754a393baad9c05eb343p@chr1:186277359..186277362, +
7.47e-59FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_3cd6bb6f3687754a393baad9c05eb343p@chr1:186277359..186277362, +
7.47e-59FFCP PHASE2:Hg19::chr12:54651599..54651610,-#_3cd6bb6f3687754a393baad9c05eb343p40@CBX5
7.47e-59FFCP PHASE1:Hg19::chr12:54651599..54651610,-#_3cd6bb6f3687754a393baad9c05eb343p40@CBX5
1.01e-58FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_b90ac9c93249e59d43b9bd86686eefd3p@chr1:186273262..186273282, +
1.01e-58FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_b90ac9c93249e59d43b9bd86686eefd3p@chr1:186273262..186273282, +
1.36e-58FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_8b72d094d6bf5cf579d0bf260f13e273p9@ERG
1.36e-58FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_8b72d094d6bf5cf579d0bf260f13e273p9@ERG
1.82e-58FFCP PHASE2:Hg19::chr8:57354262..57354270,+#_837ff2c1e01195f7a27cf2a8dea91578p@chr8:57354262..57354270, +
1.82e-58FFCP PHASE1:Hg19::chr8:57354262..57354270,+#_837ff2c1e01195f7a27cf2a8dea91578p@chr8:57354262..57354270, +
3.54e-53FFCP PHASE2:Hg19::chr8:57353888..57353898,-#_6e3838afe797f7cc14b7a0c7c6ec3006p@chr8:57353888..57353898, -
3.54e-53FFCP PHASE1:Hg19::chr8:57353888..57353898,-#_6e3838afe797f7cc14b7a0c7c6ec3006p@chr8:57353888..57353898, -
3.84e-50FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_3aecd676cc0abc91d5d9b82460b56101p@chr1:186277186..186277192, +
3.84e-50FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_3aecd676cc0abc91d5d9b82460b56101p@chr1:186277186..186277192, +
1.08e-49FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_bfd3454c58989b8245f8c57250abe68ep@chr15:89381951..89381962, +
1.08e-49FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_bfd3454c58989b8245f8c57250abe68ep@chr15:89381951..89381962, +
4.78e-49FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_85b1166027ccaa6ecd182b122ba39054p@chr12:57629234..57629249, -
4.78e-49FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_85b1166027ccaa6ecd182b122ba39054p@chr12:57629234..57629249, -
5.83e-49FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_eb79300e864dbc19a178a2c61c3e22adp19@CHI3L1
5.83e-49FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_eb79300e864dbc19a178a2c61c3e22adp19@CHI3L1
3.67e-47FFCP PHASE1:Hg19::chr6:112375516..112375536,+#_378d02b4b0f32bc3eb0ea9d222bdde90p2@WISP3
3.67e-47FFCP PHASE2:Hg19::chr6:112375516..112375536,+#_378d02b4b0f32bc3eb0ea9d222bdde90p2@WISP3
1.41e-45FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_e0d5a3f2302cd98a59e59c8fe9dc5b33p20@CHI3L1
1.41e-45FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_e0d5a3f2302cd98a59e59c8fe9dc5b33p20@CHI3L1
9.76e-45FFCP PHASE2:Hg19::chr1:186275455..186275462,+#_5d99b55c82d93d55040bcb29be810c5bp@chr1:186275455..186275462, +
9.76e-45FFCP PHASE1:Hg19::chr1:186275455..186275462,+#_5d99b55c82d93d55040bcb29be810c5bp@chr1:186275455..186275462, +
9.76e-45FFCP PHASE2:Hg19::chr7:45953092..45953099,+#_5d99b55c82d93d55040bcb29be810c5bp@chr7:45953092..45953099, +
9.76e-45FFCP PHASE1:Hg19::chr7:45953092..45953099,+#_5d99b55c82d93d55040bcb29be810c5bp@chr7:45953092..45953099, +
1.52e-44FFCP PHASE2:Hg19::chr17:40998185..40998200,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998185..40998200, +
1.52e-44FFCP PHASE1:Hg19::chr17:40998185..40998200,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998185..40998200, +
1.52e-44FFCP PHASE2:Hg19::chr17:40998201..40998206,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998201..40998206, +
1.52e-44FFCP PHASE1:Hg19::chr17:40998201..40998206,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998201..40998206, +
1.52e-44FFCP PHASE2:Hg19::chr1:186266030..186266037,+#_8915387aff8756b4b0bbd8626956daeep6@PRG4
1.52e-44FFCP PHASE1:Hg19::chr1:186266030..186266037,+#_8915387aff8756b4b0bbd8626956daeep6@PRG4
1.52e-44FFCP PHASE2:Hg19::chr16:69963162..69963192,+#_8915387aff8756b4b0bbd8626956daeep@chr16:69963162..69963192, +
1.52e-44FFCP PHASE1:Hg19::chr16:69963162..69963192,+#_8915387aff8756b4b0bbd8626956daeep@chr16:69963162..69963192, +
1.52e-44FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_8915387aff8756b4b0bbd8626956daeep@chr9:97563078..97563086, +
1.52e-44FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_8915387aff8756b4b0bbd8626956daeep@chr9:97563078..97563086, +
7.53e-44FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_b7a3459c22d1a8eb664a043aadd486c0p14@CHI3L1
7.53e-44FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_b7a3459c22d1a8eb664a043aadd486c0p14@CHI3L1
3.16e-43FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_5a9687fcb1d62c36e245e0b8d57400cbp10@ACAN
3.16e-43FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_5a9687fcb1d62c36e245e0b8d57400cbp10@ACAN
3.65e-43FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_beac24c719a3f25e8abc0964c284aa48p@chr7:45956964..45956971, +
3.65e-43FFCP PHASE2:Hg19::chrX:7077601..7077607,+#_beac24c719a3f25e8abc0964c284aa48p17@STS
3.65e-43FFCP PHASE1:Hg19::chrX:7077601..7077607,+#_beac24c719a3f25e8abc0964c284aa48p17@STS
3.65e-43FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_beac24c719a3f25e8abc0964c284aa48p@chr7:45956964..45956971, +
6.48e-43FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_f0d153d048c48459d8a2b3604ff70b72p@chr8:57354360..57354367, +
6.48e-43FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_f0d153d048c48459d8a2b3604ff70b72p@chr8:57354360..57354367, +
8.63e-43FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_11ec81d02df34f4aba08bb9904eef7dbp@chr8:57353804..57353821, -
8.63e-43FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_11ec81d02df34f4aba08bb9904eef7dbp@chr8:57353804..57353821, -
1.03e-41FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_4fa2ef4a59e4d5d8a0a5a025521b7a5ep@chr1:203152908..203152924, -
1.03e-41FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_4fa2ef4a59e4d5d8a0a5a025521b7a5ep@chr1:203152908..203152924, -
7.63e-41FFCP PHASE2:Hg19::chr9:97807545..97807558,+#_9ff16c7ab72d2b5f050a849397c55b13p@chr9:97807545..97807558, +
7.63e-41FFCP PHASE1:Hg19::chr9:97807545..97807558,+#_9ff16c7ab72d2b5f050a849397c55b13p@chr9:97807545..97807558, +
1.04e-40FFCP PHASE2:Hg19::chr8:57353745..57353754,-#_2a90dccc29b619a8ffee9bf0846de88dp@chr8:57353745..57353754, -
1.04e-40FFCP PHASE1:Hg19::chr8:57353745..57353754,-#_2a90dccc29b619a8ffee9bf0846de88dp@chr8:57353745..57353754, -
1.57e-40FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_bb9142a009dea3bfc16497032b7ebbeap21@CHI3L1
1.57e-40FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_bb9142a009dea3bfc16497032b7ebbeap21@CHI3L1
1.82e-39FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_a0516bfa713d5946da68920f1645c176p16@CHI3L1
1.82e-39FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_a0516bfa713d5946da68920f1645c176p16@CHI3L1
7.29e-39FFCP PHASE2:Hg19::chr7:45956988..45956995,+#_6c08d91e3f7246d0e4031fed0889063ep@chr7:45956988..45956995, +
7.29e-39FFCP PHASE1:Hg19::chr7:45956988..45956995,+#_6c08d91e3f7246d0e4031fed0889063ep@chr7:45956988..45956995, +
9.74e-39FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_20ec2ec30e83887604742863732e2fa5p@chr7:45953320..45953329, +
9.74e-39FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_20ec2ec30e83887604742863732e2fa5p@chr7:45953320..45953329, +
1.3e-38FFCP PHASE2:Hg19::chr3:176912032..176912061,-#_34988340a883bb4d9144985447fa9788p1@BC070375
1.3e-38FFCP PHASE1:Hg19::chr3:176912032..176912061,-#_34988340a883bb4d9144985447fa9788p1@BC070375
2.18e-38FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_20513a8bbe703a63be4b854e7b3e1a4dp6@ERG
2.18e-38FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_20513a8bbe703a63be4b854e7b3e1a4dp6@ERG
5.47e-38FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_fea133fbb35a051a1b580c1baeed5ce9p@chr8:57354275..57354292, -
5.47e-38FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_fea133fbb35a051a1b580c1baeed5ce9p@chr8:57354275..57354292, -
6.3e-38FFCP PHASE2:Hg19::chr1:186276499..186276506,+#_9290df1fb57a36382ca26ca1aa62e8f3p@chr1:186276499..186276506, +
6.3e-38FFCP PHASE1:Hg19::chr1:186276499..186276506,+#_9290df1fb57a36382ca26ca1aa62e8f3p@chr1:186276499..186276506, +
8.66e-38FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_6c835623c9ee2d45e99ea3545a1da9a9p13@CHI3L1
8.66e-38FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_6c835623c9ee2d45e99ea3545a1da9a9p13@CHI3L1

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