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{{UBERON
{{UBERON
|id=UBERON:0010260
|alt_id=
|name=umbilical blood vessel
|namespace=
|def=
|xref=
|is_a=UBERON:0001981
|synonym="umbilical cord blood vessel" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010260
|is_a=UBERON:0001981
|is_obsolete=
|located_in=
|located_in=
|name=umbilical blood vessel
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="umbilical cord blood vessel" EXACT []
|union_of=
|xref=
}}
}}

Revision as of 11:49, 12 September 2014

Name:umbilical blood vessel
Synonyms: "umbilical cord blood vessel" EXACT []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001981(blood vessel)



Children

is a:UBERON:0001310 (umbilical artery),UBERON:0002066 (umbilical vein)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
  • 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
  • 11290-117A3 (Smooth Muscle Cells - Umbilical Artery, donor1)
  • 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
  • 11367-117I8 (Smooth Muscle Cells - Umbilical Artery, donor2)
  • 11400-118D5 (Endothelial Cells - Umbilical vein, donor3)
  • 11439-118H8 (Smooth Muscle Cells - Umbilical Artery, donor3)
  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010260 (umbilical blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.58e-53FFCP PHASE2:Hg19::chr13:28903811..28903815,-#_b4e18023577d7d358c9a60915dac57c8p3@FLT1
4.58e-53FFCP PHASE1:Hg19::chr13:28903811..28903815,-#_b4e18023577d7d358c9a60915dac57c8p3@FLT1
9.75e-45FFCP PHASE1:Hg19::chr1:78512168..78512171,-#_5f67d05bf15360b6a4c1b086becc14d0p@chr1:78512168..78512171, -
9.75e-45FFCP PHASE2:Hg19::chr1:78512168..78512171,-#_5f67d05bf15360b6a4c1b086becc14d0p@chr1:78512168..78512171, -
4.97e-40FFCP PHASE1:Hg19::chr12:65928345..65928348,-#_e09104a8c9a03077bd60af0f9cb434f5p@chr12:65928345..65928348, -
4.97e-40FFCP PHASE2:Hg19::chr12:65928345..65928348,-#_e09104a8c9a03077bd60af0f9cb434f5p@chr12:65928345..65928348, -
8.87e-34FFCP PHASE2:Hg19::chr1:78510648..78510661,+#_01c0d485e09e5a211b9698fef3c09c2ep7@GIPC2
8.87e-34FFCP PHASE2:Hg19::chr10:94590950..94590955,+#_01c0d485e09e5a211b9698fef3c09c2ep13@EXOC6
8.87e-34FFCP PHASE1:Hg19::chr10:94590950..94590955,+#_01c0d485e09e5a211b9698fef3c09c2ep13@EXOC6
8.87e-34FFCP PHASE1:Hg19::chr1:78510648..78510661,+#_01c0d485e09e5a211b9698fef3c09c2ep7@GIPC2
1.24e-33FFCP PHASE2:Hg19::chr13:28896641..28896653,-#_ab99f3e9468971711ff9302eda9cf33cp5@FLT1
1.24e-33FFCP PHASE1:Hg19::chr13:28896641..28896653,-#_ab99f3e9468971711ff9302eda9cf33cp5@FLT1
1.73e-33FFCP PHASE2:Hg19::chr12:105962745..105962748,+#_a5a145081a04d49948b9a4301e068e78p@chr12:105962745..105962748, +
1.73e-33FFCP PHASE1:Hg19::chr12:105962745..105962748,+#_a5a145081a04d49948b9a4301e068e78p@chr12:105962745..105962748, +
1.93e-33FFCP PHASE2:Hg19::chr3:42515138..42515150,-#_d346db9d9cfabcea4b903d0047f3cbebp@chr3:42515138..42515150, -
1.93e-33FFCP PHASE1:Hg19::chr3:42515138..42515150,-#_d346db9d9cfabcea4b903d0047f3cbebp@chr3:42515138..42515150, -
3.59e-30FFCP PHASE2:Hg19::chr11:116728907..116728948,+#_d04d43a708c80da40962631185560709p2@CU690121
3.59e-30FFCP PHASE1:Hg19::chr11:116728907..116728948,+#_d04d43a708c80da40962631185560709p2@CU690121
4.14e-29FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_0c76bb97fd4b8273a6c7e16ccc18706dp@chr13:75941109..75941132, -
4.14e-29FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_0c76bb97fd4b8273a6c7e16ccc18706dp@chr13:75941109..75941132, -
6.2e-29FFCP PHASE2:Hg19::chr1:78511901..78511912,+#_b8c6f78f4d297739b8772ab77ebb8965p6@GIPC2
6.2e-29FFCP PHASE1:Hg19::chr1:78511901..78511912,+#_b8c6f78f4d297739b8772ab77ebb8965p6@GIPC2
9.98e-29FFCP PHASE2:Hg19::chr11:59875891..59875903,-#_6602217ba7d40b906fc28d020d17aa74p@chr11:59875891..59875903, -
9.98e-29FFCP PHASE1:Hg19::chr11:59875891..59875903,-#_6602217ba7d40b906fc28d020d17aa74p@chr11:59875891..59875903, -
1.09e-26FFCP PHASE2:Hg19::chr12:54362447..54362462,-#_78eff34bec4c93efe696c4b26692f3f8p1@HOTAIR
1.09e-26FFCP PHASE1:Hg19::chr12:54362447..54362462,-#_78eff34bec4c93efe696c4b26692f3f8p1@HOTAIR
1.17e-25FFCP PHASE1:Hg19::chr18:53146977..53146999,-#_2cd03508807fc1086b3f621590dc48d3p@chr18:53146977..53146999, -
1.17e-25FFCP PHASE2:Hg19::chr18:53146977..53146999,-#_2cd03508807fc1086b3f621590dc48d3p@chr18:53146977..53146999, -
1.92e-25FFCP PHASE2:Hg19::chr10:94590997..94591006,+#_7065655a83126e7ca8acaa73679f1062p11@EXOC6
1.92e-25FFCP PHASE1:Hg19::chr10:94590997..94591006,+#_7065655a83126e7ca8acaa73679f1062p11@EXOC6
2.27e-25FFCP PHASE2:Hg19::chr12:105863737..105863745,+#_4a3e470cb4d17a133c7d588a9f78a13ep@chr12:105863737..105863745, +
2.27e-25FFCP PHASE1:Hg19::chr12:105863737..105863745,+#_4a3e470cb4d17a133c7d588a9f78a13ep@chr12:105863737..105863745, +
2.62e-23FFCP PHASE2:Hg19::chr17:54543635..54543636,+#_60bf0ef4f609c73e09d864695157b9b3p@chr17:54543635..54543636, +
2.62e-23FFCP PHASE1:Hg19::chr17:54543635..54543636,+#_60bf0ef4f609c73e09d864695157b9b3p@chr17:54543635..54543636, +
2.62e-23FFCP PHASE2:Hg19::chr17:54543642..54543647,+#_60bf0ef4f609c73e09d864695157b9b3p@chr17:54543642..54543647, +
2.62e-23FFCP PHASE1:Hg19::chr17:54543642..54543647,+#_60bf0ef4f609c73e09d864695157b9b3p@chr17:54543642..54543647, +
4.59e-23FFCP PHASE2:Hg19::chr12:105889929..105889933,+#_27c2e4dcbf61c0ae7bf8cdd974fa3578p@chr12:105889929..105889933, +
4.59e-23FFCP PHASE2:Hg19::chr16:82788994..82789018,+#_27c2e4dcbf61c0ae7bf8cdd974fa3578p@chr16:82788994..82789018, +
4.59e-23FFCP PHASE1:Hg19::chr12:105889929..105889933,+#_27c2e4dcbf61c0ae7bf8cdd974fa3578p@chr12:105889929..105889933, +
4.59e-23FFCP PHASE1:Hg19::chr16:82788994..82789018,+#_27c2e4dcbf61c0ae7bf8cdd974fa3578p@chr16:82788994..82789018, +
8.69e-23FFCP PHASE1:Hg19::chr5:63803524..63803561,+#_e5f5468b5d64158c1a59360e3b917a41p15@RGS7BP
8.69e-23FFCP PHASE2:Hg19::chr5:63803524..63803561,+#_e5f5468b5d64158c1a59360e3b917a41p15@RGS7BP
1.46e-22FFCP PHASE2:Hg19::chr21:27284505..27284518,-#_66c7520513a11b06e8b0a2218164ed40p@chr21:27284505..27284518, -
1.46e-22FFCP PHASE1:Hg19::chr21:27284505..27284518,-#_66c7520513a11b06e8b0a2218164ed40p@chr21:27284505..27284518, -
3.48e-22FFCP PHASE2:Hg19::chr12:26783618..26783634,-#_7e7a033e3c32bb26ac6e40487d39dc77p8@ITPR2
3.48e-22FFCP PHASE1:Hg19::chr12:26783618..26783634,-#_7e7a033e3c32bb26ac6e40487d39dc77p8@ITPR2
3.57e-22FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_fb037a6f350caab615fb78eddd10ba97p@chr6:78171746..78171769, +
3.57e-22FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_fb037a6f350caab615fb78eddd10ba97p@chr6:78171746..78171769, +
1.09e-20FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_39b5da94ade8ec1ef8f867476676e53dp@chr1:172926077..172926120, -
1.09e-20FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_39b5da94ade8ec1ef8f867476676e53dp@chr1:172926077..172926120, -
1.24e-20FFCP PHASE2:Hg19::chr19:7861475..7861491,+#_99407aeb711142e83a64f56d6087a60ep@chr19:7861475..7861491, +
1.24e-20FFCP PHASE1:Hg19::chr19:7861475..7861491,+#_99407aeb711142e83a64f56d6087a60ep@chr19:7861475..7861491, +
4.99e-20FFCP PHASE2:Hg19::chr1:243433014..243433053,+#_7455fd838089f8afd54ffa4d4fa1a8ecp@chr1:243433014..243433053, +
4.99e-20FFCP PHASE1:Hg19::chr1:243433014..243433053,+#_7455fd838089f8afd54ffa4d4fa1a8ecp@chr1:243433014..243433053, +
6.02e-19FFCP PHASE2:Hg19::chr10:59999608..59999621,-#_bd3de7d893ff351bfc333e3a8102a511p@chr10:59999608..59999621, -
6.02e-19FFCP PHASE1:Hg19::chr10:59999608..59999621,-#_bd3de7d893ff351bfc333e3a8102a511p@chr10:59999608..59999621, -
1.17e-18FFCP PHASE2:Hg19::chr1:186946611..186946622,+#_efa397737a53675f3410db0f642d2e81p@chr1:186946611..186946622, +
1.17e-18FFCP PHASE1:Hg19::chr1:186946611..186946622,+#_efa397737a53675f3410db0f642d2e81p@chr1:186946611..186946622, +
1.48e-18FFCP PHASE2:Hg19::chr1:225516893..225516902,-#_b77a10d1bc3183cef9e499cbf92b6068p@chr1:225516893..225516902, -
1.48e-18FFCP PHASE1:Hg19::chr1:225516893..225516902,-#_b77a10d1bc3183cef9e499cbf92b6068p@chr1:225516893..225516902, -
1.68e-18FFCP PHASE2:Hg19::chr8:90556171..90556173,+#_97d9b3bec791829f41b183af3ab6d97fp@chr8:90556171..90556173, +
1.68e-18FFCP PHASE1:Hg19::chr8:90556171..90556173,+#_97d9b3bec791829f41b183af3ab6d97fp@chr8:90556171..90556173, +
2.22e-18FFCP PHASE2:Hg19::chr12:54359771..54359813,+#_b0b2381126a3db2fada9a897d28560bcp@chr12:54359771..54359813, +
2.22e-18FFCP PHASE1:Hg19::chr12:54359771..54359813,+#_b0b2381126a3db2fada9a897d28560bcp@chr12:54359771..54359813, +
7.26e-18FFCP PHASE2:Hg19::chr2:18479033..18479051,+#_33d2acb78d0d5ef019b1b4681b515b74p@chr2:18479033..18479051, +
7.26e-18FFCP PHASE1:Hg19::chr2:18479033..18479051,+#_33d2acb78d0d5ef019b1b4681b515b74p@chr2:18479033..18479051, +
1.01e-17FFCP PHASE2:Hg19::chr13:75941133..75941160,-#_1cdbefd399abe22037b0908fcde99466p@chr13:75941133..75941160, -
1.01e-17FFCP PHASE1:Hg19::chr13:75941133..75941160,-#_1cdbefd399abe22037b0908fcde99466p@chr13:75941133..75941160, -
2.32e-17FFCP PHASE2:Hg19::chr12:26783639..26783652,-#_65c2ee88e1b5150aee36b12314127760p9@ITPR2
2.32e-17FFCP PHASE1:Hg19::chr12:26783639..26783652,-#_65c2ee88e1b5150aee36b12314127760p9@ITPR2
2.68e-17FFCP PHASE1:Hg19::chr12:105863627..105863633,+#_8c823635ee3396cca9bb01237e03ccf3p@chr12:105863627..105863633, +
2.68e-17FFCP PHASE2:Hg19::chr12:105863627..105863633,+#_8c823635ee3396cca9bb01237e03ccf3p@chr12:105863627..105863633, +
4.39e-17FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_fdbf9b8b9510daae9b9786760ff30a96p@chr22:21138343..21138378, +
4.39e-17FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_fdbf9b8b9510daae9b9786760ff30a96p@chr22:21138343..21138378, +
9.72e-17FFCP PHASE2:Hg19::chr2:18479067..18479081,+#_6ce383536dda1aff924c45a7df679533p@chr2:18479067..18479081, +
9.72e-17FFCP PHASE1:Hg19::chr2:18479067..18479081,+#_6ce383536dda1aff924c45a7df679533p@chr2:18479067..18479081, +
4.66e-16FFCP PHASE2:Hg19::chr6:142622846..142622853,+#_0e708c26122cb2ba496d8841fa326926p12@GPR126
4.66e-16FFCP PHASE1:Hg19::chr6:142622846..142622853,+#_0e708c26122cb2ba496d8841fa326926p12@GPR126
6.33e-16FFCP PHASE2:Hg19::chr6:136359549..136359565,+#_3437c79aa1b202077235501554eacd7dp2@AB384352
6.33e-16FFCP PHASE1:Hg19::chr6:136359549..136359565,+#_3437c79aa1b202077235501554eacd7dp2@AB384352
6.66e-16FFCP PHASE2:Hg19::chr10:90713570..90713574,+#_5f79db70ad39a34c23fcc3d8d8786cb9p@chr10:90713570..90713574, +
6.66e-16FFCP PHASE1:Hg19::chr10:90713570..90713574,+#_5f79db70ad39a34c23fcc3d8d8786cb9p@chr10:90713570..90713574, +
9.76e-16FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_ec4eb27c7118b0da4b5cf382b4c002eep2@SOX17
9.76e-16FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_ec4eb27c7118b0da4b5cf382b4c002eep2@SOX17
1.13e-15FFCP PHASE2:Hg19::chr2:72789511..72789554,-#_188ef71d22917c26f8b730f2be9f742ap@chr2:72789511..72789554, -
1.13e-15FFCP PHASE1:Hg19::chr2:72789511..72789554,-#_188ef71d22917c26f8b730f2be9f742ap@chr2:72789511..72789554, -
1.22e-15FFCP PHASE2:Hg19::chr15:22545370..22545372,+#_ace2c49832dd4ddec07c51d5b47367c5p@chr15:22545370..22545372, +
1.22e-15FFCP PHASE1:Hg19::chr15:22545370..22545372,+#_ace2c49832dd4ddec07c51d5b47367c5p@chr15:22545370..22545372, +
1.31e-15FFCP PHASE2:Hg19::chr1:219514172..219514177,-#_33c3eaeb6ae7ab53cb284e7cd1b536bcp@chr1:219514172..219514177, -
1.31e-15FFCP PHASE1:Hg19::chr1:219514172..219514177,-#_33c3eaeb6ae7ab53cb284e7cd1b536bcp@chr1:219514172..219514177, -
1.34e-15FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_8929c1028d7d4ef8de4d1679f1e5d074p1@ENST00000439823
1.34e-15FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_8929c1028d7d4ef8de4d1679f1e5d074p1@ENST00000439823
1.52e-15FFCP PHASE1:Hg19::chr4:48082192..48082207,-#_60d3571f32cb3df364a23bb14619fbddp3@TXK
1.52e-15FFCP PHASE2:Hg19::chr11:59876093..59876098,-#_60d3571f32cb3df364a23bb14619fbddp@chr11:59876093..59876098, -
1.52e-15FFCP PHASE1:Hg19::chr11:59876093..59876098,-#_60d3571f32cb3df364a23bb14619fbddp@chr11:59876093..59876098, -
1.52e-15FFCP PHASE2:Hg19::chr4:48082192..48082207,-#_60d3571f32cb3df364a23bb14619fbddp3@TXK
3.32e-15FFCP PHASE2:Hg19::chr16:86965053..86965066,-#_df7f777e851e42f8e71cc0ccdcd6696ep@chr16:86965053..86965066, -
3.32e-15FFCP PHASE1:Hg19::chr16:86965053..86965066,-#_df7f777e851e42f8e71cc0ccdcd6696ep@chr16:86965053..86965066, -
2.71e-14FFCP PHASE2:Hg19::chr9:116716048..116716100,+#_c6e4c4b94e7d3e8ef16d1709df98d041p@chr9:116716048..116716100, +
2.71e-14FFCP PHASE1:Hg19::chr9:116716048..116716100,+#_c6e4c4b94e7d3e8ef16d1709df98d041p@chr9:116716048..116716100, +

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