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{{UBERON
{{UBERON
|id=UBERON:0009661
|alt_id=
|name=midbrain nucleus
|namespace=
|def="Nucleus located in the midbrain." [ZFIN:curator]
|xref=SCTID:279285003;;TAO:0002209;;ZFA:0001665
|is_a=UBERON:0002308;;UBERON:0002950
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Nucleus located in the midbrain." [ZFIN:curator]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0009661
|is_a=UBERON:0002308
|is_obsolete=
|located_in=
|located_in=
|name=midbrain nucleus
|namespace=
|obo_creation_date=
|part_of=UBERON:0001891
|part_of=UBERON:0001891
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=SCTID:279285003;;TAO:0002209;;ZFA:0001665
}}
}}

Revision as of 11:47, 12 September 2014

Name:midbrain nucleus
Definition:"Nucleus located in the midbrain." [ZFIN:curator]
Xrefs:
links:

SCTID:279285003
TAO:0002209

ZFA:0001665

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002308(nucleus of brain)
part_of:UBERON:0001891(midbrain)



Children

is a:UBERON:0002038 (substantia nigra)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009661 (midbrain nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_52ad9112fb8ee0a77a9927b55aa04396p5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_52ad9112fb8ee0a77a9927b55aa04396p59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_52ad9112fb8ee0a77a9927b55aa04396p@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_52ad9112fb8ee0a77a9927b55aa04396p@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_52ad9112fb8ee0a77a9927b55aa04396p59@ANK3
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr10:68718064..68718067, -
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_52ad9112fb8ee0a77a9927b55aa04396p5@C1orf130
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_1166e58076a5caada2325b4f7b11ac8bp@chr1:65776926..65776928, +
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_1166e58076a5caada2325b4f7b11ac8bp@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_1166e58076a5caada2325b4f7b11ac8bp@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_1166e58076a5caada2325b4f7b11ac8bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_1166e58076a5caada2325b4f7b11ac8bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_1166e58076a5caada2325b4f7b11ac8bp@chr1:65776926..65776928, +
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_f97d63962233db5346e9d86739692524p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_f97d63962233db5346e9d86739692524p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_f97d63962233db5346e9d86739692524p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_f97d63962233db5346e9d86739692524p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_f97d63962233db5346e9d86739692524p6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_f97d63962233db5346e9d86739692524p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_f97d63962233db5346e9d86739692524p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_f97d63962233db5346e9d86739692524p@chr16:57309513..57309516, -
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_7a52a960fe416eca5022ec4289192d84p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_7a52a960fe416eca5022ec4289192d84p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_7a52a960fe416eca5022ec4289192d84p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_7a52a960fe416eca5022ec4289192d84p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_7a52a960fe416eca5022ec4289192d84p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_7a52a960fe416eca5022ec4289192d84p@chr14:95727527..95727529, -
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr9:79516011..79516022, -
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_fc6371cdfba5f3159ad2145b79dc994ap8@OMG
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_fc6371cdfba5f3159ad2145b79dc994ap8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:34922094..34922105, +
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_45e8dabb959fa494c2c5df685a5beb60p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_45e8dabb959fa494c2c5df685a5beb60p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_45e8dabb959fa494c2c5df685a5beb60p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_45e8dabb959fa494c2c5df685a5beb60p@chr9:108178201..108178203, +
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_16951ec517e4efbc646ddfdd16829953p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_16951ec517e4efbc646ddfdd16829953p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_16951ec517e4efbc646ddfdd16829953p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_16951ec517e4efbc646ddfdd16829953p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_16951ec517e4efbc646ddfdd16829953p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_16951ec517e4efbc646ddfdd16829953p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_16951ec517e4efbc646ddfdd16829953p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_16951ec517e4efbc646ddfdd16829953p@chr6:89803656..89803659, +
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp21@PLEKHG1
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:3479944..3479947, -
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp21@PLEKHG1
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr1:161275096..161275109, -
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:137240632..137240635, +
8.97e-44FFCP PHASE2:Mm9::chr4:134073493..134073502,-#_ad3321536808d2a947ccf5a965e5c5cbp@chr4:134073493..134073502, -
8.97e-44FFCP PHASE1:Mm9::chr4:134073493..134073502,-#_ad3321536808d2a947ccf5a965e5c5cbp@chr4:134073493..134073502, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_6b5a80d92f7e3a89e83273b7af05011fp@chr4:139891920..139891924, -
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_6b5a80d92f7e3a89e83273b7af05011fp@chr4:139891920..139891924, -
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_6b5a80d92f7e3a89e83273b7af05011fp4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_6b5a80d92f7e3a89e83273b7af05011fp4@C5orf64
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_22efb9dd1563a776c51217ae7fd69e64p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_22efb9dd1563a776c51217ae7fd69e64p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_22efb9dd1563a776c51217ae7fd69e64p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_22efb9dd1563a776c51217ae7fd69e64p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_22efb9dd1563a776c51217ae7fd69e64p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_22efb9dd1563a776c51217ae7fd69e64p@chr5:152017019..152017026, +
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_5c9f595808f972f41b26a4104dd8481ep@chr9:139911084..139911102, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_5c9f595808f972f41b26a4104dd8481ep@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_5c9f595808f972f41b26a4104dd8481ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_5c9f595808f972f41b26a4104dd8481ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_5c9f595808f972f41b26a4104dd8481ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_5c9f595808f972f41b26a4104dd8481ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_5c9f595808f972f41b26a4104dd8481ep10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_5c9f595808f972f41b26a4104dd8481ep10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_5c9f595808f972f41b26a4104dd8481ep@chr9:139911084..139911102, -
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_5c9f595808f972f41b26a4104dd8481ep@chr17:71046459..71046462, -
2.21e-40FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_77b015ddfc114ec96c889166e40500e8p19@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_77b015ddfc114ec96c889166e40500e8p19@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_77b015ddfc114ec96c889166e40500e8p20@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_77b015ddfc114ec96c889166e40500e8p20@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_77b015ddfc114ec96c889166e40500e8p@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_77b015ddfc114ec96c889166e40500e8p@chrX:103046993..103046994, +

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