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{{UBERON
{{UBERON
|id=UBERON:0003918
|alt_id=
|name=kidney mesenchyme
|namespace=
|def="Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074]
|xref=
|is_a=UBERON:0003104
|synonym="mesenchyme of kidney" EXACT []
|comment=check this
|comment=check this
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003918
|is_a=UBERON:0003104
|is_obsolete=
|located_in=
|located_in=
|name=kidney mesenchyme
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme of kidney" EXACT []
|union_of=
|xref=
}}
}}

Revision as of 11:26, 12 September 2014

Name:kidney mesenchyme
Definition:"Kidney mesenchyme is the tissue made up of loosely connected mesenchymal cells in the kidney[GO]." [GO:0072074]
Synonyms: "mesenchyme of kidney" EXACT []
Comments:check this

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme)



Children

is a:UBERON:0003220 (metanephric mesenchyme)
develops from:UBERON:0001231 (nephron tubule),UBERON:0002113 (kidney)
part of:UBERON:0010536 (nephron progenitor)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003918 (kidney mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.73e-86FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_47375b4206321399a7eabf541c979389p4@PAX2
1.73e-86FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_47375b4206321399a7eabf541c979389p4@PAX2
2.28e-80FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_7487e1bf870588c2e823e28a1e56c31bp6@Hoxd8
2.28e-80FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_7487e1bf870588c2e823e28a1e56c31bp6@Hoxd8
3.64e-74FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_0926a0326aa298d170d847191019b2c4p8@Hoxd8
3.64e-74FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_0926a0326aa298d170d847191019b2c4p8@Hoxd8
5.03e-73FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_fb784900942bb2c1d0bb0e944049c6d2p3@PAX2
5.03e-73FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_fb784900942bb2c1d0bb0e944049c6d2p3@PAX2
3.13e-70FFCP PHASE1:Hg19::chr2:693380..693398,+#_91e3b9d6458d90d5fff92e4c05f0465fp@chr2:693380..693398, +
3.13e-70FFCP PHASE2:Hg19::chr2:693380..693398,+#_91e3b9d6458d90d5fff92e4c05f0465fp@chr2:693380..693398, +
5.44e-68FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_3b9d66196ab5b392345d753bd653bd5fp@chr19:44824107..44824111, -
5.44e-68FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_3b9d66196ab5b392345d753bd653bd5fp@chr19:44824107..44824111, -
6.57e-66FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_b67386bb613167ebff1d1885ce5a28bep7@HOXA10
6.57e-66FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_b67386bb613167ebff1d1885ce5a28bep7@HOXA10
2.27e-64FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_7f160fa8cc0c8b90a74259ad6267ca28p2@PAX2
2.27e-64FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_7f160fa8cc0c8b90a74259ad6267ca28p2@PAX2
2.61e-63FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_3e1b086fc6cf4294de690dcf886874ccp4@AIF1L
2.61e-63FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_3e1b086fc6cf4294de690dcf886874ccp4@AIF1L
9.07e-63FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_5bc7a59ba06871a82179a4ee52b66ebep1@ENST00000418041, p1@ENST00000443104
9.07e-63FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_5bc7a59ba06871a82179a4ee52b66ebep1@ENST00000418041, p1@ENST00000443104
1.43e-62FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_c3546a16162ae9e441c8025a4fdb2e1cp@chr10:3291561..3291580, +
1.43e-62FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_c3546a16162ae9e441c8025a4fdb2e1cp@chr10:3291561..3291580, +
7.58e-62FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_5f1aecd6730125bf17da97851188a623p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_5f1aecd6730125bf17da97851188a623p@chr19:44821149..44821161, +
7.58e-62FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_5f1aecd6730125bf17da97851188a623p@chr19:44899724..44899728, +
7.58e-62FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_5f1aecd6730125bf17da97851188a623p@chr19:44899724..44899728, +
4.78e-61FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_ef277bf17844bdfd1d5c356fdfd296c8p4@MEGF11
4.78e-61FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_ef277bf17844bdfd1d5c356fdfd296c8p4@MEGF11
1.07e-59FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_4030365b9fa7963a440c3ea6298c86b3p@chr8:107148422..107148433, +
1.07e-59FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_4030365b9fa7963a440c3ea6298c86b3p@chr8:107148422..107148433, +
6.23e-58FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_7964e1ab3c9f9e1de0cdf150c60ebb29p@chr10:50689167..50689171, +
6.23e-58FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_7964e1ab3c9f9e1de0cdf150c60ebb29p@chr10:50689167..50689171, +
8.0e-58FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_3ea92508d7894b64c29c68112b5cf7f6p@chr5:24755801..24755819, +
8.0e-58FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_3ea92508d7894b64c29c68112b5cf7f6p@chr5:24755801..24755819, +
1.03e-57FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_3d2f84c1c6c7b38f25e7d313365e8f33p@chr19:59532611..59532623, +
1.03e-57FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_3d2f84c1c6c7b38f25e7d313365e8f33p@chr19:59532611..59532623, +
2.2e-56FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_791d166e6b09f20455b40b23c1b0a03ep1@ENSMUST00000154177
2.2e-56FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_791d166e6b09f20455b40b23c1b0a03ep1@ENSMUST00000154177
9.89e-56FFCP PHASE1:Mm9::chr10:79277411..79277429,+#_ea500219202015148d1c653a7dea9593p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_ea500219202015148d1c653a7dea9593p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE2:Mm9::chr7:126785928..126785945,-#_ea500219202015148d1c653a7dea9593p3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr8:118959620..118959632,-#_ea500219202015148d1c653a7dea9593p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_ea500219202015148d1c653a7dea9593p4@Ros1
9.89e-56FFCP PHASE2:Mm9::chr2:74971765..74971779,-#_ea500219202015148d1c653a7dea9593p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_ea500219202015148d1c653a7dea9593p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
9.89e-56FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_ea500219202015148d1c653a7dea9593p7@Steap2
9.89e-56FFCP PHASE2:Mm9::chr5:5694436..5694447,-#_ea500219202015148d1c653a7dea9593p7@Steap2
9.89e-56FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_ea500219202015148d1c653a7dea9593p@chr10:79277411..79277429, +
9.89e-56FFCP PHASE1:Mm9::chr2:74971765..74971779,-#_ea500219202015148d1c653a7dea9593p@chr2:74971765..74971779, -
9.89e-56FFCP PHASE1:Mm9::chr7:31244771..31244782,+#_ea500219202015148d1c653a7dea9593p2@Nphs1
9.89e-56FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_ea500219202015148d1c653a7dea9593p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_ea500219202015148d1c653a7dea9593p3@uc009jll.1
9.89e-56FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_ea500219202015148d1c653a7dea9593p@chr19:17554168..17554181, +
9.89e-56FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_ea500219202015148d1c653a7dea9593p2@Nphs1
9.89e-56FFCP PHASE2:Mm9::chr7:47891824..47891827,-#_ea500219202015148d1c653a7dea9593p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_ea500219202015148d1c653a7dea9593p@chr10:50622895..50622905, +
9.89e-56FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_ea500219202015148d1c653a7dea9593p@chr7:47891824..47891827, -
9.89e-56FFCP PHASE2:Mm9::chr10:39251651..39251690,+#_ea500219202015148d1c653a7dea9593p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_ea500219202015148d1c653a7dea9593p@chr8:118959620..118959632, -
9.89e-56FFCP PHASE1:Mm9::chr10:39251651..39251690,+#_ea500219202015148d1c653a7dea9593p@chr10:39251651..39251690, +
9.89e-56FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_ea500219202015148d1c653a7dea9593p4@Ros1
9.89e-56FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_ea500219202015148d1c653a7dea9593p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
1.76e-55FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d74624847e4daca5a45fd662851c42e9p@chr18:3456189..3456200, +
1.76e-55FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d74624847e4daca5a45fd662851c42e9p@chr18:3456189..3456200, +
3.07e-55FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_6951e17b4e03af2f0c4a6d9f29d01debp@chr9:119741711..119741743, -
3.07e-55FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_6951e17b4e03af2f0c4a6d9f29d01debp@chr9:119741711..119741743, -
6.17e-52FFCP PHASE2:Mm9::chr11:75720190..75720216,-#_3137f4fbebd52e919395f6a6f2dc52d2p@chr11:75720190..75720216, -
6.17e-52FFCP PHASE1:Mm9::chr11:75720190..75720216,-#_3137f4fbebd52e919395f6a6f2dc52d2p@chr11:75720190..75720216, -
6.97e-52FFCP PHASE2:Mm9::chr13:108834249..108834299,+#_3456ce700dc9a3465c514bebc3de3fabp3@2810008M24Rik
6.97e-52FFCP PHASE1:Mm9::chr13:108834249..108834299,+#_3456ce700dc9a3465c514bebc3de3fabp3@2810008M24Rik
1.64e-51FFCP PHASE2:Mm9::chr2:74975548..74975563,-#_2581940a6ff29acaf81664307344572cp1@ENSMUST00000143898
1.64e-51FFCP PHASE1:Mm9::chr2:74975548..74975563,-#_2581940a6ff29acaf81664307344572cp1@ENSMUST00000143898
6.24e-51FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_5b013a90773f5b33efda4069375f8e7bp@chr7:7606139..7606151, -
6.24e-51FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_5b013a90773f5b33efda4069375f8e7bp@chr7:7606139..7606151, -
1.67e-50FFCP PHASE2:Mm9::chr3:96637141..96637180,+#_81260b65563f963554a860a12225c14cp4@Pdzk1
1.67e-50FFCP PHASE1:Mm9::chr3:96637141..96637180,+#_81260b65563f963554a860a12225c14cp4@Pdzk1
2.31e-50FFCP PHASE1:Mm9::chr13:98786159..98786170,-#_f35f477703584001ea5fede5fd3f861dp8@Rgnef
2.31e-50FFCP PHASE2:Mm9::chr13:98786159..98786170,-#_f35f477703584001ea5fede5fd3f861dp8@Rgnef
2.36e-50FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_43acee035b86426c7587d02b07fe3baep5@Cldn8
2.36e-50FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_43acee035b86426c7587d02b07fe3baep5@Cldn8
2.38e-50FFCP PHASE2:Mm9::chr7:31244710..31244719,+#_b96bea444653fd73db42e35c963dd1e0p4@Nphs1
2.38e-50FFCP PHASE1:Mm9::chr3:154257229..154257241,-#_b96bea444653fd73db42e35c963dd1e0p@chr3:154257229..154257241, -
2.38e-50FFCP PHASE2:Mm9::chr7:126785968..126785980,-#_b96bea444653fd73db42e35c963dd1e0p2@uc009jll.1
2.38e-50FFCP PHASE1:Mm9::chr10:12353875..12353921,-#_b96bea444653fd73db42e35c963dd1e0p@chr10:12353875..12353921, -
2.38e-50FFCP PHASE2:Mm9::chr3:154257229..154257241,-#_b96bea444653fd73db42e35c963dd1e0p@chr3:154257229..154257241, -
2.38e-50FFCP PHASE1:Mm9::chr7:31244710..31244719,+#_b96bea444653fd73db42e35c963dd1e0p4@Nphs1
2.38e-50FFCP PHASE1:Mm9::chr7:126785968..126785980,-#_b96bea444653fd73db42e35c963dd1e0p2@uc009jll.1
2.38e-50FFCP PHASE2:Mm9::chr10:12353875..12353921,-#_b96bea444653fd73db42e35c963dd1e0p@chr10:12353875..12353921, -
3.53e-50FFCP PHASE2:Mm9::chr10:3291584..3291599,+#_08224165d89e538838e5e61906a81f0fp@chr10:3291584..3291599, +
3.53e-50FFCP PHASE1:Mm9::chr10:3291584..3291599,+#_08224165d89e538838e5e61906a81f0fp@chr10:3291584..3291599, +
5.98e-50FFCP PHASE2:Mm9::chr17:34764056..34764069,-#_5826ac824902782fc31b4792342fa7b6p9@Ppt2
5.98e-50FFCP PHASE1:Mm9::chr17:34764056..34764069,-#_5826ac824902782fc31b4792342fa7b6p9@Ppt2
6.48e-50FFCP PHASE1:Mm9::chr4:107817557..107817589,-#_89e2ba2b6e2aadbefdde72db1882326bp5@Scp2
6.48e-50FFCP PHASE2:Mm9::chr4:107817557..107817589,-#_89e2ba2b6e2aadbefdde72db1882326bp5@Scp2
7.43e-50FFCP PHASE2:Mm9::chr2:74543235..74543246,+#_13cbc6384d3447ca1350e783e3116feep7@Hoxd8
7.43e-50FFCP PHASE1:Mm9::chr2:74543235..74543246,+#_13cbc6384d3447ca1350e783e3116feep7@Hoxd8
1.21e-49FFCP PHASE1:Mm9::chr6:83708841..83708859,+#_ef774d633c19e32f9831e9967b3f0d2fp@chr6:83708841..83708859, +
1.21e-49FFCP PHASE2:Mm9::chr7:86741766..86741778,-#_ef774d633c19e32f9831e9967b3f0d2fp@chr7:86741766..86741778, -
1.21e-49FFCP PHASE1:Mm9::chr2:124984656..124984673,+#_ef774d633c19e32f9831e9967b3f0d2fp@chr2:124984656..124984673, +
1.21e-49FFCP PHASE2:Mm9::chr10:127286959..127286970,+#_ef774d633c19e32f9831e9967b3f0d2fp3@Rdh19

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