Personal tools

UBERON:0000101: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000101
|alt_id=
|name=lobe of lung
|namespace=
|def="A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
|xref=FMA:7311;;galen:LobeOfLung;;ncithesaurus:Lung_Lobe;;OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA;;SCTID:245524004
|is_a=UBERON:0000064;;UBERON:0004119
|synonym="lung lobe" EXACT [];;"pulminory lobe" EXACT [];;"pulmonary lobe" EXACT [FMA:7311]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000101
|is_a=UBERON:0000064 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=lobe of lung
|namespace=
|obo_creation_date=
|part_of=UBERON:0002048
|part_of=UBERON:0002048
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="lung lobe" EXACT [];;"pulminory lobe" EXACT [];;"pulmonary lobe" EXACT [FMA:7311]
|union_of=
|xref=FMA:7311;;galen:LobeOfLung;;ncithesaurus:Lung_Lobe;;OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA;;SCTID:245524004
}}
}}

Revision as of 10:51, 12 September 2014

Name:lobe of lung
Definition:"A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
Xrefs:
links:

FMA:7311
galen:LobeOfLung
ncithesaurus:Lung_Lobe
OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA

SCTID:245524004
Synonyms: "lung lobe" EXACT []
"pulminory lobe" EXACT []
"pulmonary lobe" EXACT [FMA:7311]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0002048(lung)



Children

is a:UBERON:0006518 (right lung lobe),UBERON:0008949 (lower lobe of lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000101 (lobe of lung), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr10:81316872..81316887,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr10:81316872..81316887, +
5.42e-195FFCP PHASE2:Hg19::chr10:81316085..81316090,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr10:81316085..81316090, -
5.42e-195FFCP PHASE2:Hg19::chr8:22021803..22021813,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr8:22021803..22021813, -
5.42e-195FFCP PHASE1:Hg19::chr10:81374723..81374726,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr10:81374723..81374726, -
5.42e-195FFCP PHASE1:Hg19::chr2:85894675..85894679,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:85894675..85894679, +
5.42e-195FFCP PHASE1:Hg19::chr2:211117597..211117606,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:211117597..211117606, +
5.42e-195FFCP PHASE2:Hg19::chr2:85894638..85894644,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:85894638..85894644, +
5.42e-195FFCP PHASE1:Hg19::chr10:81316085..81316090,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr10:81316085..81316090, -
5.42e-195FFCP PHASE2:Hg19::chr2:96331830..96331836,+#_bb9436d85e355b87202ac7aaf421e4c0p1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE1:Hg19::chrX:93772866..93772868,-#_bb9436d85e355b87202ac7aaf421e4c0p@chrX:93772866..93772868, -
5.42e-195FFCP PHASE2:Hg19::chr6:32148852..32148862,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr6:32148852..32148862, -
5.42e-195FFCP PHASE2:Hg19::chr2:85893058..85893063,-#_bb9436d85e355b87202ac7aaf421e4c0p35@SFTPB
5.42e-195FFCP PHASE2:Hg19::chr2:85884987..85884992,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:85884987..85884992, -
5.42e-195FFCP PHASE1:Hg19::chr8:22021803..22021813,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr8:22021803..22021813, -
5.42e-195FFCP PHASE2:Hg19::chr2:85894675..85894679,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:85894675..85894679, +
5.42e-195FFCP PHASE2:Hg19::chr2:211117597..211117606,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:211117597..211117606, +
5.42e-195FFCP PHASE1:Hg19::chr2:85894638..85894644,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:85894638..85894644, +
5.42e-195FFCP PHASE1:Hg19::chr2:96331830..96331836,+#_bb9436d85e355b87202ac7aaf421e4c0p1@ENST00000425887, p1@uc002suw.1
5.42e-195FFCP PHASE2:Hg19::chr10:81316872..81316887,+#_bb9436d85e355b87202ac7aaf421e4c0p@chr10:81316872..81316887, +
5.42e-195FFCP PHASE1:Hg19::chr6:32148852..32148862,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr6:32148852..32148862, -
5.42e-195FFCP PHASE1:Hg19::chr2:85893058..85893063,-#_bb9436d85e355b87202ac7aaf421e4c0p35@SFTPB
5.42e-195FFCP PHASE1:Hg19::chr2:85884987..85884992,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr2:85884987..85884992, -
5.42e-195FFCP PHASE2:Hg19::chr10:81374723..81374726,-#_bb9436d85e355b87202ac7aaf421e4c0p@chr10:81374723..81374726, -
5.42e-195FFCP PHASE2:Hg19::chrX:93772866..93772868,-#_bb9436d85e355b87202ac7aaf421e4c0p@chrX:93772866..93772868, -
9.37e-99FFCP PHASE1:Hg19::chr6:32150708..32150711,-#_239a73af825730138dffc117c934ceb5p7@AGER
9.37e-99FFCP PHASE2:Hg19::chr10:81374313..81374327,+#_239a73af825730138dffc117c934ceb5p@chr10:81374313..81374327, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021454..22021463,+#_239a73af825730138dffc117c934ceb5p@chr8:22021454..22021463, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316910..81316917,-#_239a73af825730138dffc117c934ceb5p@chr10:81316910..81316917, -
9.37e-99FFCP PHASE1:Hg19::chr2:85886515..85886520,-#_239a73af825730138dffc117c934ceb5p@chr2:85886515..85886520, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374819..81374828,+#_239a73af825730138dffc117c934ceb5p@chr10:81374819..81374828, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316311..81316313,-#_239a73af825730138dffc117c934ceb5p@chr10:81316311..81316313, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021526..22021532,+#_239a73af825730138dffc117c934ceb5p@chr8:22021526..22021532, +
9.37e-99FFCP PHASE1:Hg19::chr10:81316041..81316047,-#_239a73af825730138dffc117c934ceb5p@chr10:81316041..81316047, -
9.37e-99FFCP PHASE1:Hg19::chr6:32148869..32148878,-#_239a73af825730138dffc117c934ceb5p@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374313..81374327,+#_239a73af825730138dffc117c934ceb5p@chr10:81374313..81374327, +
9.37e-99FFCP PHASE2:Hg19::chr10:81315944..81315951,-#_239a73af825730138dffc117c934ceb5p@chr10:81315944..81315951, -
9.37e-99FFCP PHASE1:Hg19::chr8:22020994..22020998,+#_239a73af825730138dffc117c934ceb5p@chr8:22020994..22020998, +
9.37e-99FFCP PHASE2:Hg19::chr10:81374331..81374339,+#_239a73af825730138dffc117c934ceb5p@chr10:81374331..81374339, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021482..22021493,+#_239a73af825730138dffc117c934ceb5p@chr8:22021482..22021493, +
9.37e-99FFCP PHASE2:Hg19::chr8:22020085..22020093,+#_239a73af825730138dffc117c934ceb5p12@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr10:81316910..81316917,-#_239a73af825730138dffc117c934ceb5p@chr10:81316910..81316917, -
9.37e-99FFCP PHASE1:Hg19::chr2:85892885..85892890,-#_239a73af825730138dffc117c934ceb5p23@SFTPB
9.37e-99FFCP PHASE2:Hg19::chr2:85892915..85892916,-#_239a73af825730138dffc117c934ceb5p40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr10:81316311..81316313,-#_239a73af825730138dffc117c934ceb5p@chr10:81316311..81316313, -
9.37e-99FFCP PHASE2:Hg19::chr8:22021903..22021951,-#_239a73af825730138dffc117c934ceb5p@chr8:22021903..22021951, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316132..81316137,-#_239a73af825730138dffc117c934ceb5p@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr10:81374587..81374595,+#_239a73af825730138dffc117c934ceb5p@chr10:81374587..81374595, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020196..22020202,+#_239a73af825730138dffc117c934ceb5p13@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr6:32149013..32149018,-#_239a73af825730138dffc117c934ceb5p@chr6:32149013..32149018, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316753..81316759,-#_239a73af825730138dffc117c934ceb5p@chr10:81316753..81316759, -
9.37e-99FFCP PHASE2:Hg19::chr3:127109563..127109564,-#_239a73af825730138dffc117c934ceb5p2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE2:Hg19::chr6:117746871..117746882,-#_239a73af825730138dffc117c934ceb5p10@ROS1
9.37e-99FFCP PHASE2:Hg19::chr2:85885348..85885355,-#_239a73af825730138dffc117c934ceb5p@chr2:85885348..85885355, -
9.37e-99FFCP PHASE1:Hg19::chr2:85894689..85894696,+#_239a73af825730138dffc117c934ceb5p@chr2:85894689..85894696, +
9.37e-99FFCP PHASE2:Hg19::chr10:81374752..81374761,+#_239a73af825730138dffc117c934ceb5p@chr10:81374752..81374761, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374331..81374339,+#_239a73af825730138dffc117c934ceb5p@chr10:81374331..81374339, +
9.37e-99FFCP PHASE1:Hg19::chr8:22021454..22021463,+#_239a73af825730138dffc117c934ceb5p@chr8:22021454..22021463, +
9.37e-99FFCP PHASE2:Hg19::chr2:85889234..85889238,-#_239a73af825730138dffc117c934ceb5p@chr2:85889234..85889238, -
9.37e-99FFCP PHASE1:Hg19::chr10:81315944..81315951,-#_239a73af825730138dffc117c934ceb5p@chr10:81315944..81315951, -
9.37e-99FFCP PHASE2:Hg19::chr10:23631651..23631656,+#_239a73af825730138dffc117c934ceb5p@chr10:23631651..23631656, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316558..81316565,-#_239a73af825730138dffc117c934ceb5p@chr10:81316558..81316565, -
9.37e-99FFCP PHASE2:Hg19::chr2:85894661..85894668,+#_239a73af825730138dffc117c934ceb5p@chr2:85894661..85894668, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374587..81374595,+#_239a73af825730138dffc117c934ceb5p@chr10:81374587..81374595, +
9.37e-99FFCP PHASE1:Hg19::chr8:22020085..22020093,+#_239a73af825730138dffc117c934ceb5p12@SFTPC
9.37e-99FFCP PHASE1:Hg19::chr10:81316132..81316137,-#_239a73af825730138dffc117c934ceb5p@chr10:81316132..81316137, -
9.37e-99FFCP PHASE2:Hg19::chr6:32150708..32150711,-#_239a73af825730138dffc117c934ceb5p7@AGER
9.37e-99FFCP PHASE2:Hg19::chr2:85886515..85886520,-#_239a73af825730138dffc117c934ceb5p@chr2:85886515..85886520, -
9.37e-99FFCP PHASE2:Hg19::chr10:81316764..81316776,-#_239a73af825730138dffc117c934ceb5p@chr10:81316764..81316776, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316753..81316759,-#_239a73af825730138dffc117c934ceb5p@chr10:81316753..81316759, -
9.37e-99FFCP PHASE1:Hg19::chr10:81374752..81374761,+#_239a73af825730138dffc117c934ceb5p@chr10:81374752..81374761, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316023..81316032,-#_239a73af825730138dffc117c934ceb5p@chr10:81316023..81316032, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021482..22021493,+#_239a73af825730138dffc117c934ceb5p@chr8:22021482..22021493, +
9.37e-99FFCP PHASE2:Hg19::chr10:81374462..81374469,+#_239a73af825730138dffc117c934ceb5p@chr10:81374462..81374469, +
9.37e-99FFCP PHASE2:Hg19::chr8:22021526..22021532,+#_239a73af825730138dffc117c934ceb5p@chr8:22021526..22021532, +
9.37e-99FFCP PHASE2:Hg19::chr6:32148869..32148878,-#_239a73af825730138dffc117c934ceb5p@chr6:32148869..32148878, -
9.37e-99FFCP PHASE1:Hg19::chr10:23631651..23631656,+#_239a73af825730138dffc117c934ceb5p@chr10:23631651..23631656, +
9.37e-99FFCP PHASE1:Hg19::chr2:85892915..85892916,-#_239a73af825730138dffc117c934ceb5p40@SFTPB
9.37e-99FFCP PHASE1:Hg19::chr10:81316558..81316565,-#_239a73af825730138dffc117c934ceb5p@chr10:81316558..81316565, -
9.37e-99FFCP PHASE1:Hg19::chr8:22021903..22021951,-#_239a73af825730138dffc117c934ceb5p@chr8:22021903..22021951, -
9.37e-99FFCP PHASE2:Hg19::chr8:22020994..22020998,+#_239a73af825730138dffc117c934ceb5p@chr8:22020994..22020998, +
9.37e-99FFCP PHASE1:Hg19::chr3:127109563..127109564,-#_239a73af825730138dffc117c934ceb5p2@ENST00000488425, p2@uc003ejj.2
9.37e-99FFCP PHASE1:Hg19::chr10:81316764..81316776,-#_239a73af825730138dffc117c934ceb5p@chr10:81316764..81316776, -
9.37e-99FFCP PHASE1:Hg19::chr6:117746871..117746882,-#_239a73af825730138dffc117c934ceb5p10@ROS1
9.37e-99FFCP PHASE1:Hg19::chr2:85885348..85885355,-#_239a73af825730138dffc117c934ceb5p@chr2:85885348..85885355, -
9.37e-99FFCP PHASE2:Hg19::chr2:85892885..85892890,-#_239a73af825730138dffc117c934ceb5p23@SFTPB
9.37e-99FFCP PHASE2:Hg19::chr10:81374819..81374828,+#_239a73af825730138dffc117c934ceb5p@chr10:81374819..81374828, +
9.37e-99FFCP PHASE1:Hg19::chr10:81374462..81374469,+#_239a73af825730138dffc117c934ceb5p@chr10:81374462..81374469, +
9.37e-99FFCP PHASE2:Hg19::chr10:81316041..81316047,-#_239a73af825730138dffc117c934ceb5p@chr10:81316041..81316047, -
9.37e-99FFCP PHASE1:Hg19::chr10:81316023..81316032,-#_239a73af825730138dffc117c934ceb5p@chr10:81316023..81316032, -
9.37e-99FFCP PHASE1:Hg19::chr2:85889234..85889238,-#_239a73af825730138dffc117c934ceb5p@chr2:85889234..85889238, -
9.37e-99FFCP PHASE2:Hg19::chr6:32149013..32149018,-#_239a73af825730138dffc117c934ceb5p@chr6:32149013..32149018, -
9.37e-99FFCP PHASE2:Hg19::chr8:22020196..22020202,+#_239a73af825730138dffc117c934ceb5p13@SFTPC
9.37e-99FFCP PHASE2:Hg19::chr2:85894689..85894696,+#_239a73af825730138dffc117c934ceb5p@chr2:85894689..85894696, +
9.37e-99FFCP PHASE1:Hg19::chr2:85894661..85894668,+#_239a73af825730138dffc117c934ceb5p@chr2:85894661..85894668, +
2.55e-98FFCP PHASE2:Hg19::chr2:120303717..120303738,+#_28ebc3a7e43297c6bc11a75c4b026da1p@chr2:120303717..120303738, +
2.55e-98FFCP PHASE2:Hg19::chr2:85886640..85886647,+#_28ebc3a7e43297c6bc11a75c4b026da1p@chr2:85886640..85886647, +
2.55e-98FFCP PHASE1:Hg19::chr6:8358321..8358327,+#_28ebc3a7e43297c6bc11a75c4b026da1p@chr6:8358321..8358327, +
2.55e-98FFCP PHASE2:Hg19::chr4:173916869..173916878,-#_28ebc3a7e43297c6bc11a75c4b026da1p3@uc003isx.1
2.55e-98FFCP PHASE2:Hg19::chr14:36921583..36921586,+#_28ebc3a7e43297c6bc11a75c4b026da1p@chr14:36921583..36921586, +
2.55e-98FFCP PHASE2:Hg19::chr12:96223975..96224010,-#_28ebc3a7e43297c6bc11a75c4b026da1p@chr12:96223975..96224010, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000101&oldid=3273746"