Personal tools

CL:0002593: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002593
|alt_id=
|name=smooth muscle cell of the internal thoracic artery
|namespace=cell
|def="A smooth muscle of the internal thoracic artery." [GOC:tfm]
|xref=
|is_a=CL:0002595
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:01:41Z
|def="A smooth muscle of the internal thoracic artery." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002593
|is_a=CL:0002595
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of the internal thoracic artery
|namespace=cell
|obo_creation_date=2011-03-06T05:01:41Z
|part_of=UBERON:0002456
|part_of=UBERON:0002456
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:29, 12 September 2014

Name:smooth muscle cell of the internal thoracic artery
Namespace:cell
Definition:"A smooth muscle of the internal thoracic artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:41Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002595(smooth muscle cell of the subclavian artery)
part_of:UBERON:0002456(internal thoracic artery)



Children


derives from:FF:0000173 (human smooth muscle cell of the internal thoracic artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)

Mouse (Mus musculus)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002593 (smooth muscle cell of the internal thoracic artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.52e-50FFCP PHASE1:Hg19::chr17:40025761..40025768,-#_b207298ddc25bde5ddf3881d1137d742p@chr17:40025761..40025768, -
4.52e-50FFCP PHASE2:Hg19::chr3:168864427..168864464,-#_b207298ddc25bde5ddf3881d1137d742p19@MECOM
4.52e-50FFCP PHASE2:Hg19::chr10:4822941..4822949,-#_b207298ddc25bde5ddf3881d1137d742p@chr10:4822941..4822949, -
4.52e-50FFCP PHASE1:Hg19::chr10:4822941..4822949,-#_b207298ddc25bde5ddf3881d1137d742p@chr10:4822941..4822949, -
4.52e-50FFCP PHASE2:Hg19::chr6:56507200..56507216,-#_b207298ddc25bde5ddf3881d1137d742p@chr6:56507200..56507216, -
4.52e-50FFCP PHASE2:Hg19::chr1:156697077..156697084,-#_b207298ddc25bde5ddf3881d1137d742p11@ISG20L2
4.52e-50FFCP PHASE1:Hg19::chr20:7755823..7755848,-#_b207298ddc25bde5ddf3881d1137d742p@chr20:7755823..7755848, -
4.52e-50FFCP PHASE1:Hg19::chr9:33798017..33798022,+#_b207298ddc25bde5ddf3881d1137d742p8@PRSS3
4.52e-50FFCP PHASE2:Hg19::chr1:215257098..215257110,+#_b207298ddc25bde5ddf3881d1137d742p@chr1:215257098..215257110, +
4.52e-50FFCP PHASE1:Hg19::chr3:168864427..168864464,-#_b207298ddc25bde5ddf3881d1137d742p19@MECOM
4.52e-50FFCP PHASE1:Hg19::chr6:56507200..56507216,-#_b207298ddc25bde5ddf3881d1137d742p@chr6:56507200..56507216, -
4.52e-50FFCP PHASE2:Hg19::chr5:149900740..149900745,+#_b207298ddc25bde5ddf3881d1137d742p32@NDST1
4.52e-50FFCP PHASE2:Hg19::chr16:73094120..73094122,-#_b207298ddc25bde5ddf3881d1137d742p@chr16:73094120..73094122, -
4.52e-50FFCP PHASE1:Hg19::chr1:156697077..156697084,-#_b207298ddc25bde5ddf3881d1137d742p11@ISG20L2
4.52e-50FFCP PHASE1:Hg19::chr16:73094120..73094122,-#_b207298ddc25bde5ddf3881d1137d742p@chr16:73094120..73094122, -
4.52e-50FFCP PHASE1:Hg19::chr1:215257098..215257110,+#_b207298ddc25bde5ddf3881d1137d742p@chr1:215257098..215257110, +
4.52e-50FFCP PHASE2:Hg19::chr17:40025761..40025768,-#_b207298ddc25bde5ddf3881d1137d742p@chr17:40025761..40025768, -
4.52e-50FFCP PHASE2:Hg19::chr20:7755823..7755848,-#_b207298ddc25bde5ddf3881d1137d742p@chr20:7755823..7755848, -
4.52e-50FFCP PHASE2:Hg19::chr9:33798017..33798022,+#_b207298ddc25bde5ddf3881d1137d742p8@PRSS3
4.52e-50FFCP PHASE1:Hg19::chr5:149900740..149900745,+#_b207298ddc25bde5ddf3881d1137d742p32@NDST1
1.64e-40FFCP PHASE2:Hg19::chr7:93519591..93519595,-#_89492d4869d9e15512f5a09655254efcp9@TFPI2
1.64e-40FFCP PHASE1:Hg19::chr7:93519591..93519595,-#_89492d4869d9e15512f5a09655254efcp9@TFPI2
1.89e-37FFCP PHASE1:Hg19::chr2:161237614..161237627,-#_fd59677bb0d92656df19f7b9ecfb0964p@chr2:161237614..161237627, -
1.89e-37FFCP PHASE2:Hg19::chr2:161237614..161237627,-#_fd59677bb0d92656df19f7b9ecfb0964p@chr2:161237614..161237627, -
6.83e-37FFCP PHASE2:Hg19::chr9:3898804..3898817,-#_df54ab5528a9082c1d1eae4f4619fac0p@chr9:3898804..3898817, -
6.83e-37FFCP PHASE1:Hg19::chr9:3898804..3898817,-#_df54ab5528a9082c1d1eae4f4619fac0p@chr9:3898804..3898817, -
2.45e-36FFCP PHASE2:Hg19::chr9:3898831..3898843,-#_13d4882b9e48e516f8ce1e077909d6c7p@chr9:3898831..3898843, -
2.45e-36FFCP PHASE1:Hg19::chr9:3898831..3898843,-#_13d4882b9e48e516f8ce1e077909d6c7p@chr9:3898831..3898843, -
3.61e-34FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_3e3e97da9bd756977809ea517303e068p@chr3:156258392..156258395, -
3.61e-34FFCP PHASE2:Hg19::chr17:75405541..75405547,-#_3e3e97da9bd756977809ea517303e068p@chr17:75405541..75405547, -
3.61e-34FFCP PHASE2:Hg19::chr10:14457224..14457226,+#_3e3e97da9bd756977809ea517303e068p@chr10:14457224..14457226, +
3.61e-34FFCP PHASE1:Hg19::chr10:14457224..14457226,+#_3e3e97da9bd756977809ea517303e068p@chr10:14457224..14457226, +
3.61e-34FFCP PHASE1:Hg19::chr17:75405541..75405547,-#_3e3e97da9bd756977809ea517303e068p@chr17:75405541..75405547, -
3.61e-34FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_3e3e97da9bd756977809ea517303e068p@chr3:156258392..156258395, -
5.04e-34FFCP PHASE2:Hg19::chr11:6423953..6423960,-#_85084a1a6d3915200a090d1dcc3459d1p19@APBB1
5.04e-34FFCP PHASE1:Hg19::chr11:6423953..6423960,-#_85084a1a6d3915200a090d1dcc3459d1p19@APBB1
5.04e-34FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_85084a1a6d3915200a090d1dcc3459d1p@chr4:120446538..120446544, -
5.04e-34FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_85084a1a6d3915200a090d1dcc3459d1p@chr4:120446538..120446544, -
7.05e-34FFCP PHASE1:Hg19::chr1:120285422..120285431,+#_54d9a8d5715ccb45794ad27ef4e89a61p10@PHGDH
7.05e-34FFCP PHASE2:Hg19::chr14:24664018..24664052,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr14:24664018..24664052, +
7.05e-34FFCP PHASE2:Hg19::chr11:29328382..29328391,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr11:29328382..29328391, +
7.05e-34FFCP PHASE1:Hg19::chr1:205264274..205264298,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr1:205264274..205264298, -
7.05e-34FFCP PHASE1:Hg19::chr11:29328382..29328391,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr11:29328382..29328391, +
7.05e-34FFCP PHASE1:Hg19::chr14:24664018..24664052,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr14:24664018..24664052, +
7.05e-34FFCP PHASE2:Hg19::chr12:88782727..88782732,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr12:88782727..88782732, -
7.05e-34FFCP PHASE2:Hg19::chr13:33498605..33498607,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr13:33498605..33498607, -
7.05e-34FFCP PHASE1:Hg19::chr1:25046857..25046871,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr1:25046857..25046871, +
7.05e-34FFCP PHASE2:Hg19::chr13:61626552..61626556,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr13:61626552..61626556, -
7.05e-34FFCP PHASE2:Hg19::chr7:134328418..134328421,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr7:134328418..134328421, +
7.05e-34FFCP PHASE1:Hg19::chr13:61626552..61626556,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr13:61626552..61626556, -
7.05e-34FFCP PHASE1:Hg19::chr12:88782727..88782732,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr12:88782727..88782732, -
7.05e-34FFCP PHASE2:Hg19::chr6:33288524..33288536,-#_54d9a8d5715ccb45794ad27ef4e89a61p19@DAXX
7.05e-34FFCP PHASE1:Hg19::chr13:33498605..33498607,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr13:33498605..33498607, -
7.05e-34FFCP PHASE2:Hg19::chr1:120285422..120285431,+#_54d9a8d5715ccb45794ad27ef4e89a61p10@PHGDH
7.05e-34FFCP PHASE2:Hg19::chr10:112206899..112206910,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr10:112206899..112206910, -
7.05e-34FFCP PHASE1:Hg19::chr10:112206899..112206910,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr10:112206899..112206910, -
7.05e-34FFCP PHASE2:Hg19::chr1:205264274..205264298,-#_54d9a8d5715ccb45794ad27ef4e89a61p@chr1:205264274..205264298, -
7.05e-34FFCP PHASE1:Hg19::chr7:134328418..134328421,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr7:134328418..134328421, +
7.05e-34FFCP PHASE2:Hg19::chr1:25046857..25046871,+#_54d9a8d5715ccb45794ad27ef4e89a61p@chr1:25046857..25046871, +
7.05e-34FFCP PHASE1:Hg19::chr6:33288524..33288536,-#_54d9a8d5715ccb45794ad27ef4e89a61p19@DAXX
1.64e-33FFCP PHASE2:Hg19::chr12:63025600..63025629,+#_4de15ef314cea32686648ab94c227651p@chr12:63025600..63025629, +
1.64e-33FFCP PHASE1:Hg19::chr12:63025600..63025629,+#_4de15ef314cea32686648ab94c227651p@chr12:63025600..63025629, +
3.59e-26FFCP PHASE2:Hg19::chr11:102668160..102668174,+#_3b96e314b29aad03ed845cc0c84de43dp@chr11:102668160..102668174, +
3.59e-26FFCP PHASE1:Hg19::chr11:102668160..102668174,+#_3b96e314b29aad03ed845cc0c84de43dp@chr11:102668160..102668174, +
4.08e-26FFCP PHASE1:Hg19::chr22:30639183..30639188,-#_38342a01ac8bc03543b251c2a9d5ba65p@chr22:30639183..30639188, -
4.08e-26FFCP PHASE2:Hg19::chr22:30639183..30639188,-#_38342a01ac8bc03543b251c2a9d5ba65p@chr22:30639183..30639188, -
4.32e-26FFCP PHASE2:Hg19::chr2:239336125..239336130,-#_448a9451fd0ae327aa58ae48c3495598p@chr2:239336125..239336130, -
4.32e-26FFCP PHASE1:Hg19::chr2:239336125..239336130,-#_448a9451fd0ae327aa58ae48c3495598p@chr2:239336125..239336130, -
9.18e-26FFCP PHASE1:Hg19::chr8:11325047..11325054,-#_5dd88b8391bd39f2588ba329944dab0dp17@FAM167A
9.18e-26FFCP PHASE1:Hg19::chr18:47087390..47087399,+#_5dd88b8391bd39f2588ba329944dab0dp7@LIPG
9.18e-26FFCP PHASE2:Hg19::chr16:30440504..30440514,-#_5dd88b8391bd39f2588ba329944dab0dp@chr16:30440504..30440514, -
9.18e-26FFCP PHASE1:Hg19::chr14:89060786..89060796,+#_5dd88b8391bd39f2588ba329944dab0dp11@ZC3H14
9.18e-26FFCP PHASE1:Hg19::chr16:56458896..56458907,-#_5dd88b8391bd39f2588ba329944dab0dp@chr16:56458896..56458907, -
9.18e-26FFCP PHASE1:Hg19::chr12:77436888..77436903,-#_5dd88b8391bd39f2588ba329944dab0dp@chr12:77436888..77436903, -
9.18e-26FFCP PHASE2:Hg19::chr19:11018763..11018773,+#_5dd88b8391bd39f2588ba329944dab0dp@chr19:11018763..11018773, +
9.18e-26FFCP PHASE2:Hg19::chr7:4722287..4722294,+#_5dd88b8391bd39f2588ba329944dab0dp9@FOXK1
9.18e-26FFCP PHASE1:Hg19::chr17:48625415..48625430,+#_5dd88b8391bd39f2588ba329944dab0dp5@SPATA20
9.18e-26FFCP PHASE1:Hg19::chr16:30440504..30440514,-#_5dd88b8391bd39f2588ba329944dab0dp@chr16:30440504..30440514, -
9.18e-26FFCP PHASE1:Hg19::chr9:107754023..107754028,-#_5dd88b8391bd39f2588ba329944dab0dp5@ENST00000457720
9.18e-26FFCP PHASE1:Hg19::chr3:120188917..120188936,+#_5dd88b8391bd39f2588ba329944dab0dp@chr3:120188917..120188936, +
9.18e-26FFCP PHASE1:Hg19::chr2:220548381..220548386,+#_5dd88b8391bd39f2588ba329944dab0dp@chr2:220548381..220548386, +
9.18e-26FFCP PHASE1:Hg19::chr19:10654854..10654878,+#_5dd88b8391bd39f2588ba329944dab0dp3@ATG4D
9.18e-26FFCP PHASE1:Hg19::chr4:74765097..74765105,-#_5dd88b8391bd39f2588ba329944dab0dp@chr4:74765097..74765105, -
9.18e-26FFCP PHASE2:Hg19::chr3:5059566..5059575,-#_5dd88b8391bd39f2588ba329944dab0dp@chr3:5059566..5059575, -
9.18e-26FFCP PHASE2:Hg19::chr19:19626515..19626522,+#_5dd88b8391bd39f2588ba329944dab0dp3@NDUFA13
9.18e-26FFCP PHASE1:Hg19::chr19:18543503..18543510,+#_5dd88b8391bd39f2588ba329944dab0dp@chr19:18543503..18543510, +
9.18e-26FFCP PHASE2:Hg19::chr14:74417096..74417108,-#_5dd88b8391bd39f2588ba329944dab0dp5@FAM161B
9.18e-26FFCP PHASE2:Hg19::chr10:3207484..3207495,-#_5dd88b8391bd39f2588ba329944dab0dp12@PITRM1
9.18e-26FFCP PHASE1:Hg19::chr10:3207484..3207495,-#_5dd88b8391bd39f2588ba329944dab0dp12@PITRM1
9.18e-26FFCP PHASE2:Hg19::chr12:120907847..120907858,+#_5dd88b8391bd39f2588ba329944dab0dp15@DYNLL1
9.18e-26FFCP PHASE1:Hg19::chr12:120907847..120907858,+#_5dd88b8391bd39f2588ba329944dab0dp15@DYNLL1
9.18e-26FFCP PHASE1:Hg19::chr19:11018763..11018773,+#_5dd88b8391bd39f2588ba329944dab0dp@chr19:11018763..11018773, +
9.18e-26FFCP PHASE1:Hg19::chr7:4722287..4722294,+#_5dd88b8391bd39f2588ba329944dab0dp9@FOXK1
9.18e-26FFCP PHASE2:Hg19::chr8:11325047..11325054,-#_5dd88b8391bd39f2588ba329944dab0dp17@FAM167A
9.18e-26FFCP PHASE2:Hg19::chr14:75083583..75083589,-#_5dd88b8391bd39f2588ba329944dab0dp3@ENST00000555313
9.18e-26FFCP PHASE1:Hg19::chr14:74417096..74417108,-#_5dd88b8391bd39f2588ba329944dab0dp5@FAM161B
9.18e-26FFCP PHASE2:Hg19::chr12:10856739..10856746,-#_5dd88b8391bd39f2588ba329944dab0dp36@CSDA
9.18e-26FFCP PHASE1:Hg19::chr12:10856739..10856746,-#_5dd88b8391bd39f2588ba329944dab0dp36@CSDA
9.18e-26FFCP PHASE2:Hg19::chr18:47087390..47087399,+#_5dd88b8391bd39f2588ba329944dab0dp7@LIPG
9.18e-26FFCP PHASE1:Hg19::chr3:5059566..5059575,-#_5dd88b8391bd39f2588ba329944dab0dp@chr3:5059566..5059575, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002593&oldid=3272200"