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{{CL
{{CL
|id=CL:0002436
|alt_id=
|name=mature CD4 single-positive thymocyte
|namespace=cell;;efo
|def="A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=
|is_a=CL:0000624
|synonym="T.4SP24-.Th" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-21T03:31:19Z
|def="A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0002432
|develops_from=CL:0002432
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002436
|is_a=CL:0000624
|is_obsolete=
|located_in=
|located_in=
|name=mature CD4 single-positive thymocyte
|namespace=cell;;efo
|obo_creation_date=2010-10-21T03:31:19Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="T.4SP24-.Th" RELATED []
|union_of=
|xref=
}}
}}

Revision as of 10:27, 12 September 2014

Name:mature CD4 single-positive thymocyte
Namespace:cell;;efo
Definition:"A mature CD4-positive, CD8-negative alpha-beta T cell found in the thymus that is CD24-low and has high expression of the T cell receptor." [GOC:tfm, http://www.immgen.org/index_content.html]
Synonyms: "T.4SP24-.Th" RELATED []
Created by:tmeehan
Creation date:2010-10-21T03:31:19Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000624(CD4-positive, alpha-beta T cell)
develops_from:CL:0002432(CD24-positive, CD4 single-positive thymocyte)



Children


develops from:CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002436 (mature CD4 single-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_a79e0388a4ed513453c8eb43eb3f18aap@chr2:162762361..162762364, +
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_a79e0388a4ed513453c8eb43eb3f18aap@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_a79e0388a4ed513453c8eb43eb3f18aap4@APOBEC4
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_a79e0388a4ed513453c8eb43eb3f18aap4@APOBEC4
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_81d03cdbef800edbb850a6dfb49a5140p@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_81d03cdbef800edbb850a6dfb49a5140p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_81d03cdbef800edbb850a6dfb49a5140p@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_81d03cdbef800edbb850a6dfb49a5140p@chrX:54476786..54476810, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_dfa71f9cec0d55b8e459de342fdd0696p@chr16:52032670..52032685, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_dfa71f9cec0d55b8e459de342fdd0696p@chr16:52032670..52032685, +
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_c7a4999073843d882c35a05af91066f8p1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_c7a4999073843d882c35a05af91066f8p@chr16:93777453..93777464, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_c7a4999073843d882c35a05af91066f8p1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_c7a4999073843d882c35a05af91066f8p@chr16:93777453..93777464, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_84eb6be36662725ae25188fb96dce124p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_84eb6be36662725ae25188fb96dce124p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_84eb6be36662725ae25188fb96dce124p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_84eb6be36662725ae25188fb96dce124p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_84eb6be36662725ae25188fb96dce124p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_84eb6be36662725ae25188fb96dce124p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_84eb6be36662725ae25188fb96dce124p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_84eb6be36662725ae25188fb96dce124p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_84eb6be36662725ae25188fb96dce124p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_84eb6be36662725ae25188fb96dce124p12@Grap2
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_84eb6be36662725ae25188fb96dce124p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_84eb6be36662725ae25188fb96dce124p@chr14:54827490..54827502, +
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_6edfede35b362f40018123e441c607c0p17@ANXA1
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_6edfede35b362f40018123e441c607c0p17@ANXA1
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_700a470422c0f7aa10e31b536021925fp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_700a470422c0f7aa10e31b536021925fp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_700a470422c0f7aa10e31b536021925fp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_700a470422c0f7aa10e31b536021925fp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_700a470422c0f7aa10e31b536021925fp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_700a470422c0f7aa10e31b536021925fp@chr11:118209514..118209525, +
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_3d04ddbbf868cbae74032f12f876be72p@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_3d04ddbbf868cbae74032f12f876be72p@chr14:53242248..53242261, +
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_8cbd18084db66811be66688e483b7cadp4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_8cbd18084db66811be66688e483b7cadp4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_24867a2da293b64dc1da76ac81cb2cf5p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_24867a2da293b64dc1da76ac81cb2cf5p@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_24867a2da293b64dc1da76ac81cb2cf5p10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_24867a2da293b64dc1da76ac81cb2cf5p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_24867a2da293b64dc1da76ac81cb2cf5p@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_24867a2da293b64dc1da76ac81cb2cf5p10@Grap2
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_13730cc27c675268d69a5905c619e7c0p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_13730cc27c675268d69a5905c619e7c0p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_13730cc27c675268d69a5905c619e7c0p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_13730cc27c675268d69a5905c619e7c0p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_13730cc27c675268d69a5905c619e7c0p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_13730cc27c675268d69a5905c619e7c0p@chr14:54817583..54817593, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_2f3ba2070dccbfaa048be716a8105075p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_2f3ba2070dccbfaa048be716a8105075p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_e9049dee7fbd2e0d434c31a777dd7368p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_e9049dee7fbd2e0d434c31a777dd7368p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_e9049dee7fbd2e0d434c31a777dd7368p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_e9049dee7fbd2e0d434c31a777dd7368p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_e9049dee7fbd2e0d434c31a777dd7368p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_e9049dee7fbd2e0d434c31a777dd7368p@chr5:123465955..123465966, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_2f34764bcfe69d0b222ec153ac49c088p@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_2f34764bcfe69d0b222ec153ac49c088p@chr2:11097490..11097500, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_58c0356f0b2a39fd9e86028d34647201p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_58c0356f0b2a39fd9e86028d34647201p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_58c0356f0b2a39fd9e86028d34647201p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_58c0356f0b2a39fd9e86028d34647201p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_58c0356f0b2a39fd9e86028d34647201p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_58c0356f0b2a39fd9e86028d34647201p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_58c0356f0b2a39fd9e86028d34647201p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_58c0356f0b2a39fd9e86028d34647201p@chr7:150943007..150943022, +
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_84bec6b46911e9ee9f283535b58ed6e9p1@ENSMUST00000103582
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_84bec6b46911e9ee9f283535b58ed6e9p1@ENSMUST00000103582
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_0fa41ae9f2ed821056bf41d37e9ff594p@chr2:73290853..73290866, +
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_0fa41ae9f2ed821056bf41d37e9ff594p@chr2:73290853..73290866, +
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_27a0b2b91a865b3637329deb830ac519p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_27a0b2b91a865b3637329deb830ac519p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_27a0b2b91a865b3637329deb830ac519p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_27a0b2b91a865b3637329deb830ac519p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_27a0b2b91a865b3637329deb830ac519p8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_27a0b2b91a865b3637329deb830ac519p8@Folr4
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_59674b8405a3590b80c2c1c97c9bc329p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_59674b8405a3590b80c2c1c97c9bc329p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_59674b8405a3590b80c2c1c97c9bc329p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_59674b8405a3590b80c2c1c97c9bc329p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_59674b8405a3590b80c2c1c97c9bc329p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_59674b8405a3590b80c2c1c97c9bc329p@chr11:87558695..87558707, +
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_eef3973b5faa7a3aac1ad4b3c0236b2fp@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_eef3973b5faa7a3aac1ad4b3c0236b2fp@chr4:32339235..32339263, +
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e5f3a143d66462122670341acbcd19dap3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e5f3a143d66462122670341acbcd19dap3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e5f3a143d66462122670341acbcd19dap5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e5f3a143d66462122670341acbcd19dap5@Cd6
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_adac4f78c85a30a46e3513f20e801c68p1@ENSMUST00000103733
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_adac4f78c85a30a46e3513f20e801c68p1@ENSMUST00000103733
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_1b28ada65781bbb7749a1956f8c2ca65p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_1b28ada65781bbb7749a1956f8c2ca65p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_1b28ada65781bbb7749a1956f8c2ca65p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_1b28ada65781bbb7749a1956f8c2ca65p3@Tnfrsf25
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_d4499e2c67c28bb15e097b47d75fdee1p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_d4499e2c67c28bb15e097b47d75fdee1p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE1:Mm9::chr12:3834874..3834877,+#_1496aab558c566b29afec36a74703bbap@chr12:3834874..3834877, +
3.91e-58FFCP PHASE2:Mm9::chr10:59842970..59842980,-#_1496aab558c566b29afec36a74703bbap3@Cdh23

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