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{{CL
{{CL
|id=CL:0000011
|alt_id=
|name=trunk neural crest cell
|namespace=cell
|def=
|xref=
|is_a=CL:0000333
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000011
|is_a=CL:0000333
|is_obsolete=
|located_in=
|located_in=
|name=trunk neural crest cell
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:11, 12 September 2014

Name:trunk neural crest cell
Namespace:cell


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000333(migratory neural crest cell)



Children


develops from:CL:0000336 (adrenal gland;;adrenal medulla chromaffin cell),CL:0000569 (cardiac mesenchymal cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000011 (trunk neural crest cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.91e-111FFCP PHASE1:Hg19::chr4:74765097..74765105,-#_1ccfb3a03437b084507f935b72ad9678p@chr4:74765097..74765105, -
8.91e-111FFCP PHASE2:Hg19::chr4:74765097..74765105,-#_1ccfb3a03437b084507f935b72ad9678p@chr4:74765097..74765105, -
1.55e-98FFCP PHASE1:Hg19::chr16:72981491..72981495,+#_0b0794e751ff650cf19bd76ddf6e5a6ap@chr16:72981491..72981495, +
1.55e-98FFCP PHASE2:Hg19::chr16:72981491..72981495,+#_0b0794e751ff650cf19bd76ddf6e5a6ap@chr16:72981491..72981495, +
9.04e-74FFCP PHASE1:Hg19::chr11:26290922..26290932,-#_8cbf74e0941106488951bf0c1226462cp@chr11:26290922..26290932, -
9.04e-74FFCP PHASE2:Hg19::chr11:26290922..26290932,-#_8cbf74e0941106488951bf0c1226462cp@chr11:26290922..26290932, -
9.13e-58FFCP PHASE1:Hg19::chr6:14671928..14671958,+#_d282b0a719e4027942936b70ff964901p@chr6:14671928..14671958, +
9.13e-58FFCP PHASE2:Hg19::chr6:14671928..14671958,+#_d282b0a719e4027942936b70ff964901p@chr6:14671928..14671958, +
1.88e-57FFCP PHASE1:Hg19::chr13:44794616..44794621,+#_5980c8d28d2ea2821e2b9e4096a32dfbp@chr13:44794616..44794621, +
1.88e-57FFCP PHASE2:Hg19::chr13:44794616..44794621,+#_5980c8d28d2ea2821e2b9e4096a32dfbp@chr13:44794616..44794621, +
3.14e-56FFCP PHASE1:Hg19::chr9:118454273..118454278,+#_608f7a8e15835fd4b07385aed5a3d0cfp@chr9:118454273..118454278, +
3.14e-56FFCP PHASE2:Hg19::chr9:118454273..118454278,+#_608f7a8e15835fd4b07385aed5a3d0cfp@chr9:118454273..118454278, +
3.1e-50FFCP PHASE1:Hg19::chr5:99385675..99385684,-#_23a6f79bc95ed7203fa2544a19ffc47bp@chr5:99385675..99385684, -
3.1e-50FFCP PHASE2:Hg19::chr5:99385675..99385684,-#_23a6f79bc95ed7203fa2544a19ffc47bp@chr5:99385675..99385684, -
3.1e-50FFCP PHASE1:Hg19::chr10:127911322..127911325,-#_23a6f79bc95ed7203fa2544a19ffc47bp@chr10:127911322..127911325, -
3.1e-50FFCP PHASE2:Hg19::chr10:127911322..127911325,-#_23a6f79bc95ed7203fa2544a19ffc47bp@chr10:127911322..127911325, -
3.1e-50FFCP PHASE1:Hg19::chr10:100013403..100013414,-#_23a6f79bc95ed7203fa2544a19ffc47bp@chr10:100013403..100013414, -
3.1e-50FFCP PHASE2:Hg19::chr10:100013403..100013414,-#_23a6f79bc95ed7203fa2544a19ffc47bp@chr10:100013403..100013414, -
3.11e-50FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_c5ecf28dcfa73b99dabf2efc2b797058p@chr2:238116338..238116342, -
3.11e-50FFCP PHASE2:Hg19::chr2:238116338..238116342,-#_c5ecf28dcfa73b99dabf2efc2b797058p@chr2:238116338..238116342, -
5.14e-50FFCP PHASE2:Hg19::chr5:82848954..82848959,-#_633fe1302cd12988f91ead303eed9c60p@chr5:82848954..82848959, -
5.14e-50FFCP PHASE1:Hg19::chr5:82848954..82848959,-#_633fe1302cd12988f91ead303eed9c60p@chr5:82848954..82848959, -
7.22e-50FFCP PHASE1:Hg19::chr11:102668601..102668604,-#_ed2464b531067c790a526849ba517bafp14@MMP1
7.22e-50FFCP PHASE2:Hg19::chr11:102668601..102668604,-#_ed2464b531067c790a526849ba517bafp14@MMP1
4.19e-45FFCP PHASE1:Hg19::chr4:38143865..38143904,-#_044e8e48721117c0f092ec09149f884bp@chr4:38143865..38143904, -
4.19e-45FFCP PHASE2:Hg19::chr4:38143865..38143904,-#_044e8e48721117c0f092ec09149f884bp@chr4:38143865..38143904, -
5.66e-45FFCP PHASE2:Hg19::chr9:118453758..118453772,+#_b89ff9c94b68de0c3268daecca5e3e8cp@chr9:118453758..118453772, +
5.66e-45FFCP PHASE1:Hg19::chr9:118453758..118453772,+#_b89ff9c94b68de0c3268daecca5e3e8cp@chr9:118453758..118453772, +
5.23e-38FFCP PHASE1:Hg19::chr3:193855009..193855029,+#_f9273e0b9c4f8d3462462beaf59179efp@chr3:193855009..193855029, +
5.23e-38FFCP PHASE2:Hg19::chr3:193855009..193855029,+#_f9273e0b9c4f8d3462462beaf59179efp@chr3:193855009..193855029, +
5.93e-38FFCP PHASE1:Hg19::chr6:169572316..169572322,+#_7c7c0ff079032217b0181713565936d7p@chr6:169572316..169572322, +
5.93e-38FFCP PHASE2:Hg19::chr6:169572316..169572322,+#_7c7c0ff079032217b0181713565936d7p@chr6:169572316..169572322, +
4.28e-34FFCP PHASE1:Hg19::chr8:49194425..49194429,+#_0f795424777fb9b8d315de94ed9d6654p@chr8:49194425..49194429, +
4.28e-34FFCP PHASE2:Hg19::chr8:49194425..49194429,+#_0f795424777fb9b8d315de94ed9d6654p@chr8:49194425..49194429, +
8.36e-34FFCP PHASE1:Hg19::chr3:141105560..141105572,-#_fecba8c943d4a7af043a41d507ea0198p@chr3:141105560..141105572, -
8.36e-34FFCP PHASE2:Hg19::chr3:141105560..141105572,-#_fecba8c943d4a7af043a41d507ea0198p@chr3:141105560..141105572, -
9.88e-34FFCP PHASE2:Hg19::chr1:183204105..183204116,+#_b8fb50ace67fb84ffeb305f5538be69cp@chr1:183204105..183204116, +
9.88e-34FFCP PHASE1:Hg19::chr1:183204105..183204116,+#_b8fb50ace67fb84ffeb305f5538be69cp@chr1:183204105..183204116, +
1.17e-33FFCP PHASE1:Hg19::chr10:25242626..25242636,-#_b16bc24683c4c057a7536996382acfa3p@chr10:25242626..25242636, -
1.17e-33FFCP PHASE2:Hg19::chr10:25242626..25242636,-#_b16bc24683c4c057a7536996382acfa3p@chr10:25242626..25242636, -
1.63e-33FFCP PHASE1:Hg19::chr2:236548265..236548276,+#_58628d62adfbd410f94454f13cde2641p@chr2:236548265..236548276, +
1.63e-33FFCP PHASE2:Hg19::chr2:236548265..236548276,+#_58628d62adfbd410f94454f13cde2641p@chr2:236548265..236548276, +
1.48e-30FFCP PHASE1:Hg19::chr16:49733031..49733072,-#_14f4e675a854fabdbf7cee781fc42df3p@chr16:49733031..49733072, -
1.48e-30FFCP PHASE2:Hg19::chr16:49733031..49733072,-#_14f4e675a854fabdbf7cee781fc42df3p@chr16:49733031..49733072, -
2.64e-28FFCP PHASE2:Hg19::chr16:88278862..88278869,-#_778289b4ab961c709aceacc2bbf117e8p@chr16:88278862..88278869, -
2.64e-28FFCP PHASE1:Hg19::chr16:88278862..88278869,-#_778289b4ab961c709aceacc2bbf117e8p@chr16:88278862..88278869, -
6.11e-28FFCP PHASE1:Hg19::chr2:67791424..67791436,+#_b3dd6cdf1dd365c3296c33586f59668ap@chr2:67791424..67791436, +
6.11e-28FFCP PHASE2:Hg19::chr2:67791424..67791436,+#_b3dd6cdf1dd365c3296c33586f59668ap@chr2:67791424..67791436, +
1.85e-27FFCP PHASE1:Hg19::chr9:118434979..118434996,-#_de3c9af37d8a4f32db00f8550ffd4ae8p@chr9:118434979..118434996, -
1.85e-27FFCP PHASE2:Hg19::chr9:118434979..118434996,-#_de3c9af37d8a4f32db00f8550ffd4ae8p@chr9:118434979..118434996, -
4.67e-27FFCP PHASE1:Hg19::chr4:38133975..38133988,-#_d12e3abb8779be5bf0ee15d1c500f054p@chr4:38133975..38133988, -
4.67e-27FFCP PHASE2:Hg19::chr4:38133975..38133988,-#_d12e3abb8779be5bf0ee15d1c500f054p@chr4:38133975..38133988, -
4.51e-26FFCP PHASE1:Hg19::chr2:67753505..67753511,-#_bf91c49b1d0aa2a96cb42ce732d24702p@chr2:67753505..67753511, -
4.51e-26FFCP PHASE2:Hg19::chr2:67753505..67753511,-#_bf91c49b1d0aa2a96cb42ce732d24702p@chr2:67753505..67753511, -
5.56e-26FFCP PHASE1:Hg19::chr13:43938419..43938424,-#_f1ea6a62b6a26efd68a99d1cf55617c1p@chr13:43938419..43938424, -
5.56e-26FFCP PHASE2:Hg19::chr13:43938419..43938424,-#_f1ea6a62b6a26efd68a99d1cf55617c1p@chr13:43938419..43938424, -
7.14e-26FFCP PHASE1:Hg19::chr1:15850650..15850657,-#_a7aa3b6b719115be9ceeb48f160e6b8ap9@CASP9
7.14e-26FFCP PHASE1:Hg19::chr4:189122939..189122941,-#_a7aa3b6b719115be9ceeb48f160e6b8ap@chr4:189122939..189122941, -
7.14e-26FFCP PHASE2:Hg19::chr1:15850650..15850657,-#_a7aa3b6b719115be9ceeb48f160e6b8ap9@CASP9
7.14e-26FFCP PHASE2:Hg19::chr4:189122939..189122941,-#_a7aa3b6b719115be9ceeb48f160e6b8ap@chr4:189122939..189122941, -
7.14e-26FFCP PHASE1:Hg19::chr22:36940565..36940577,+#_a7aa3b6b719115be9ceeb48f160e6b8ap@chr22:36940565..36940577, +
7.14e-26FFCP PHASE2:Hg19::chr22:36940565..36940577,+#_a7aa3b6b719115be9ceeb48f160e6b8ap@chr22:36940565..36940577, +
9.82e-26FFCP PHASE1:Hg19::chr3:100580536..100580540,-#_16bda03c10caf1e2fd54c84c66dbdb7cp@chr3:100580536..100580540, -
9.82e-26FFCP PHASE2:Hg19::chr3:100580536..100580540,-#_16bda03c10caf1e2fd54c84c66dbdb7cp@chr3:100580536..100580540, -
1.11e-25FFCP PHASE1:Hg19::chr11:102665915..102665927,+#_948f06ba548fa3df4d589ab78a965efdp@chr11:102665915..102665927, +
1.11e-25FFCP PHASE2:Hg19::chr11:102665915..102665927,+#_948f06ba548fa3df4d589ab78a965efdp@chr11:102665915..102665927, +
2.09e-25FFCP PHASE2:Hg19::chr6:4359189..4359231,+#_6b53faa101533f4363fbbcaa997bd21dp@chr6:4359189..4359231, +
2.09e-25FFCP PHASE1:Hg19::chr6:4359189..4359231,+#_6b53faa101533f4363fbbcaa997bd21dp@chr6:4359189..4359231, +
8.95e-25FFCP PHASE1:Hg19::chr7:93941132..93941136,+#_e5f03cb7c0e64a23eedd449911eec85fp@chr7:93941132..93941136, +
8.95e-25FFCP PHASE2:Hg19::chr7:93941132..93941136,+#_e5f03cb7c0e64a23eedd449911eec85fp@chr7:93941132..93941136, +
1.64e-24FFCP PHASE1:Hg19::chr5:90576087..90576091,+#_0cae8b81ba8e0e6a947e38cb0e952850p@chr5:90576087..90576091, +
1.64e-24FFCP PHASE2:Hg19::chr5:90576087..90576091,+#_0cae8b81ba8e0e6a947e38cb0e952850p@chr5:90576087..90576091, +
4.21e-24FFCP PHASE1:Hg19::chr11:65083939..65083963,-#_b01181f49a442f604ab39188a5a4ababp@chr11:65083939..65083963, -
4.21e-24FFCP PHASE2:Hg19::chr11:65083939..65083963,-#_b01181f49a442f604ab39188a5a4ababp@chr11:65083939..65083963, -
7.2e-24FFCP PHASE2:Hg19::chr5:52714725..52714740,-#_eb88c0a2794e38aa7f248574d74f0ed9p@chr5:52714725..52714740, -
7.2e-24FFCP PHASE1:Hg19::chr5:52714725..52714740,-#_eb88c0a2794e38aa7f248574d74f0ed9p@chr5:52714725..52714740, -
2.6e-23FFCP PHASE1:Hg19::chr8:49342856..49342863,-#_7ea3e4a46f8dee1194def755dc436786p1@LOC286068
2.6e-23FFCP PHASE2:Hg19::chr8:49342856..49342863,-#_7ea3e4a46f8dee1194def755dc436786p1@LOC286068
3.29e-23FFCP PHASE1:Hg19::chr17:38706154..38706158,+#_d179f81cbc3f5ae1c0bc7eb243c0ffe3p@chr17:38706154..38706158, +
3.29e-23FFCP PHASE2:Hg19::chr17:38706154..38706158,+#_d179f81cbc3f5ae1c0bc7eb243c0ffe3p@chr17:38706154..38706158, +
4.29e-23FFCP PHASE1:Hg19::chr3:193853004..193853009,+#_3f462c57d8f2561ed34c9929441050aap@chr3:193853004..193853009, +
4.29e-23FFCP PHASE2:Hg19::chr3:193853004..193853009,+#_3f462c57d8f2561ed34c9929441050aap@chr3:193853004..193853009, +
6.42e-23FFCP PHASE2:Hg19::chr17:579567..579585,-#_ab22458e3c48a94c397802f88ab48409p4@VPS53
6.42e-23FFCP PHASE1:Hg19::chr17:579567..579585,-#_ab22458e3c48a94c397802f88ab48409p4@VPS53
1.42e-22FFCP PHASE2:Hg19::chr15:67420573..67420606,+#_9852e224231bb7602abea5fd026c2970p@chr15:67420573..67420606, +
1.42e-22FFCP PHASE1:Hg19::chr15:67420573..67420606,+#_9852e224231bb7602abea5fd026c2970p@chr15:67420573..67420606, +
4.97e-22FFCP PHASE1:Hg19::chr8:22249806..22249820,-#_20d66f2fbc276cfd8d449a445990136fp@chr8:22249806..22249820, -
4.97e-22FFCP PHASE2:Hg19::chr8:22249806..22249820,-#_20d66f2fbc276cfd8d449a445990136fp@chr8:22249806..22249820, -
6.62e-22FFCP PHASE1:Hg19::chr6:136336050..136336056,-#_9aebb1d97ea345c79ba6b56912d89422p@chr6:136336050..136336056, -
6.62e-22FFCP PHASE2:Hg19::chr6:136336050..136336056,-#_9aebb1d97ea345c79ba6b56912d89422p@chr6:136336050..136336056, -
8.82e-22FFCP PHASE1:Hg19::chr5:146861282..146861290,+#_0af93eca2c0417e972d9169079f269c5p@chr5:146861282..146861290, +
8.82e-22FFCP PHASE2:Hg19::chr5:146861282..146861290,+#_0af93eca2c0417e972d9169079f269c5p@chr5:146861282..146861290, +
1.59e-21FFCP PHASE1:Hg19::chr16:29283104..29283109,-#_2444a86995ee943a7a860b737841c9a4p@chr16:29283104..29283109, -
1.59e-21FFCP PHASE2:Hg19::chr16:29283104..29283109,-#_2444a86995ee943a7a860b737841c9a4p@chr16:29283104..29283109, -
1.05e-20FFCP PHASE2:Hg19::chr6:22113608..22113630,+#_d0224858a45eec3d8a21457ba34dca78p@chr6:22113608..22113630, +
1.05e-20FFCP PHASE1:Hg19::chr6:22113608..22113630,+#_d0224858a45eec3d8a21457ba34dca78p@chr6:22113608..22113630, +
1.28e-20FFCP PHASE1:Hg19::chr12:65998939..65998945,-#_06900b5458e4c2c633c905958fc3b322p@chr12:65998939..65998945, -
1.28e-20FFCP PHASE2:Hg19::chr12:65998939..65998945,-#_06900b5458e4c2c633c905958fc3b322p@chr12:65998939..65998945, -
1.34e-20FFCP PHASE2:Hg19::chr12:58145604..58145631,-#_35987f27149ff959b8fd86d0e1592f69p4@CDK4
1.34e-20FFCP PHASE1:Hg19::chr12:58145604..58145631,-#_35987f27149ff959b8fd86d0e1592f69p4@CDK4

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