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motif without matrices
[[Swissregulon:SRY.p1]]
[[Swissregulon:HOX(A,B,D)3.p1]]
doubled top motif tables
CNhs10855 & CNhs11062
CNhs11245 & CNhs11183
CNhs11248 & CNhs11185
CNhs11772 & CNhs12996
CNhs11781 & CNhs12997
{{REVISIONTIMESTAMP}}
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0 | yes }}
{{CURRENTTIMESTAMP}}
<html>
<html>
<style type="text/css"> 
.rotate90 {
  -webkit-transform: rotate(-90deg);
  -moz-transform: rotate(-90deg);
-webkit-transform-origin: 6px 18px;
-moz-transform-origin: 6px 18px;
width:1px;
}
.highlight { background-color: yellow }
</style>
<script type="text/javascript">
$(document).ready(function() {
    var oTable =  $('#gene_exptable').dataTable({
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaSorting": [[1,'desc']],
"aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] }  , { "bSortable": false, "aTargets": [ 0 ] }]
});
$('#gene_exptable_wrapper .dataTables_scrollHead th').css("height", "100px").css("vertical-align", "bottom");
} );
</script>
</html>
{{#gene_exptable:Hg19|{{#ask:[[Category:FFCP]][[Short description::p1@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p1@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p2@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p2@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p3@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p3@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p4@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p4@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p5@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p5@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p6@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p6@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p7@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p7@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p8@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p8@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p9@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p9@ACTB,|searchlabel=}}|{{#ask:[[Category:FFCP]][[Short description::p10@ACTB]]|mainlabel=-|?phase1_expression|link=none|format=list|headers=hide|limit=1|intro=p10@ACTB,|searchlabel=}}
}}
<div id="gene_exptable_chart" style="float:left;width:600px;height:300px;"></div>
<div id="gene_exptable_chart_chkbox" style="float:left;"></div>
<div style="clear:both;"></div>
== gene mouse ==
<html>
<script language="javascript" type="text/javascript" src="/resource_browser/rb_js/highcharts/highcharts.js"></script>
<script language="javascript" type="text/javascript" src="/resource_browser/rb_js/highcharts/jquery.highchartTable.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/flot/jquery.flot.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
</style>
</style>
                      <script>


</html>
$(document).ready(function() {
    var oTable =  $('.ff_sample_list').dataTable({


});


<!--
});
 
</script>
== Enrichment analysis: top 100 MCL coexpression mm9 enriched with this ontology term v019 var. ==
</html>
{{#info:TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji}}
{{#ask:[[MCL_coexpression_mm9_ontology_enrichment_uberon_id::UBERON:0002048]]
|?MCL_coexpression_mm9_ontology_enrichment_uberon_p-value|format=ttable|sort=MCL_coexpression_mm9_ontology_enrichment_uberon_p-value|order=asc|limit=100|searchlabel=}}
 
 
 
{{#sparql:select * where { ?x ?y ?z . } LIMIT 100  |endpoint=http://localhost:8080/sparql/}}
 
{{#ask:[[Category:FFCP]][[Coexpression_cluster_id::C297]]|?id|?Short_description|?Phase1_expression|format=template|template=Datatable_sampledata|sep=,|limit=20000}}
 
{{#jstest:
{{#ask:[[Category:FF Ontology]][[Sample_species::Mouse (Mus musculus)]]|?id|?Name|?sample_tissue|?sample_cell_line=|?sample_cell_type|?rna_sample_type|format=template|template=Datatable_sampledata|sep=,|limit=2000}}
}}
 
{{#sparql:
SELECT * WHERE { ?x ?y ?z FILTER regex(?z, "GO")
} LIMIT 10
|endpoint=http://go.bio2rdf.org/sparql/
|footer=NO
}}
 
 
{{#sparql:select * where { ?x ?y ?z . } LIMIT 10  |endpoint=http://localhost:8080/sparql/}}
 
{{#sparql:
PREFIX prop:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/Property-3A>
PREFIX page:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/>
SELECT ?x,?y WHERE {
?x
prop:Sample_species
?y FILTER regex(?y, "OMO", "i" )
} LIMIT 100
|endpoint=http://localhost:8080/sparql/
|headers=Page,Id
|footer=NO
}}
 


-->
{{#ask:[[Concept:FF_samples_withname]]|[[Sample_species::Human (Homo sapiens)]]|mainlabel=FF ontology id|?Name|?Sample_category|?datafreeze_phase
|format=ttable|class=ff_sample_list|limit=20|searchlabel=}}

Latest revision as of 18:50, 20 February 2014

FF ontology idNameSample categoryDatafreeze phase
10000-101A1Clontech Human Universal Reference Total RNA, pool1tissues2
10001-101A3Clontech Mouse Universal Reference Total RNA, pool1tissues2
10002-101A5SABiosciences XpressRef Human Universal Total RNA, pool1tissues2
10003-101A7SABiosciences XpressRef Mouse Universal Total RNA, pool1tissues2
10004-101A9chicken embryo whole body, day10 (HH37)tissues-1
10005-101B1{{{name}}}{{{sample_category}}}-1
10006-101B2Universal RNA - Dog Normal Tissues Biochain, pool1tissues-1
10007-101B4Universal RNA - Human Normal Tissues Biochain, pool1tissues2
10008-101B6Universal RNA - Mouse Normal Tissues Biochain, pool1tissues2
10009-101B8Universal RNA - Rat Normal Tissues Biochain, pool1tissues-1
10010-101C1adipose tissue, adult, pool1tissues2
10011-101C2bladder, adult, pool1tissues2
10012-101C3brain, adult, pool1tissues2
10013-101C4cervix, adult, pool1tissues2
10014-101C5colon, adult, pool1tissues2
10015-101C6esophagus, adult, pool1tissues2
10016-101C7heart, adult, pool1tissues2
10017-101C8kidney, adult, pool1tissues2
10018-101C9liver, adult, pool1tissues2
10019-101D1lung, adult, pool1tissues2
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