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motif without matrices
[[Swissregulon:SRY.p1]]
[[Swissregulon:HOX(A,B,D)3.p1]]
doubled top motif tables
CNhs10855 & CNhs11062
CNhs11245 & CNhs11183
CNhs11248 & CNhs11185
CNhs11772 & CNhs12996
CNhs11781 & CNhs12997
{{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }}
{{CURRENTTIMESTAMP}}
|id=chr20:44409377..44409407,-
|ontology_enrichment_celltype=CL:0000322;3.09e-12;3!CL:0002601;1.30e-09;1!CL:0000319;1.30e-09;1!CL:0000082;2.50e-07;19
|ontology_enrichment_development=UBERON:0000358;4.08e-10;1!UBERON:0001041;7.06e-07;30
|ontology_enrichment_disease=DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16
|ontology_enrichment_uberon=UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19
<html>
<html>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
.table_title{
text-align:left;
font-size:small;
text-decoration:underline;
color:dimgray;
}
</style>
</style>
<script type="text/javascript">
                      <script>


$(document).ready(function() {
$(document).ready(function() {
     var oTable =  $('.enrichment_list').dataTable({
     var oTable =  $('.ff_sample_list').dataTable({
"sScrollY": "300px",
 
"bScrollCollapse": true,
"bPaginate": false,
"bFilter": false,
// "iDisplayLength": -1,
// "aLengthMenu": [[10, 25, 100, -1], [10, 25, 100, "All"]],
"aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] }  , { "bSortable": false, "aTargets": [ 0 ] },  { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }],
"aaSorting": [[ 1, "desc" ]]
});
});


$("#test").text("<wiki>[[CL:0000322]]</wiki>");
});
});
</script>
</script>
</html>
</html>


<div style="float:left;width:33%;">
{{#ask:[[Concept:FF_samples_withname]]|[[Sample_species::Human (Homo sapiens)]]|mainlabel=FF ontology id|?Name|?Sample_category|?datafreeze_phase
<table class="enrichment_list"><caption class="table_title">Cell Type</caption><html><thead></html>
|format=ttable|class=ff_sample_list|limit=20|searchlabel=}}
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
{{#arraymap:CL:0000322;3.09e-12;3!CL:0002601;1.30e-09;1!CL:0000319;1.30e-09;1!CL:0000082;2.50e-07;19|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
<html></tbody></html></table>
</div>
 
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Uber Anatomy</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
{{#arraymap:UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
<html></tbody></html></table>
</div>
 
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Disease</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
{{#arraymap:DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
<html></tbody></html></table>
</div>
 
<div style="clear:both;"></div>
<div id="test"></div>
 
<!--
{{#sparql:select * where { ?x ?y ?z . } LIMIT 100  |endpoint=http://localhost:8080/sparql/}}
 
{{#ask:[[Category:FFCP]][[Coexpression_cluster_id::C297]]|?id|?Short_description|?Phase1_expression|format=template|template=Datatable_sampledata|sep=,|limit=20000}}
 
{{#jstest:
{{#ask:[[Category:FF Ontology]][[Sample_species::Mouse (Mus musculus)]]|?id|?Name|?sample_tissue|?sample_cell_line=|?sample_cell_type|?rna_sample_type|format=template|template=Datatable_sampledata|sep=,|limit=2000}}
}}
-->
{{#sparql:
SELECT * WHERE { ?x ?y ?z FILTER regex(?z, "GO")
} LIMIT 10
|endpoint=http://go.bio2rdf.org/sparql/
|footer=NO
}}
 
 
 
 
 
 
<!--
{{#sparql:select * where { ?x ?y ?z . } LIMIT 10  |endpoint=http://localhost:8080/sparql/}}
 
{{#sparql:
PREFIX prop:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/Property-3A>
PREFIX page:<http://f5-webapp2/resource_browser/index.php/Special:URIResolver/>
SELECT ?x,?y WHERE {
?x
prop:Sample_species
?y FILTER regex(?y, "OMO", "i" )
} LIMIT 100
|endpoint=http://localhost:8080/sparql/
|headers=Page,Id
|footer=NO
}}
 
 
-->

Latest revision as of 18:50, 20 February 2014

FF ontology idNameSample categoryDatafreeze phase
10000-101A1Clontech Human Universal Reference Total RNA, pool1tissues2
10001-101A3Clontech Mouse Universal Reference Total RNA, pool1tissues2
10002-101A5SABiosciences XpressRef Human Universal Total RNA, pool1tissues2
10003-101A7SABiosciences XpressRef Mouse Universal Total RNA, pool1tissues2
10004-101A9chicken embryo whole body, day10 (HH37)tissues-1
10005-101B1{{{name}}}{{{sample_category}}}-1
10006-101B2Universal RNA - Dog Normal Tissues Biochain, pool1tissues-1
10007-101B4Universal RNA - Human Normal Tissues Biochain, pool1tissues2
10008-101B6Universal RNA - Mouse Normal Tissues Biochain, pool1tissues2
10009-101B8Universal RNA - Rat Normal Tissues Biochain, pool1tissues-1
10010-101C1adipose tissue, adult, pool1tissues2
10011-101C2bladder, adult, pool1tissues2
10012-101C3brain, adult, pool1tissues2
10013-101C4cervix, adult, pool1tissues2
10014-101C5colon, adult, pool1tissues2
10015-101C6esophagus, adult, pool1tissues2
10016-101C7heart, adult, pool1tissues2
10017-101C8kidney, adult, pool1tissues2
10018-101C9liver, adult, pool1tissues2
10019-101D1lung, adult, pool1tissues2
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