FFCP PHASE1:Hg19::chr9:140348397..140348421,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C127 | |||
|description=CAGE_peak_at_chr9:140348397..140348421,- | |||
|id=chr9:140348397..140348421,- | |||
|ontology_enrichment_celltype=CL:0002057!2.62e-27!42;CL:0000860!4.53e-25!45;CL:0002009!2.91e-20!65;CL:0002194!2.98e-19!63;CL:0000576!2.98e-19!63;CL:0000040!2.98e-19!63;CL:0000559!2.98e-19!63;CL:0000557!5.32e-18!71;CL:0000839!1.05e-16!70;CL:0000766!2.50e-16!76;CL:0002393!7.74e-15!9;CL:0002397!7.74e-15!9;CL:0000763!3.58e-13!112;CL:0000049!3.58e-13!112;CL:0002087!4.29e-10!119;CL:0000875!1.03e-09!3;CL:0002396!1.03e-09!3;CL:0002031!1.80e-09!124;CL:0000738!3.38e-09!140;CL:0000037!2.92e-08!172;CL:0000566!2.92e-08!172;CL:0002032!3.32e-08!165;CL:0000837!3.32e-08!165;CL:0000988!2.10e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0002262;6.30e-21;2!CL:1000398;6.30e-21;2!CL:0000322;1.50e-14;3!CL:0000082;2.17e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,5.70e-21,2;CL:1000398,5.70e-21,2;CL:0000322,1.60e-14,3;CL:0000082,2.17e-09,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;6.62e-41;1!DOID:1357;6.62e-41;1!DOID:1325;1.28e-23;7!DOID:3904;1.28e-23;7!DOID:0050615;4.17e-23;16!DOID:3910;4.21e-21;2!DOID:3905;1.24e-18;9!DOID:1324;1.27e-11;15!DOID:5409;2.94e-11;4!DOID:3908;2.86e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,6.62e-41,1;DOID:1357,6.62e-41,1;DOID:1325,1.28e-23,7;DOID:3904,1.28e-23,7;DOID:0050615,4.17e-23,16;DOID:3910,4.66e-21,2;DOID:3905,1.24e-18,9;DOID:1324,1.27e-11,15;DOID:5409,2.80e-11,4;DOID:3908,2.97e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002371!3.00e-15!80;UBERON:0002193!2.52e-14!112;UBERON:0002405!5.89e-14!115;UBERON:0002390!6.57e-14!102;UBERON:0003061!6.57e-14!102;UBERON:0001474!9.70e-14!86;UBERON:0004765!9.04e-11!101;UBERON:0001434!9.04e-11!101;UBERON:0003081!7.18e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001764;6.62e-41;1!UBERON:0001825;6.62e-41;1!UBERON:0004903;4.21e-21;2!UBERON:0002173;4.21e-21;2!UBERON:0002186;4.21e-21;2!UBERON:0001281;6.30e-21;2!UBERON:0003497;6.30e-21;2!UBERON:0003909;6.30e-21;2!UBERON:0003835;6.30e-21;2!UBERON:0004821;1.50e-14;3!UBERON:0007499;1.50e-14;3!UBERON:0003215;1.50e-14;3!UBERON:0010368;1.50e-14;3!UBERON:0009911;1.50e-14;3!UBERON:0002299;1.50e-14;3!UBERON:0006524;1.50e-14;3!UBERON:0008874;1.50e-14;3!UBERON:0002169;1.50e-14;3!UBERON:0004894;1.50e-14;3!UBERON:0001280;1.96e-14;3!UBERON:0004647;1.96e-14;3!UBERON:0009856;2.94e-11;4!UBERON:0004802;2.17e-09;19!UBERON:0000115;2.17e-09;19!UBERON:0005911;1.03e-08;36!UBERON:0002048;3.04e-08;22!UBERON:0004807;3.04e-08;22!UBERON:0000117;3.04e-08;22!UBERON:0000171;3.04e-08;22!UBERON:0000170;3.04e-08;22!UBERON:0003513;6.21e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,6.62e-41,1;UBERON:0001825,6.62e-41,1;UBERON:0004903,4.66e-21,2;UBERON:0002173,4.66e-21,2;UBERON:0002186,4.66e-21,2;UBERON:0001281,5.70e-21,2;UBERON:0003497,5.70e-21,2;UBERON:0003909,5.70e-21,2;UBERON:0003835,5.70e-21,2;UBERON:0004821,1.60e-14,3;UBERON:0003215,1.60e-14,3;UBERON:0010368,1.60e-14,3;UBERON:0009911,1.60e-14,3;UBERON:0002299,1.60e-14,3;UBERON:0006524,1.60e-14,3;UBERON:0008874,1.60e-14,3;UBERON:0002169,1.60e-14,3;UBERON:0004894,1.60e-14,3;UBERON:0001280,1.83e-14,3;UBERON:0004647,1.83e-14,3;UBERON:0005171,1.83e-14,3;UBERON:0004802,2.17e-09,19;UBERON:0000115,2.17e-09,19;UBERON:0000058,2.36e-09,19;UBERON:0002048,3.04e-08,22;UBERON:0000117,3.04e-08,22;UBERON:0000171,3.04e-08,22;UBERON:0000170,3.04e-08,22;UBERON:0005597,3.04e-08,22;UBERON:0000118,3.04e-08,22;UBERON:0002394,6.78e-08,6;UBERON:0003928,6.78e-08,6;UBERON:0007499,2.43e-07,25;UBERON:0009856,4.28e-07,26;UBERON:0003513,6.04e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0.581592955118259,0.377875943688809,0.242584061187816,0,0,0.309706370895104,0,0,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0,0,0,0.329851300186716,0,0.426224750532694,0,0,0,0,1.0429658368404,0,0,0,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0.450530678524519,0.16072558669708,0.285012743741249,0.99458338599545,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0.32592226663359,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0.161646056818812,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.12549761487054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229073192331831,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0.788662062837943,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.4010603412849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50132854320776,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.535928260312357,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:140348397..140348421,- | |||
}} |
Revision as of 04:20, 23 January 2014
Short description: | p@chr9:140348397..140348421, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:140348397..140348421, - |
Coexpression cluster: | C127_maxillary_small_hepatoblastoma_hepatocellular_alveolar_colon_argyrophil |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 5.70e-21 | 2 |
endothelial cell of hepatic sinusoid | 5.70e-21 | 2 |
pneumocyte | 1.60e-14 | 3 |
epithelial cell of lung | 2.17e-09 | 19 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 6.62e-41 | 1 |
paranasal sinus | 6.62e-41 | 1 |
bronchoalveolar duct junction | 4.66e-21 | 2 |
alveolar duct | 4.66e-21 | 2 |
bronchiole | 4.66e-21 | 2 |
hepatic sinusoid | 5.70e-21 | 2 |
abdomen blood vessel | 5.70e-21 | 2 |
sinusoid | 5.70e-21 | 2 |
abdominal segment blood vessel | 5.70e-21 | 2 |
pulmonary alveolus epithelium | 1.60e-14 | 3 |
alveolus | 1.60e-14 | 3 |
pulmonary lobule | 1.60e-14 | 3 |
lobule | 1.60e-14 | 3 |
alveolus of lung | 1.60e-14 | 3 |
alveolar system | 1.60e-14 | 3 |
pulmonary acinus | 1.60e-14 | 3 |
alveolar sac | 1.60e-14 | 3 |
alveolar wall | 1.60e-14 | 3 |
liver parenchyma | 1.83e-14 | 3 |
liver lobule | 1.83e-14 | 3 |
hepatic duct | 1.83e-14 | 3 |
respiratory tract epithelium | 2.17e-09 | 19 |
lung epithelium | 2.17e-09 | 19 |
duct | 2.36e-09 | 19 |
lung | 3.04e-08 | 22 |
respiratory tube | 3.04e-08 | 22 |
respiration organ | 3.04e-08 | 22 |
pair of lungs | 3.04e-08 | 22 |
lung primordium | 3.04e-08 | 22 |
lung bud | 3.04e-08 | 22 |
bile duct | 6.78e-08 | 6 |
digestive system duct | 6.78e-08 | 6 |
epithelial sac | 2.43e-07 | 25 |
sac | 4.28e-07 | 26 |
trunk blood vessel | 6.04e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 6.62e-41 | 1 |
maxillary sinus cancer | 6.62e-41 | 1 |
bronchus cancer | 1.28e-23 | 7 |
bronchogenic carcinoma | 1.28e-23 | 7 |
respiratory system cancer | 4.17e-23 | 16 |
lung adenocarcinoma | 4.66e-21 | 2 |
lung carcinoma | 1.24e-18 | 9 |
lung cancer | 1.27e-11 | 15 |
lung small cell carcinoma | 2.80e-11 | 4 |
non-small cell lung carcinoma | 2.97e-09 | 5 |