FFCP PHASE1:Hg19::chr8:22437965..22438000,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64236 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13992 | |||
|TSSclassifier=strong | |||
|UniProt=Q96JY6 | |||
|association_with_transcript=0bp_to_ENST00000409141,NM_176871,NM_198042,uc003xca.2,uc003xcb.2,uc003xcc.1_5end | |||
|coexpression_cluster_id=C2526 | |||
|description=CAGE_peak_3_at_PDLIM2_5end | |||
|id=chr8:22437965..22438000,+ | |||
|ontology_enrichment_celltype=CL:0000037!8.56e-76!172;CL:0000566!8.56e-76!172;CL:0002032!3.78e-72!165;CL:0000837!3.78e-72!165;CL:0000988!2.14e-68!182;CL:0000738!1.43e-63!140;CL:0002087!9.42e-63!119;CL:0002031!2.56e-58!124;CL:0000763!3.27e-45!112;CL:0000049!3.27e-45!112;CL:0000766!8.79e-40!76;CL:0002194!7.29e-36!63;CL:0000576!7.29e-36!63;CL:0000040!7.29e-36!63;CL:0000559!7.29e-36!63;CL:0000839!1.87e-34!70;CL:0002009!5.46e-34!65;CL:0000557!4.18e-31!71;CL:0002057!3.46e-30!42;CL:0000860!6.46e-27!45;CL:0000838!2.01e-23!52;CL:0000542!1.25e-22!53;CL:0000051!1.25e-22!53;CL:0000134!5.69e-14!358;CL:0002320!7.38e-13!365;CL:0000084!1.11e-11!25;CL:0000827!1.11e-11!25;CL:0000945!1.83e-11!24;CL:0000826!1.83e-11!24;CL:0000791!5.08e-11!18;CL:0000789!5.08e-11!18;CL:0002420!5.08e-11!18;CL:0002419!5.08e-11!18;CL:0000790!5.08e-11!18;CL:0000219!1.08e-09!390;CL:0002393!1.72e-09!9;CL:0002397!1.72e-09!9;CL:0000625!7.81e-08!11;CL:0000094!1.73e-07!8;CL:0000236!1.82e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000576;8.51e-31;48!CL:0000473;8.60e-29;39!CL:0000234;8.60e-29;39!CL:0000860;3.98e-28;33!CL:0002057;3.98e-28;33!CL:0000766;9.82e-25;69!CL:0000763;2.84e-21;100!CL:0002087;3.29e-19;104!CL:0000738;3.21e-17;136!CL:0000988;1.65e-13;177!CL:0000542;1.30e-12;53!CL:0000791;9.65e-12;18!CL:0000789;9.65e-12;18!CL:0002419;9.65e-12;18!CL:0000084;1.62e-11;25!CL:0000625;2.95e-10;11!CL:0000094;6.81e-10;8!CL:0002393;9.89e-09;6!CL:0002397;9.89e-09;6!CL:0000945;2.32e-08;24!CL:0000235;7.76e-08;6!CL:0000236;1.84e-07;13!CL:0000219;3.29e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.24e-93,168;CL:0002032,7.94e-90,161;CL:0000837,7.94e-90,161;CL:0000988,7.22e-87,177;CL:0002087,2.40e-79,115;CL:0000738,6.88e-79,136;CL:0002031,9.78e-72,120;CL:0000763,1.61e-65,108;CL:0000049,1.61e-65,108;CL:0000766,8.49e-60,72;CL:0002194,8.15e-57,59;CL:0000576,8.15e-57,59;CL:0000040,8.15e-57,59;CL:0000559,8.15e-57,59;CL:0002009,2.71e-54,61;CL:0000839,5.09e-52,66;CL:0000473,8.63e-49,48;CL:0000234,8.63e-49,48;CL:0000557,1.23e-47,67;CL:0000860,3.13e-42,42;CL:0002057,3.13e-42,42;CL:0000134,6.40e-25,354;CL:0002320,1.00e-23,361;CL:0000838,1.29e-20,52;CL:0000542,5.28e-20,53;CL:0000051,5.28e-20,53;CL:0000219,1.46e-19,386;CL:0000034,5.76e-15,441;CL:0000048,1.38e-14,427;CL:0000723,2.36e-14,433;CL:0002393,8.33e-13,9;CL:0002397,8.33e-13,9;CL:0000791,5.28e-12,18;CL:0000789,5.28e-12,18;CL:0002420,5.28e-12,18;CL:0002419,5.28e-12,18;CL:0000790,5.28e-12,18;CL:0000084,1.03e-11,25;CL:0000827,1.03e-11,25;CL:0000625,1.85e-10,11;CL:0000094,5.70e-10,8;CL:0000945,2.33e-08,24;CL:0000826,2.33e-08,24;CL:0000235,8.24e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002057;4.08e-30;42!CL:0000049;8.40e-19;108!CL:0000051;1.30e-12;53!CL:0000790;9.65e-12;18 | |||
|ontology_enrichment_disease=DOID:2531!1.45e-14!51;DOID:0060083!1.45e-14!51;DOID:1240!2.00e-13!39;DOID:8692!6.36e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.30e-13;31!DOID:1240;1.23e-11;39!DOID:2531;9.28e-08;51!DOID:0060083;9.28e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,7.49e-15,39;DOID:8692,4.01e-14,31;DOID:2531,1.78e-12,51;DOID:0060083,1.78e-12,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.13e-38!102;UBERON:0003061!1.13e-38!102;UBERON:0002193!1.04e-34!112;UBERON:0002371!1.23e-27!80;UBERON:0001474!5.70e-24!86;UBERON:0002405!7.38e-21!115;UBERON:0004765!4.69e-19!101;UBERON:0001434!4.69e-19!101;UBERON:0002384!9.28e-12!375;UBERON:0000178!3.36e-08!15;UBERON:0000179!3.36e-08!15;UBERON:0000463!3.36e-08!15;UBERON:0003081!6.12e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.05e-11;15!UBERON:0000179;1.05e-11;15!UBERON:0000463;1.05e-11;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.36e-55,98;UBERON:0003061,3.36e-55,98;UBERON:0002193,5.98e-51,108;UBERON:0002371,4.29e-41,76;UBERON:0002405,7.52e-40,93;UBERON:0001474,1.26e-36,82;UBERON:0004765,1.27e-31,90;UBERON:0001434,1.56e-26,100;UBERON:0002384,4.17e-22,371;UBERON:0003081,4.81e-16,203;UBERON:0000178,1.06e-11,15;UBERON:0000179,1.06e-11,15;UBERON:0000463,1.06e-11,15;UBERON:0002204,1.65e-09,167 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,2.09340350391728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22261449196722,1.72411237844886,1.33808328233255,11.8009283054671,2.30297638858328,9.44378352228064,0,0.30120591877825,0,9.99326887485891,1.84820002233648,1.46800219667424,9.41792194504192,4.8130667392834,5.4252717678963,4.03047853631864,4.53451132426571,3.60605794687861,7.70610665531693,6.04601509902095,4.85168122375632,4.18372266430232,3.28934310417461,2.78735733805593,4.89077066947656,3.84241059793651,2.36482229888585,3.7922024881028,3.22742341791913,5.41705946377367,5.83551252582075,5.45812300115692,2.02251136000576,3.67300670845083,2.56743221660875,3.83602275479425,2.63881040149373,3.59034583718937,2.98357325372886,1.7412554317715,2.26954089876456,3.11411124497787,5.27622197039161,3.65038042894141,3.25783267057675,3.63239701580021,2.57794345191295,2.53169909952708,20.2805074859464,21.4730342964694,13.4181533125361,18.0849096145857,15.7685737483582,12.5365957623723,19.0958538306637,21.4830011375017,20.2757210678744,3.51992488922645,2.18455444504853,1.77901850772711,4.69403244823158,3.2031678962881,2.29900975981793,2.64417949113945,2.86216126360609,1.1384259382189,1.17447437874188,1.52909291250092,2.64342657158052,2.80254281490768,1.58030450865046,0.786839080455332,0.786021525498329,1.43921049299656,11.3686816865661,1.95553359980154,0.473447805734733,0,7.79873198196215,5.59751224202191,4.2091439970888,5.68688113906533,7.30120522436348,9.10415432919148,10.1951500854279,14.3702009248641,7.24507714337631,1.03800594213442,1.87278579662799,5.22677619024884,5.21222976408804,3.44898444241729,2.74901956386104,2.27717722817553,3.82278497188916,3.25541726928209,3.8018081777935,2.55977702432214,2.94369205655162,3.74792179657038,6.39298580518846,5.74789597844733,2.41928091869679,1.87208137048455,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.654895377488563,0,0,2.59637914923747,5.22389211897802,5.58423434179234,1.43094374583205,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.573609190778008,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,2.6487785964879,0,0,0.219500570817251,0,1.00528972411631,0,0,0,0,0,0,0,0,0,0,0,9.1100292252337,2.57404691653161,6.98566462757023,0.93733833986777,0.335964256397719,0.425325291727159,0,0,1.15014803749563,0,0.264145302039678,0,0,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.378615870531,4.01805673145701,6.32501818449095,0,0,0,0,0,0,1.45710687191585,2.1673383622212,2.80315847317372,2.05348858047597,0,0,0,0,0,5.24304916763028,14.9580729602012,12.018049889645,0,0,0,0,0,0,0.35142424497814,0,0,0,0,0,0,0,0,5.58273670531796,6.47142602455851,5.33637789017222,0,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,1.09629938322967,1.3071772551245,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,1.08890984861323,0.376575203107117,0,0,0,0,14.7159806677329,13.7634697285628,10.8232965563091,5.00286728461357,9.87269455406866,8.43015304550532,9.72056587028607,15.8625035258854,0,0,0,0,0.28853842595289,0.213425530045242,3.50737800003409,4.19116680008915,9.00075239622124,11.0070263016419,0.649243880549111,7.30072663094993,3.19528550646469,4.38703708164465,10.0253790836027,12.5275915573186,5.94175877883688,3.63239472943886,2.98092366383228,12.0226870664518,19.9706496800498,21.4729063576719,19.5213495802933,21.2973023988224,0,0,7.30230331885154,0.66614393599564,0,0,0.879049075631364,0,9.02691412647575,0,0,0.296964680832639,0,0,0,0,0,0,0.398495976502139,2.48655523978033,0,0,0.246169610922139,0,0.449341755736634,0,13.3008816258987,0.295930216910801,14.3689855408164,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0.221158519862449,0.295547618953547,0,0,0,0.0769502585037971,0,0,0,0,0,0.0915975934018623,0.533034776018635,10.2193298195736,5.80826948661592,5.15256213890485,0,0,0,0,1.43042921082341,0,0,0,0,0,0.619202951523374,0,0,0,0,0.202203398942031,0,0.234264445725339,0.182454789215666,0,0,0,0,0.30607276163049,1.83241080922615,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0.171986032471617,0,0,0,0.290967049465258,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0.0824158583811665,0,0,0.592713324460491,0,0.136203406111576,0,0,0,0,0,0,0,0.551639951094387,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0.146552233678082,0,0,0,0,0,1.28144895081234,0,2.48543433208317,5.45782623993146,0.790446527591777,0.487170393523584,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|short_description=p3@PDLIM2 | |||
}} |
Revision as of 21:06, 22 January 2014
Short description: | p3@PDLIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDLIM2_5end |
Coexpression cluster: | C2526_acute_CD14_CD14CD16_Whole_CD4_biphenotypic_Dendritic |
Association with transcript: | 0bp_to_ENST00000409141, NM_176871, NM_198042, uc003xca.2, uc003xcb.2, uc003xcc.1_5end |
EntrezGene: | PDLIM2 |
HGNC: | 13992 |
UniProt: | Q96JY6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.36e-55 | 98 |
blood island | 3.36e-55 | 98 |
hemolymphoid system | 5.98e-51 | 108 |
bone marrow | 4.29e-41 | 76 |
immune system | 7.52e-40 | 93 |
bone element | 1.26e-36 | 82 |
skeletal element | 1.27e-31 | 90 |
skeletal system | 1.56e-26 | 100 |
connective tissue | 4.17e-22 | 371 |
lateral plate mesoderm | 4.81e-16 | 203 |
blood | 1.06e-11 | 15 |
haemolymphatic fluid | 1.06e-11 | 15 |
organism substance | 1.06e-11 | 15 |
musculoskeletal system | 1.65e-09 | 167 |
Ontology term | p-value | n |
---|---|---|
leukemia | 7.49e-15 | 39 |
myeloid leukemia | 4.01e-14 | 31 |
hematologic cancer | 1.78e-12 | 51 |
immune system cancer | 1.78e-12 | 51 |