FFCP PHASE1:Hg19::chr7:155601826..155601846,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6469 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10848 | |||
|TSSclassifier=strong | |||
|UniProt=C9JC48,F8WEH4,F8WB84 | |||
|association_with_transcript=-60bp_to_ENST00000430104,ENST00000435425,ENST00000441114,uc003wmh.1,uc003wmi.1,uc003wmj.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_SHH_5end | |||
|id=chr7:155601826..155601846,- | |||
|ontology_enrichment_celltype=CL:0000181!1.80e-12!12;CL:0000417!1.80e-12!12;CL:0000668!1.80e-12!12;CL:0000414!1.80e-12!12;CL:0000412!1.80e-12!12;CL:0000182!1.80e-12!12;CL:1000497!2.22e-09!18;CL:0002518!2.22e-09!18;CL:1000507!1.92e-08!12;CL:1000494!1.92e-08!12;CL:0000223!4.76e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.21e-32;12!CL:0000313;3.12e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.41e-32,12;CL:0000223,6.82e-15,58;CL:0000313,1.99e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.18e-38;13!UBERON:0004161;9.08e-35;11!UBERON:0001041;3.81e-20;30!UBERON:0003104;7.36e-15;31!CL:0000223;2.34e-10;58!UBERON:0006242;3.12e-09;1 | |||
|ontology_enrichment_disease=DOID:3493!9.09e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:2152;3.12e-09;1!DOID:299;7.83e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.99e-09,1;DOID:299,8.26e-08,25;DOID:305,3.48e-07,106 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002423;4.39e-37;25!UBERON:0002107;3.52e-33;19!UBERON:0006925;3.52e-33;19!UBERON:0002365;2.88e-19;31!UBERON:0002330;2.88e-19;31!UBERON:0002368;7.90e-17;33!UBERON:0005172;2.90e-13;52!UBERON:0005173;2.90e-13;52!UBERON:0000949;5.10e-13;43!UBERON:0004911;3.12e-09;1!UBERON:0002171;3.12e-09;1!UBERON:0006518;3.12e-09;1!UBERON:0008949;3.12e-09;1!UBERON:0000101;3.12e-09;1!UBERON:0002167;3.12e-09;1!UBERON:0002417;2.18e-08;58!UBERON:0000916;2.18e-08;58!UBERON:0002530;8.24e-08;57!UBERON:0001007;5.35e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,4.05e-37,25;UBERON:0000015,4.05e-37,25;UBERON:0002423,4.05e-37,25;UBERON:0006235,4.05e-37,25;UBERON:0004161,4.05e-37,25;UBERON:0008835,3.40e-35,22;UBERON:0003894,3.40e-35,22;UBERON:0009854,1.34e-33,23;UBERON:0002107,2.28e-33,19;UBERON:0006925,2.28e-33,19;UBERON:0008836,2.28e-33,19;UBERON:0007499,8.64e-31,25;UBERON:0009856,1.51e-29,26;UBERON:0003929,6.47e-23,54;UBERON:0002365,5.91e-20,31;UBERON:0002330,5.91e-20,31;UBERON:0005172,1.96e-19,54;UBERON:0005173,1.96e-19,54;UBERON:0005911,2.74e-19,82;UBERON:0002368,1.60e-17,35;UBERON:0002417,2.77e-17,60;UBERON:0000916,2.77e-17,60;UBERON:0000949,2.03e-16,45;UBERON:0005177,4.00e-15,101;UBERON:0004921,2.53e-14,118;UBERON:0001041,3.01e-13,87;UBERON:0001007,9.58e-13,145;UBERON:0001555,9.58e-13,145;UBERON:0007026,9.58e-13,145;UBERON:0002530,3.49e-12,59;UBERON:0009569,1.59e-11,112;UBERON:0004119,2.86e-11,160;UBERON:0000925,2.86e-11,160;UBERON:0006595,2.86e-11,160;UBERON:0004911,1.99e-09,1;UBERON:0002171,3.25e-09,1;UBERON:0006518,3.25e-09,1;UBERON:0008949,3.25e-09,1;UBERON:0000101,3.25e-09,1;UBERON:0002167,3.25e-09,1;UBERON:0002100,1.54e-08,199;UBERON:0003914,7.80e-08,117;UBERON:0005256,1.97e-07,122;UBERON:0003104,2.44e-07,160;UBERON:0009142,2.44e-07,160;UBERON:0001048,2.63e-07,160;UBERON:0000490,6.62e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,8.87285243752816,2.94848165003288,6.49868897349544,0,2.09080345523293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57117284469109,0,0,0,0,0,0,0.462092022626489,1.56869953835371,0,0.949964660035881,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0.671624264166535,0,0,0,0,0,3.19427136107939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57746442951761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.54991891428769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,1.07412704805365,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30586246527318,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,1.06726497369676,0,1.00863292007874,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,1.73323001075892,1.07140615895516,1.75249214020881,1.37798474120648,0,0,0,0,0,0,0,0,0,0,1.41850273138557,0.734364233889974,0,0,0,0,0,0,0,0,0,0,0,0,0,8.06037285229453,2.65013777824443,0,0,1.02652102730598,0,0.106787412567695,0,1.24271716604159,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0.205116364240755,0,0.138314504928436,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.263091094251396,0,0,0.078493092850514,0.628462359664008,0,0,0.431855182437243,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,1.67783147696688,0.294450700845729,0.487671699929078,0,0,0,0,0,0,0,0,0,0,0.308696632431779,1.09279780251979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07790242527904,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@SHH | |||
}} |
Revision as of 20:19, 22 January 2014
Short description: | p3@SHH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SHH_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -60bp_to_ENST00000430104, ENST00000435425, ENST00000441114, uc003wmh.1, uc003wmi.1, uc003wmj.1_5end |
EntrezGene: | SHH |
HGNC: | 10848 |
UniProt: | C9JC48F8WEH4F8WB84 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.41e-32 | 12 |
endodermal cell | 6.82e-15 | 58 |
serous secreting cell | 1.99e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.99e-09 | 1 |
adenocarcinoma | 8.26e-08 | 25 |
carcinoma | 3.48e-07 | 106 |