FFCP PHASE1:Hg19::chr7:142494920..142494955,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12174 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000390418,uc003wbn.3_5end | |||
|coexpression_cluster_id=C1120 | |||
|description=CAGE_peak_1_at_TRBJ2-6_5end | |||
|id=chr7:142494920..142494955,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.20e-39!53;CL:0000051!1.20e-39!53;CL:0000838!1.53e-38!52;CL:0000084!1.30e-20!25;CL:0000827!1.30e-20!25;CL:0000945!3.16e-16!24;CL:0000826!3.16e-16!24;CL:0000236!6.29e-15!14;CL:0002087!2.01e-14!119;CL:0000738!3.86e-14!140;CL:0000791!8.37e-14!18;CL:0000789!8.37e-14!18;CL:0002420!8.37e-14!18;CL:0002419!8.37e-14!18;CL:0000790!8.37e-14!18;CL:0000988!3.15e-12!182;CL:0000037!6.73e-12!172;CL:0000566!6.73e-12!172;CL:0002031!1.20e-11!124;CL:0002032!8.93e-10!165;CL:0000837!8.93e-10!165;CL:0000625!2.18e-07!11;CL:0000080!2.91e-07!6;CL:0000624!3.84e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000945;4.31e-34;24!CL:0000542;2.09e-32;53!CL:0000236;2.31e-32;13!CL:0000084;1.21e-22;25!CL:0000791;7.14e-14;18!CL:0000789;7.14e-14;18!CL:0002419;7.14e-14;18!CL:0002087;3.30e-09;104!CL:0000624;8.52e-08;6!CL:0000815;8.21e-07;2!CL:0000792;8.21e-07;2!CL:0002677;8.21e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.44e-58,53;CL:0000051,6.44e-58,53;CL:0000838,1.76e-55,52;CL:0000236,1.06e-35,14;CL:0000945,2.20e-34,24;CL:0000826,2.20e-34,24;CL:0002087,1.78e-24,115;CL:0000084,1.07e-22,25;CL:0000827,1.07e-22,25;CL:0002031,1.75e-21,120;CL:0000738,1.04e-20,136;CL:0000988,3.06e-18,177;CL:0000037,5.07e-16,168;CL:0002032,5.16e-16,161;CL:0000837,5.16e-16,161;CL:0000791,6.09e-14,18;CL:0000789,6.09e-14,18;CL:0002420,6.09e-14,18;CL:0002419,6.09e-14,18;CL:0000790,6.09e-14,18;CL:0000624,8.39e-08,6;CL:0000785,2.16e-07,2;CL:0000955,2.16e-07,2;CL:0000818,2.16e-07,2;CL:0000954,2.16e-07,2;CL:0000816,2.16e-07,2;CL:0000815,8.74e-07,2;CL:0000792,8.74e-07,2;CL:0002677,8.74e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;2.09e-32;53!CL:0000790;7.14e-14;18!CL:0000954;1.90e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060058;1.80e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.68e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.19e-07!15;UBERON:0000179!1.19e-07!15;UBERON:0000463!1.19e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.30e-07;2!UBERON:0005058;1.30e-07;2!UBERON:0009113;1.30e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.48e-08,4;UBERON:0005058,6.48e-08,4;UBERON:0009113,6.48e-08,4;UBERON:0003295,6.48e-08,4;UBERON:0005562,6.48e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.436882744260345,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0,0,9.32243550125005,9.35946719729382,9.28787219501415,0,3.45446458287491,0.619264493264304,0,0,0,0,1.56386155736164,0.293600439334847,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0.645484683583826,1.35426486594342,0,0.272906150057846,0,0,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,2.73069305631066,4.44754626931777,3.41384178053206,6.80673177961221,5.74752439954483,2.64417949113945,2.86216126360609,3.98449078376614,1.76171156811282,2.6759125968766,0,1.12101712596307,0.263384084775077,0.983548850569165,1.96505381374582,1.02800749499755,2.84217042164153,2.60737813306872,0,3.89653456815823,2.56244050835899,1.17842362989935,2.43687284041983,2.97884250141517,1.0247305578054,1.95089021339817,1.47994114143309,1.10540007114339,2.02862160014537,1.18629250529648,2.40786745280742,1.04535523804977,2.26618685395132,0.383220493601921,0.68725489096526,1.01207876807801,1.91139248594458,0.651083453856419,0,1.6563263098555,1.66382594500744,0,1.18388626022008,0.821127996921047,0.80642697289893,0.267440195783507,1.01377082717959,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0.419499436209906,0.275118041940067,0.626984899610432,0,0,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.44905874525234,0.225222960966644,1.53316637465883,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25046917581229,0.985153801009636,0.646882724578552,1.15508732651774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0.620304078368662,0.215714200818617,1.28073069364133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,1.0457418040996,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,1.06461206063404,0,0,0,0,0,0,0.255897791311334,0,0,0.78494864019923,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0.563391205064483,0.286822704408103,0.687743287091848,0,0.354761064070598,0,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,1.68471475667626,0.443430153536676,0.229723400206959,1.01489521846434,0.764637207142375,0.569647187174163,0.952927101831156,1.64544909234478,0,0,0,0,0,0,2.41544127663434,0,0.426851060090485,0.637705090915289,0.399158742865633,0.383010740264733,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0.33307196799782,0,0,0,0,29.7553836020867,0,0,0,0,0,0,0,1.48323486804084,0,0,0.828851746593443,0,0,0.246169610922139,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,4.74433805888995,3.45979029050208,3.44592433368003,0.067401132980677,0,0,2.37191225980366,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0.822251547880505,0,0.253243183823515,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,2.1110671705139,0.714695326373367,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.106787412567695,0,0.414239055347196,1.9846640872478,7.90446527591777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829412415681711,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0,0,0,0,5.59964708393804,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.192687675289379,0,0.159633859057151,0.205116364240755,0,0.345786262321089,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0.135075169236789,0.781078098613847,0.413373593002368,0.126831620387814,0,0,0,0,0,0,0,0,0,0,7.25974121601409,0,0,0.460409414939944,0,0.333694205676207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0.218559560503957,0.470317296361523,0,0,0,0,0,0,0.657887425858975,0.644578879735772,0,0,0.352894871715692,0,0,0.458729283404541,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0,4.52122368852043,4.15900585782248,0,0,0,0,0,1.0776328482334,0,0,0.244209805832924,0,0,0,0,0,0,0,1.61019034872821,0.961705476909699 | |||
|short_description=p1@TRBJ2-6 | |||
}} |
Revision as of 19:48, 22 January 2014
Short description: | p1@TRBJ2-6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBJ2-6_5end |
Coexpression cluster: | C1120_adult_hairy_mycosis_B_plasma_CD4_cord |
Association with transcript: | 0bp_to_ENST00000390418, uc003wbn.3_5end |
EntrezGene: | NA |
HGNC: | 12174 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.44e-58 | 53 |
common lymphoid progenitor | 6.44e-58 | 53 |
lymphoid lineage restricted progenitor cell | 1.76e-55 | 52 |
B cell | 1.06e-35 | 14 |
lymphocyte of B lineage | 2.20e-34 | 24 |
pro-B cell | 2.20e-34 | 24 |
nongranular leukocyte | 1.78e-24 | 115 |
T cell | 1.07e-22 | 25 |
pro-T cell | 1.07e-22 | 25 |
hematopoietic lineage restricted progenitor cell | 1.75e-21 | 120 |
leukocyte | 1.04e-20 | 136 |
hematopoietic cell | 3.06e-18 | 177 |
hematopoietic stem cell | 5.07e-16 | 168 |
hematopoietic oligopotent progenitor cell | 5.16e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.16e-16 | 161 |
mature alpha-beta T cell | 6.09e-14 | 18 |
alpha-beta T cell | 6.09e-14 | 18 |
immature T cell | 6.09e-14 | 18 |
mature T cell | 6.09e-14 | 18 |
immature alpha-beta T cell | 6.09e-14 | 18 |
CD4-positive, alpha-beta T cell | 8.39e-08 | 6 |
mature B cell | 2.16e-07 | 2 |
pre-B-II cell | 2.16e-07 | 2 |
transitional stage B cell | 2.16e-07 | 2 |
small pre-B-II cell | 2.16e-07 | 2 |
immature B cell | 2.16e-07 | 2 |
regulatory T cell | 8.74e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.74e-07 | 2 |
naive regulatory T cell | 8.74e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.48e-08 | 4 |
hemolymphoid system gland | 6.48e-08 | 4 |
thymic region | 6.48e-08 | 4 |
pharyngeal gland | 6.48e-08 | 4 |
thymus primordium | 6.48e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.68e-07 | 10 |