FFCP PHASE1:Hg19::chr7:64035097..64035108,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=24bp_to_uc003ttc.1_5end | |||
|coexpression_cluster_id=C4691 | |||
|description=CAGE_peak_3_at_uc003ttc.1_5end | |||
|id=chr7:64035097..64035108,+ | |||
|ontology_enrichment_celltype=CL:0000650!2.59e-11!3;CL:1000618!2.59e-11!3;CL:1001318!2.59e-11!3;CL:0002173!2.59e-11!3;CL:1000500!2.59e-11!3;CL:0000095!2.27e-10!17;CL:0000123!2.27e-10!17;CL:1000507!1.41e-09!12;CL:1000494!1.41e-09!12;CL:0002319!8.49e-09!25;CL:0000242!1.52e-08!2;CL:0000128!1.09e-07!7;CL:0000126!1.09e-07!7;CL:0000127!1.09e-07!7;CL:0002453!1.09e-07!7;CL:1000449!5.20e-07!16;CL:0000669!6.23e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.13e-56;2!CL:0000242;1.13e-56;2!CL:0000312;2.02e-23;5!CL:0000240;1.04e-19;6!CL:0000311;1.04e-19;6!CL:0000079;1.04e-19;6!CL:0000237;1.04e-19;6!CL:0000039;2.90e-17;7!CL:0000586;2.90e-17;7!CL:0000650;2.21e-15;2!CL:1000500;2.21e-15;2!CL:1000618;2.21e-15;2!CL:1001318;2.21e-15;2!CL:0002173;2.21e-15;2!CL:0000362;1.69e-13;9!CL:0002159;4.95e-09;14!CL:0000669;2.35e-08;4!CL:0000095;6.77e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,6.36e-57,2;CL:0000312,1.61e-23,5;CL:0000240,8.63e-20,6;CL:0000311,8.63e-20,6;CL:0000079,8.63e-20,6;CL:0000237,8.63e-20,6;CL:0000036,8.63e-20,6;CL:0000357,8.63e-20,6;CL:0000114,8.63e-20,6;CL:0000039,2.90e-17,7;CL:0000586,2.90e-17,7;CL:0000650,2.74e-15,2;CL:1000500,2.74e-15,2;CL:1000618,2.74e-15,2;CL:1001318,2.74e-15,2;CL:0002173,2.74e-15,2;CL:0000362,1.49e-13,9;CL:0002159,4.56e-09,14;CL:0000669,2.61e-08,4;CL:0000095,6.38e-07,17;CL:0000123,6.38e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000357;1.04e-19;6!CL:0000114;1.04e-19;6!UBERON:0009117;2.12e-12;10!UBERON:0005564;2.12e-12;10 | |||
|ontology_enrichment_disease=DOID:5409!5.95e-08!4;DOID:1325!7.45e-08!7;DOID:3904!7.45e-08!7 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.09e-12;22!DOID:2994;2.09e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.09e-12,22;DOID:2994,2.09e-12,22;DOID:305,7.18e-10,106;DOID:0050687,2.36e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0003567!2.59e-11!3;UBERON:0003838!2.59e-11!3;UBERON:0005169!2.59e-11!3;UBERON:0002321!2.59e-11!3;UBERON:0005215!2.59e-11!3;UBERON:0002303!2.59e-11!3;UBERON:0002319!2.59e-11!3;UBERON:0009773!1.41e-09!12;UBERON:0001231!1.41e-09!12;UBERON:0004810!1.41e-09!12;UBERON:0001851!3.17e-07!16;UBERON:0004211!5.20e-07!16;UBERON:0001285!5.20e-07!16;UBERON:0007684!5.20e-07!16;UBERON:0003220!5.20e-07!16;UBERON:0004208!5.20e-07!16;UBERON:0003891!6.23e-07!5;UBERON:0003586!6.23e-07!5;UBERON:0000483!7.24e-07!309;UBERON:0003075!7.69e-07!86;UBERON:0007284!7.69e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;2.21e-15;2!UBERON:0003838;2.21e-15;2!UBERON:0003586;2.21e-15;2!UBERON:0005169;2.21e-15;2!UBERON:0002321;2.21e-15;2!UBERON:0005215;2.21e-15;2!UBERON:0002303;2.21e-15;2!UBERON:0002319;2.21e-15;2!UBERON:0000473;3.06e-15;8!UBERON:0003135;2.30e-11;11!UBERON:0001003;1.71e-08;15!UBERON:0007376;1.71e-08;15!UBERON:0003891;2.35e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,2.74e-15,2;UBERON:0003838,2.74e-15,2;UBERON:0003586,2.74e-15,2;UBERON:0005169,2.74e-15,2;UBERON:0002321,2.74e-15,2;UBERON:0005215,2.74e-15,2;UBERON:0002303,2.74e-15,2;UBERON:0002319,2.74e-15,2;UBERON:0000473,3.06e-15,8;UBERON:0003135,2.30e-11,11;UBERON:0001003,1.59e-08,15;UBERON:0007376,1.59e-08,15;UBERON:0007383,1.59e-08,15;UBERON:0003891,2.61e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0.313454721478088,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0.221729397462564,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0,0,0.541892875087706,1.00337954770971,0,0,0.447749509444357,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262379999988587,0,0,0.508507300585533,0,0.344743373241465,0,0.520874984799877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,1.13843818411917,0,0.347119476670262,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,1.40500471742064,1.88397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57785949122191,0,0,0,0.231522474323834,0.489473409012935,0,0,0,0,0,0.506827321959218,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0.118193840883968,0,0,0,0,0,0,0,0,0.632054446930906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356760272332706,0,0.109940516745429,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,6.11887202996695,0,3.56960904096936,2.6721740526556,0.643264296743914,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@uc003ttc.1 | |||
}} |
Revision as of 17:09, 22 January 2014
Short description: | p3@uc003ttc.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_uc003ttc.1_5end |
Coexpression cluster: | C4691_teratocarcinoma_carcinoid_merkel_retinoblastoma_testicular_carcinosarcoma_small |
Association with transcript: | 24bp_to_uc003ttc.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 6.36e-57 | 2 |
keratinocyte | 1.61e-23 | 5 |
stratified squamous epithelial cell | 8.63e-20 | 6 |
keratin accumulating cell | 8.63e-20 | 6 |
stratified epithelial cell | 8.63e-20 | 6 |
keratinizing barrier epithelial cell | 8.63e-20 | 6 |
epithelial fate stem cell | 8.63e-20 | 6 |
stratified epithelial stem cell | 8.63e-20 | 6 |
surface ectodermal cell | 8.63e-20 | 6 |
germ line cell | 2.90e-17 | 7 |
germ cell | 2.90e-17 | 7 |
mesangial cell | 2.74e-15 | 2 |
kidney interstitial cell | 2.74e-15 | 2 |
juxtaglomerular complex cell | 2.74e-15 | 2 |
renal interstitial pericyte | 2.74e-15 | 2 |
extraglomerular mesangial cell | 2.74e-15 | 2 |
epidermal cell | 1.49e-13 | 9 |
general ecto-epithelial cell | 4.56e-09 | 14 |
pericyte cell | 2.61e-08 | 4 |
neuron associated cell | 6.38e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.38e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 2.74e-15 | 2 |
abdominal segment connective tissue | 2.74e-15 | 2 |
trunk connective tissue | 2.74e-15 | 2 |
interstitial tissue | 2.74e-15 | 2 |
extraglomerular mesangium | 2.74e-15 | 2 |
kidney interstitium | 2.74e-15 | 2 |
juxtaglomerular apparatus | 2.74e-15 | 2 |
mesangium | 2.74e-15 | 2 |
testis | 3.06e-15 | 8 |
male reproductive organ | 2.30e-11 | 11 |
skin epidermis | 1.59e-08 | 15 |
outer epithelium | 1.59e-08 | 15 |
enveloping layer of ectoderm | 1.59e-08 | 15 |
stroma | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.09e-12 | 22 |
germ cell cancer | 2.09e-12 | 22 |
carcinoma | 7.18e-10 | 106 |
cell type cancer | 2.36e-07 | 143 |