FFCP PHASE1:Hg19::chr7:20686988..20686999,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=340273 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=46 | |||
|TSSclassifier=strong | |||
|UniProt=B5MD19,Q2M3G0,A7BKA4,F8QQP8 | |||
|association_with_transcript=22bp_to_ENST00000406935,ENST00000443026,NM_001163942,NM_001163993,NM_178559,uc003suv.3,uc003suw.3,uc011jyi.1_5end | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_3_at_ABCB5_5end | |||
|id=chr7:20686988..20686999,+ | |||
|ontology_enrichment_celltype=CL:0000147!1.69e-34!14;CL:0000148!1.27e-24!10;CL:0000541!1.27e-24!10;CL:0002567!4.23e-16!3;CL:0000325!5.71e-16!39;CL:0000710!4.11e-15!20;CL:0000149!7.94e-12!4;CL:0000075!7.52e-11!27;CL:0002077!1.22e-08!33;CL:0002586!1.93e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.10e-96;10!CL:0000147;6.48e-69;14!CL:0002567;3.01e-59;3!CL:0000710;2.83e-48;20!CL:0000075;9.05e-36;27!CL:0002077;4.78e-25;34!CL:0002566;2.55e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.96e-96,10;CL:0000541,1.96e-96,10;CL:0000147,6.16e-69,14;CL:0002567,2.73e-59,3;CL:0000710,2.73e-48,20;CL:0000075,8.82e-36,27;CL:0002077,2.07e-28,34;CL:0000333,1.89e-22,41;CL:0002566,2.30e-21,1;CL:0000133,8.75e-16,59;CL:0000221,5.62e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000133;1.06e-08;59!UBERON:0003056;7.26e-08;3!CL:0000221;2.45e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!2.86e-11!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;4.96e-40;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,5.49e-40,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!1.68e-09!5;UBERON:0005388!1.68e-09!5;UBERON:0001802!1.68e-09!5;UBERON:0000970!4.14e-08!20;UBERON:0002104!1.08e-07!21;UBERON:0006947!1.64e-07!3;UBERON:0004054!1.64e-07!3;UBERON:0001781!1.93e-07!3;UBERON:0001782!1.93e-07!3;UBERON:0005424!1.93e-07!3;UBERON:0007625!4.07e-07!11;UBERON:0000020!5.67e-07!23 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,10.7946420296687,9.93169906451522,8.20522130470329,1.71072446022705,13.0590915733221,10.5120070245371,29.4401225609496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0.325378394664303,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707660516026713,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.03740322970734,2.28372266835974,0,0,0,0,0,0,0.189403005275089,0.754703705257725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.39246546425257,0,0,0,0,0,4.43154573895269,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@ABCB5 | |||
}} |
Revision as of 15:57, 22 January 2014
Short description: | p3@ABCB5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ABCB5_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 22bp_to_ENST00000406935, ENST00000443026, NM_001163942, NM_001163993, NM_178559, uc003suv.3, uc003suw.3, uc011jyi.1_5end |
EntrezGene: | ABCB5 |
HGNC: | 46 |
UniProt: | B5MD19Q2M3G0A7BKA4F8QQP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.96e-96 | 10 |
melanoblast | 1.96e-96 | 10 |
pigment cell | 6.16e-69 | 14 |
light melanocyte | 2.73e-59 | 3 |
neurecto-epithelial cell | 2.73e-48 | 20 |
columnar/cuboidal epithelial cell | 8.82e-36 | 27 |
ecto-epithelial cell | 2.07e-28 | 34 |
migratory neural crest cell | 1.89e-22 | 41 |
dark melanocyte | 2.30e-21 | 1 |
neurectodermal cell | 8.75e-16 | 59 |
ectodermal cell | 5.62e-13 | 72 |
Ontology term | p-value | n |
---|---|---|
melanoma | 5.49e-40 | 2 |