FFCP PHASE1:Hg19::chr6:123110389..123110441,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10924 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17389 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000487215_5end | |||
|coexpression_cluster_id=C2841 | |||
|description=CAGE_peak_1_at_SMPDL3A_5end | |||
|id=chr6:123110389..123110441,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.96e-24!42;CL:0000860!6.02e-23!45;CL:0002194!2.89e-21!63;CL:0000576!2.89e-21!63;CL:0000040!2.89e-21!63;CL:0000559!2.89e-21!63;CL:0002009!4.03e-21!65;CL:0000766!4.32e-20!76;CL:0000557!9.24e-20!71;CL:0000839!6.88e-19!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.40e-17;33!CL:0002057;1.40e-17;33!CL:0000576;2.87e-15;48!CL:0000473;3.63e-15;39!CL:0000234;3.63e-15;39!CL:0000766;1.54e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.47e-24,48;CL:0000234,1.47e-24,48;CL:0000860,3.86e-24,42;CL:0002057,3.86e-24,42;CL:0002194,6.22e-22,59;CL:0000576,6.22e-22,59;CL:0000040,6.22e-22,59;CL:0000559,6.22e-22,59;CL:0002009,9.50e-22,61;CL:0000766,1.56e-20,72;CL:0000557,2.79e-20,67;CL:0000839,2.40e-19,66 | |||
|ontology_enrichment_development_v019=CL:0002057;1.22e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.04e-25!659;UBERON:0000062!1.09e-22!511;UBERON:0000467!1.42e-20!625;UBERON:0000480!2.92e-20!626;UBERON:0002050!1.03e-18!605;UBERON:0005423!1.03e-18!605;UBERON:0000923!2.13e-18!604;UBERON:0005291!2.13e-18!604;UBERON:0006598!2.13e-18!604;UBERON:0002532!2.13e-18!604;UBERON:0000922!1.06e-17!612;UBERON:0002371!1.65e-16!80;UBERON:0001474!4.67e-15!86;UBERON:0002405!3.53e-14!115;UBERON:0002390!5.28e-14!102;UBERON:0003061!5.28e-14!102;UBERON:0004765!1.21e-13!101;UBERON:0001434!1.21e-13!101;UBERON:0002193!5.60e-13!112;UBERON:0007023!6.66e-13!115;UBERON:0002204!8.02e-13!167;UBERON:0000926!7.45e-11!448;UBERON:0004120!7.45e-11!448;UBERON:0006603!7.45e-11!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002050,1.14e-19,564;UBERON:0000923,1.45e-19,560;UBERON:0010316,1.45e-19,560;UBERON:0005291,1.45e-19,560;UBERON:0006598,1.45e-19,560;UBERON:0010317,1.45e-19,560;UBERON:0002532,1.45e-19,560;UBERON:0005423,1.30e-17,581;UBERON:0002371,8.62e-17,76;UBERON:0000922,6.85e-16,592;UBERON:0001474,2.95e-15,82;UBERON:0004765,9.88e-15,90;UBERON:0002390,3.56e-14,98;UBERON:0003061,3.56e-14,98;UBERON:0001434,4.63e-14,100;UBERON:0002405,1.42e-13,93;UBERON:0002204,1.74e-13,167;UBERON:0002193,4.30e-13,108;UBERON:0007023,8.91e-13,114;UBERON:0000926,1.23e-10,315;UBERON:0004120,1.23e-10,315;UBERON:0006603,1.23e-10,315;UBERON:0011216,9.63e-07,223 | |||
|phase1_expression=71.7629598118699,46.2457131604524,46.5149533516705,61.0447119954096,75.5364249582116,39.2552335845166,32.9289841618804,17.6881564559513,38.6554729735761,6.38908234903923,3.48900583986214,10.9220686065086,15.0347177590219,11.7578035312044,29.1629690640566,26.2206807116192,31.3401154572468,34.3245742482065,31.2276991225924,9.23407935575909,9.9960338709684,3.44800193625897,9.15955158819382,7.66496780408152,9.41569796961021,6.18948586558405,6.07544361929599,6.0607301611533,70.0188412791049,36.8476222173324,54.1856431606266,9.19421224478927,5.12050061923025,3.32778609150109,0.154934401160603,2.70121541726101,0.293600439334847,141.822824584161,187.308513937112,102.646141848598,65.159403003818,48.9079435688659,62.3332873674731,108.903280845894,75.9530646814507,74.7158908458474,162.932754870885,96.2132857971072,91.9827921558458,72.2107904728598,72.2373192412064,51.316643885823,144.103694547907,95.5317331704063,92.0900108841524,121.604551344523,93.8797156198989,78.4284960713345,175.998238113269,88.5764114730018,106.76930000844,78.5046094444384,74.798871608112,62.2288135777734,390.911844432703,225.251934202383,279.024367550018,63.0634149794426,56.8416381078019,43.6549577857284,341.44531948522,128.52889495966,153.80072029627,75.8406477859871,65.2695200892684,62.6879350070044,63.4656765977697,50.4594359947461,69.1120022797445,96.9043328720245,64.051170058107,81.833540886556,5.27988733383968,3.27683166757279,0,0.853460445133014,2.80277190925209,2.87376219977242,2.64417949113945,0,1.1384259382189,5.28513470433845,1.91136614062614,0,50.4457706683382,1.31692042387539,0.196709770113833,0,0.822405995998037,0.167186495390678,0,0,0,0.891283655081389,0.883817722424512,0,0.270803863765016,0.512365278902701,1.8208308658383,0,0,0,0,0,0,0.113309342697566,0,0.68725489096526,0,0.95569624297229,0,0,2.25862678616659,0.383959833463255,3.74792179657038,1.89421801635213,1.64225599384209,0.201606743224732,0.267440195783507,0.144824403882799,58.5136479153508,20.1210257911091,4.09160197899297,23.4935449049968,11.0294340339896,24.0445221474967,9.54343136461319,10.2193322763554,12.3840610484929,8.86917589850256,11.857696068572,26.3267941750402,2.5500670180478,7.41568885568859,16.8764644700435,17.7612332045253,16.6197450648581,4.29283123749616,2.85997455390064,1.48583000531826,3.7764857399674,8.60234595106124,6.59566953054429,3.95715559346807,7.1314904155684,9.35401342596229,5.22487416342026,14.4713385134824,21.3459757612026,20.7526779914096,6.8480983908555,3.80136052859256,6.10155143870424,4.77962004449629,10.5318453224629,5.62588288189703,10.1038217681776,6.19363142658272,12.2653309972707,5.69559395740877,7.87767498900751,5.27121669744253,7.75560528296651,4.79703457356788,25.3455695364612,4.17880688493113,11.1223711883104,55.9331410460187,15.2507404345294,10.0921968025615,4.2699598291882,14.3067178081953,19.917506265585,13.0669351907597,17.0000379237997,33.14727665424,67.9887590886399,2.81185718200556,23.7241658391044,7.98660550162229,14.7954193746283,9.0424563955699,8.7411389958791,10.3933596959664,15.9240253578817,14.1259464908533,24.3848843574806,43.956105719436,39.8099756138477,7.28129089550421,15.090980978141,7.57512512793298,7.00663711282999,16.3467828135668,21.9488810440419,9.19463387397059,78.5745048081501,7.0327953559213,19.553470290086,20.2879519377639,36.0284231971255,30.609291800609,24.42344942951,15.4584324027377,17.3088676388379,23.2911338492947,15.5899208257918,20.9520032622615,31.2049156397395,59.1624567956852,37.9860263992777,13.5007811625038,4.23901480776219,13.9147814277574,10.6370987030426,12.3325976017272,0.731842236777572,2.12047629314376,3.02104251460748,3.73179798055334,0.756962552626885,4.01475094983413,14.0804579096834,16.0810234548221,8.28809528114883,42.2574814509101,36.8158535651489,12.1856004041039,11.9695129955452,10.8454963447567,12.1323370005633,9.80457498415828,12.8126134319992,14.6966125894579,13.9317240238996,9.23393176671337,16.9775754563669,1.40241773803446,4.9388881359768,5.88034845542168,100.136477509246,55.0383241339471,137.063258350086,0.441463099414651,38.6183697025377,12.5244501517924,6.91426798074341,3.37205259772859,6.8359701239909,4.16648003213383,1.62904152655162,8.31947828223663,15.8764476227801,11.7089709024828,18.6679823834956,4.18662698507114,4.62985512576611,4.94660795809955,17.3844967551041,12.8772924314231,14.280586353069,12.8702345826581,18.2816329615136,13.1227367581488,11.7587489739202,6.80520466763455,7.7915914751478,11.6253575405585,5.75074018747817,28.0818045600688,25.6220942978488,13.4763275101502,25.3651118013852,9.08945520669936,40.0671712983587,36.6708888535947,14.0660936652056,15.3965201420435,43.3932019208025,70.5806185933206,78.0306161081479,11.1009773501907,27.9014444053299,11.734125731352,25.59579972004,21.4593867511129,16.060752298564,34.5719551560332,50.9636440865694,3.60090323966999,2.83698264046557,4.52917704327369,46.3248699452398,33.6425395342695,12.3486050517115,8.79487697593085,28.0759639506611,8.71147060226772,24.7180289188861,23.5314033822079,19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| |||
|short_description=p1@SMPDL3A | |||
}} |
Revision as of 13:40, 22 January 2014
Short description: | p1@SMPDL3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMPDL3A_5end |
Coexpression cluster: | C2841_sacrococcigeal_CD14_Smooth_colon_Prostate_anaplastic_tridermal |
Association with transcript: | 0bp_to_ENST00000487215_5end |
EntrezGene: | SMPDL3A |
HGNC: | 17389 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.47e-24 | 48 |
phagocyte | 1.47e-24 | 48 |
classical monocyte | 3.86e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.86e-24 | 42 |
monopoietic cell | 6.22e-22 | 59 |
monocyte | 6.22e-22 | 59 |
monoblast | 6.22e-22 | 59 |
promonocyte | 6.22e-22 | 59 |
macrophage dendritic cell progenitor | 9.50e-22 | 61 |
myeloid leukocyte | 1.56e-20 | 72 |
granulocyte monocyte progenitor cell | 2.79e-20 | 67 |
myeloid lineage restricted progenitor cell | 2.40e-19 | 66 |
Ontology term | p-value | n |
---|---|---|
embryonic structure | 1.14e-19 | 564 |
germ layer | 1.45e-19 | 560 |
germ layer / neural crest | 1.45e-19 | 560 |
embryonic tissue | 1.45e-19 | 560 |
presumptive structure | 1.45e-19 | 560 |
germ layer / neural crest derived structure | 1.45e-19 | 560 |
epiblast (generic) | 1.45e-19 | 560 |
developing anatomical structure | 1.30e-17 | 581 |
bone marrow | 8.62e-17 | 76 |
embryo | 6.85e-16 | 592 |
bone element | 2.95e-15 | 82 |
skeletal element | 9.88e-15 | 90 |
hematopoietic system | 3.56e-14 | 98 |
blood island | 3.56e-14 | 98 |
skeletal system | 4.63e-14 | 100 |
immune system | 1.42e-13 | 93 |
musculoskeletal system | 1.74e-13 | 167 |
hemolymphoid system | 4.30e-13 | 108 |
adult organism | 8.91e-13 | 114 |
mesoderm | 1.23e-10 | 315 |
mesoderm-derived structure | 1.23e-10 | 315 |
presumptive mesoderm | 1.23e-10 | 315 |
organ system subdivision | 9.63e-07 | 223 |