FFCP PHASE1:Hg19::chr6:31239852..31239876,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4933 | |||
|TSSclassifier=strong | |||
|UniProt=P10321,A2AEA2,A2AEA4 | |||
|association_with_transcript=0bp_to_ENST00000376228,ENST00000383329,ENST00000396254,ENST00000484378,uc003nsy.2,uc003nsz.2,uc003nta.2,uc010jsl.2,uc011dnl.1_5end | |||
|coexpression_cluster_id=C4591 | |||
|description=CAGE_peak_1_at_HLA-C_5end | |||
|id=chr6:31239852..31239876,- | |||
|ontology_enrichment_celltype=CL:0000738!1.95e-26!140;CL:0000766!2.75e-23!76;CL:0002057!1.28e-22!42;CL:0002087!1.68e-21!119;CL:0002031!4.97e-21!124;CL:0000557!1.63e-19!71;CL:0002009!1.70e-19!65;CL:0000860!3.07e-19!45;CL:0002194!5.65e-19!63;CL:0000576!5.65e-19!63;CL:0000040!5.65e-19!63;CL:0000559!5.65e-19!63;CL:0000839!2.90e-18!70;CL:0002032!3.03e-14!165;CL:0000837!3.03e-14!165;CL:0000037!3.45e-14!172;CL:0000566!3.45e-14!172;CL:0000988!7.38e-14!182;CL:0000763!1.46e-10!112;CL:0000049!1.46e-10!112;CL:0000134!1.23e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.32e-16;33!CL:0002057;1.32e-16;33!CL:0000473;1.50e-14;39!CL:0000234;1.50e-14;39!CL:0000576;5.36e-13;48!CL:0000766;2.99e-12;69!CL:0002087;1.65e-07;104!CL:0000738;4.73e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.45e-28,136;CL:0000766,2.76e-26,72;CL:0002087,1.44e-23,115;CL:0000473,2.28e-23,48;CL:0000234,2.28e-23,48;CL:0002031,5.20e-23,120;CL:0000860,1.28e-22,42;CL:0002057,1.28e-22,42;CL:0002009,1.86e-22,61;CL:0000557,2.73e-22,67;CL:0002194,6.04e-22,59;CL:0000576,6.04e-22,59;CL:0000040,6.04e-22,59;CL:0000559,6.04e-22,59;CL:0000839,6.14e-21,66;CL:0002032,1.59e-15,161;CL:0000837,1.59e-15,161;CL:0000037,1.96e-15,168;CL:0000988,2.89e-15,177;CL:0000763,6.84e-12,108;CL:0000049,6.84e-12,108;CL:0000134,2.61e-08,354;CL:0002320,2.63e-07,361;CL:0000048,3.13e-07,427;CL:0000219,5.73e-07,386;CL:0000034,8.06e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.25e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.16e-22!112;UBERON:0002390!3.25e-20!102;UBERON:0003061!3.25e-20!102;UBERON:0002371!1.08e-15!80;UBERON:0002405!2.63e-15!115;UBERON:0001474!1.14e-14!86;UBERON:0003081!1.48e-13!216;UBERON:0004765!1.58e-10!101;UBERON:0001434!1.58e-10!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.66e-24,108;UBERON:0002390,2.05e-22,98;UBERON:0003061,2.05e-22,98;UBERON:0002405,7.07e-21,93;UBERON:0002371,7.09e-18,76;UBERON:0001474,1.20e-16,82;UBERON:0003081,2.11e-14,203;UBERON:0004765,9.10e-13,90;UBERON:0001434,1.62e-10,100;UBERON:0000926,2.67e-08,315;UBERON:0004120,2.67e-08,315;UBERON:0006603,2.67e-08,315;UBERON:0002384,8.93e-07,371 | |||
|phase1_expression=115.002414078262,31.0445759641926,29.7413792642499,206.150994607449,17.8784437770915,22.6808016266096,253.299878168311,106.760658609134,55.1101675501659,33.4198153642052,1339.08044133909,110.531334297867,340.523168892934,8.78741106016331,7.29074226601415,177.493838663269,185.027220103361,211.059616121951,191.757589924669,194.900634935555,205.632696774207,243.240863866996,201.510134940264,147.961253503788,7.78364365487777,390.778156995023,367.728540146307,341.132526213486,3767.24967938195,1148.80138850496,1798.34408843954,7.35536979583142,15.0602959389125,12.201882335504,80.7982902052546,34.5471234944434,31.7088474481635,1584.42686840117,414.124284025843,320.742066918029,211.152292208249,677.585549311705,180.560472911565,394.756218286518,917.10491533274,463.820724991105,499.025142236505,1041.89942824731,586.893572846221,604.441716268838,1306.93192471147,860.322352334673,615.715785795601,1026.32064689828,537.643151779537,528.960974114719,913.143978093552,627.427968570676,609.719113602838,1321.90666252643,677.697353346984,522.484459495758,1258.21675227725,615.46853976921,872.078762078895,1430.37815144636,783.510389236433,589.178120027063,1148.30538636128,769.717265634933,724.663204652142,1479.73954139803,959.197496333321,988.674739939888,1656.18749672769,519.953440860772,1173.60953821858,1587.6701111204,338.327359997354,1124.37527405923,1631.11675303254,478.94541117087,65.1186104506894,69.9057422415528,49.8125182163591,609.797488047539,643.836747153908,55.1762342356304,76.0201603702591,59.1513327811926,175.88680745482,234.307638559005,174.316592025104,383.296852879175,649.6294244956,395.602895332166,171.727629309376,312.050545622837,1989.19450282025,602.540129388004,1048.49193176026,2116.31169163426,387.705189531744,877.134527056972,1236.75559957937,2159.06933661197,460.908176128057,1424.75974930868,424.643769783002,1191.35261885363,314.762670258081,564.246607926147,934.353634484143,1277.23991330029,297.926242844184,634.305700420976,1255.43033703989,2792.66024943733,379.782557721274,87.6054889391266,78.1300144627702,80.7884237781118,974.22102043319,1013.65396034299,73.7091286658841,98.025782346223,112.494535578183,1649.14315957831,434.590318148199,252.863409179367,304.758582892452,26.1573335284418,204.707961511492,99.3957669057557,196.023123058633,195.542800597112,349.130530755433,963.537043199219,100.301441011076,7.9822583086523,96.3547599053593,407.344924797886,47.3583874780305,415.649360361345,474.163742129492,485.821967064956,137.212615255469,116.621915285312,81.2232773307782,66.4908927379921,419.786204358481,24.0865686629715,19.4398680900253,16.9592382577203,266.8016414295,200.285934532369,16.0926124233344,191.745235303642,311.295479850871,96.399536476225,767.792678410034,34.2122447573331,436.382958896127,122.431805755174,39.6969554462062,135.199788622097,122.817566826515,118.692500429422,101.188980727483,261.997322040804,181.736129978964,5207.96209707322,418.802685280191,496.711125390347,529.77210050721,211.852846014842,69.3824107461267,674.63973200121,185.136895507542,268.003892868023,206.025561758331,95.2136736890237,16.4941848761876,8.08264032418128,7.5192475432191,19.3737507385512,34.5705554687999,112.708608712056,69.9238572099918,59.3290694406227,128.675313955101,4.3450764498193,54.5511822520603,51.8263476731297,138.824836453327,95.6879331858673,180.923442838765,169.884408591334,131.546006376192,211.157435969622,522.435389100405,125.242068781825,3.37820003654303,92.2623504562329,19.7539929396377,32.4877063546961,128.303302306234,143.264847331107,229.977512953121,404.05057964473,302.850686757014,458.239103720882,265.772472905934,23.7029296841979,82.2636504985627,237.468299463462,201.889474694004,175.946340648148,326.408940585593,27.479829659198,29.1107865863624,10.7804745103575,27.2992553619885,388.454314858227,29.4565810238101,42.7338847129616,102.213965736601,108.806939791939,105.504100125523,131.234895649459,116.57223310454,87.5945661781992,1857.05594875492,796.975522420985,33.1523811245953,182.9609636446,215.841965019206,26.500723208925,31.0195829743707,26.99323534695,28.56613893769,33.1176755020457,30.3706392462204,29.528056487076,28.8445553734259,35.7814855960143,31.7406845488599,35.0604434508615,219.780522050968,451.316743953614,39.2940607947676,57.9868057839799,57.3066209480962,3.5317047953172,38.8643465796239,148.063020287628,18.4380479486491,22.4803506515239,17.1904542823889,6.85154494173119,245.333653898674,13.5191522086345,115.465073620219,122.538438058656,193.489528100634,348.067505551949,465.300440139494,55.9347207569719,5.53143078571493,7.72637545885385,178.261112407276,708.564914841612,103.893182439821,11.2480600784132,287.081457091851,46.9275571872299,7.70203295244495,90.6777888163561,21.4694300332518,408.417824215737,467.80132991227,36.2824202196351,64.2774992239648,177.749346264343,67.0537763725305,22.9193055334967,343.447120325438,41.0573870454493,107.249074889566,182.608579169102,220.086353125545,26.2386737368144,4.3596006883328,17.1611588821023,376.56850800240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| |||
|short_description=p1@HLA-C | |||
}} |
Revision as of 10:57, 22 January 2014
Short description: | p1@HLA-C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-C_5end |
Coexpression cluster: | C4591_Neutrophils_Basophils_Eosinophils_migratory_CD14_CD4_CD8 |
Association with transcript: | 0bp_to_ENST00000376228, ENST00000383329, ENST00000396254, ENST00000484378, uc003nsy.2, uc003nsz.2, uc003nta.2, uc010jsl.2, uc011dnl.1_5end |
EntrezGene: | HLA-C |
HGNC: | 4933 |
UniProt: | P10321A2AEA2A2AEA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.45e-28 | 136 |
myeloid leukocyte | 2.76e-26 | 72 |
nongranular leukocyte | 1.44e-23 | 115 |
defensive cell | 2.28e-23 | 48 |
phagocyte | 2.28e-23 | 48 |
hematopoietic lineage restricted progenitor cell | 5.20e-23 | 120 |
classical monocyte | 1.28e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.28e-22 | 42 |
macrophage dendritic cell progenitor | 1.86e-22 | 61 |
granulocyte monocyte progenitor cell | 2.73e-22 | 67 |
monopoietic cell | 6.04e-22 | 59 |
monocyte | 6.04e-22 | 59 |
monoblast | 6.04e-22 | 59 |
promonocyte | 6.04e-22 | 59 |
myeloid lineage restricted progenitor cell | 6.14e-21 | 66 |
hematopoietic oligopotent progenitor cell | 1.59e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-15 | 161 |
hematopoietic stem cell | 1.96e-15 | 168 |
hematopoietic cell | 2.89e-15 | 177 |
myeloid cell | 6.84e-12 | 108 |
common myeloid progenitor | 6.84e-12 | 108 |
mesenchymal cell | 2.61e-08 | 354 |
connective tissue cell | 2.63e-07 | 361 |
multi fate stem cell | 3.13e-07 | 427 |
motile cell | 5.73e-07 | 386 |
stem cell | 8.06e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.66e-24 | 108 |
hematopoietic system | 2.05e-22 | 98 |
blood island | 2.05e-22 | 98 |
immune system | 7.07e-21 | 93 |
bone marrow | 7.09e-18 | 76 |
bone element | 1.20e-16 | 82 |
lateral plate mesoderm | 2.11e-14 | 203 |
skeletal element | 9.10e-13 | 90 |
skeletal system | 1.62e-10 | 100 |
mesoderm | 2.67e-08 | 315 |
mesoderm-derived structure | 2.67e-08 | 315 |
presumptive mesoderm | 2.67e-08 | 315 |
connective tissue | 8.93e-07 | 371 |