FFCP PHASE1:Hg19::chr6:3228944..3228955,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-50bp_to_uc003mvi.1_5end | |||
|coexpression_cluster_id=C2494 | |||
|description=CAGE_peak_2_at_uc003mvi.1_5end | |||
|id=chr6:3228944..3228955,+ | |||
|ontology_enrichment_celltype=CL:0000047!8.68e-12!8;CL:0002319!1.04e-11!25;CL:0000540!2.28e-11!6;CL:0000031!2.28e-11!6;CL:0000404!2.28e-11!6;CL:0000133!2.69e-11!59;CL:0002322!8.70e-09!5;CL:0000221!1.16e-08!71;CL:0002605!1.94e-08!3;CL:0000242!5.96e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;1.56e-21;2!CL:0000242;1.56e-21;2!CL:0000333;8.96e-20;5!CL:0000167;1.19e-11;1!CL:0000164;1.19e-11;1!CL:0000502;1.19e-11;1!CL:0000172;1.19e-11;1!CL:0002553;1.19e-11;1!CL:0000173;1.19e-11;1!CL:0000312;3.44e-09;5!CL:0000540;8.41e-08;6!CL:0000240;8.41e-08;6!CL:0000311;8.41e-08;6!CL:0000079;8.41e-08;6!CL:0000237;8.41e-08;6!CL:0000404;8.41e-08;6!CL:0002321;5.99e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,9.19e-22,2;CL:0002553,1.19e-11,1;CL:0000167,1.47e-11,1;CL:0000164,1.47e-11,1;CL:0000502,1.47e-11,1;CL:0000172,1.47e-11,1;CL:0000173,1.47e-11,1;CL:0002351,1.47e-11,1;CL:0000312,2.80e-09,5;CL:0000540,7.08e-08,6;CL:0000240,7.08e-08,6;CL:0000311,7.08e-08,6;CL:0000079,7.08e-08,6;CL:0000237,7.08e-08,6;CL:0000031,7.08e-08,6;CL:0000036,7.08e-08,6;CL:0000404,7.08e-08,6;CL:0000357,7.08e-08,6;CL:0000114,7.08e-08,6;CL:0000133,8.89e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002351;1.19e-11;1!CL:0000357;8.41e-08;6!CL:0000114;8.41e-08;6!CL:0000031;8.41e-08;6 | |||
|ontology_enrichment_disease=DOID:169!3.13e-08!6;DOID:5409!9.37e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:169;2.33e-28;6!DOID:171;3.78e-17;10!DOID:4430;1.19e-11;1!DOID:3095;6.54e-08;22!DOID:2994;6.54e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.51e-28,6;DOID:171,3.94e-17,10;DOID:4430,1.47e-11,1;DOID:3095,6.67e-08,22;DOID:2994,6.67e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.16e-35!94;UBERON:0001016!1.16e-35!94;UBERON:0001017!1.53e-33!82;UBERON:0005743!1.97e-33!86;UBERON:0001049!1.56e-30!57;UBERON:0005068!1.56e-30!57;UBERON:0006241!1.56e-30!57;UBERON:0007135!1.56e-30!57;UBERON:0002020!7.47e-28!34;UBERON:0003528!7.47e-28!34;UBERON:0002791!6.24e-26!33;UBERON:0003075!1.02e-25!86;UBERON:0007284!1.02e-25!86;UBERON:0000956!2.14e-25!25;UBERON:0000203!2.14e-25!25;UBERON:0001893!4.95e-25!34;UBERON:0002616!1.06e-24!59;UBERON:0002346!3.53e-24!90;UBERON:0004121!1.80e-23!169;UBERON:0000955!1.87e-23!69;UBERON:0006238!1.87e-23!69;UBERON:0000924!1.19e-22!173;UBERON:0006601!1.19e-22!173;UBERON:0001869!1.32e-21!32;UBERON:0002780!6.02e-20!41;UBERON:0001890!6.02e-20!41;UBERON:0006240!6.02e-20!41;UBERON:0003056!1.16e-19!61;UBERON:0002619!1.43e-19!22;UBERON:0003080!2.34e-19!42;UBERON:0000033!1.04e-18!123;UBERON:0000153!1.47e-18!129;UBERON:0007811!1.47e-18!129;UBERON:0001950!8.26e-16!20;UBERON:0002298!2.36e-15!8;UBERON:0003076!9.05e-13!15;UBERON:0003057!9.05e-13!15;UBERON:0004733!8.40e-10!12;UBERON:0002028!8.40e-10!12;UBERON:0007277!8.40e-10!12;UBERON:0000064!2.29e-09!219;UBERON:0001896!3.93e-09!3;UBERON:0005290!3.93e-09!3;UBERON:0010096!3.93e-09!3;UBERON:0004732!5.77e-09!13;UBERON:0000349!6.78e-09!5;UBERON:0006331!3.33e-08!3;UBERON:0000025!3.44e-08!194;UBERON:0000988!3.69e-08!3;UBERON:0007023!1.59e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;8.96e-20;5!UBERON:0002410;8.96e-20;5!UBERON:0000010;2.99e-11;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.41e-20,5;UBERON:0002410,8.41e-20,5;UBERON:0001016,2.90e-12,89;UBERON:0000010,2.89e-11,8;UBERON:0004121,2.92e-08,171;UBERON:0000924,2.92e-08,171;UBERON:0006601,2.92e-08,171;UBERON:0001017,3.65e-07,81;UBERON:0011216,5.82e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665188192387692,0.351339142772504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609868530647977,0.132529768321485,0.348581828608555,0.518305275076852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,1.67516265334349,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.281338832821026,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,5.98841394003583,0,0,0,0,0,0,3.10269035917318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,2.44858209304392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572682980829578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0.321506296930038,0.137539436597234,0.415440338029185,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0,0,1.14681839138014,0.443716206147409,0.683060432355218,0,0,0,0,0,1.87333962322753,1.88397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81367616868034,3.12691953050377,0,2.07498312564826,0,0,0,0,0,0,1.60114149657094,0,0,0,0,0.159633859057151,0.205116364240755,2.01657356977374,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781078098613847,0,0.0634158101939068,3.82882366312754,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.471346769748006,0,0,0,0,0.0714765441766563,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0.467878926924211,3.780064728066,0,1.58124514854544,0.219881033490858,0.452888530700021,0,0,0,0,1.41405928260976,1.17785080268967,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,3.05445483238264,0,0,0,0,0.252332849670158,0.109265571963696,0.126698501011437,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@uc003mvi.1 | |||
}} |
Revision as of 09:43, 22 January 2014
Short description: | p2@uc003mvi.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc003mvi.1_5end |
Coexpression cluster: | C2494_brain_neuroblastoma_duodenum_occipital_temporal_parietal_small |
Association with transcript: | -50bp_to_uc003mvi.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 9.19e-22 | 2 |
lung fibroblast | 1.19e-11 | 1 |
peptide hormone secreting cell | 1.47e-11 | 1 |
enteroendocrine cell | 1.47e-11 | 1 |
type D enteroendocrine cell | 1.47e-11 | 1 |
somatostatin secreting cell | 1.47e-11 | 1 |
pancreatic D cell | 1.47e-11 | 1 |
progenitor cell of endocrine pancreas | 1.47e-11 | 1 |
keratinocyte | 2.80e-09 | 5 |
neuron | 7.08e-08 | 6 |
stratified squamous epithelial cell | 7.08e-08 | 6 |
keratin accumulating cell | 7.08e-08 | 6 |
stratified epithelial cell | 7.08e-08 | 6 |
keratinizing barrier epithelial cell | 7.08e-08 | 6 |
neuroblast | 7.08e-08 | 6 |
epithelial fate stem cell | 7.08e-08 | 6 |
electrically signaling cell | 7.08e-08 | 6 |
stratified epithelial stem cell | 7.08e-08 | 6 |
surface ectodermal cell | 7.08e-08 | 6 |
neurectodermal cell | 8.89e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.41e-20 | 5 |
autonomic nervous system | 8.41e-20 | 5 |
nervous system | 2.90e-12 | 89 |
peripheral nervous system | 2.89e-11 | 8 |
ectoderm-derived structure | 2.92e-08 | 171 |
ectoderm | 2.92e-08 | 171 |
presumptive ectoderm | 2.92e-08 | 171 |
central nervous system | 3.65e-07 | 81 |
organ system subdivision | 5.82e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.51e-28 | 6 |
neuroectodermal tumor | 3.94e-17 | 10 |
somatostatinoma | 1.47e-11 | 1 |
germ cell and embryonal cancer | 6.67e-08 | 22 |
germ cell cancer | 6.67e-08 | 22 |