FFCP PHASE1:Hg19::chr5:138647473..138647476,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=9782 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=6912 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=22bp_to_uc003leb.2_5end | |||
|description=CAGE_peak_6_at_MATR3_5end | |||
|id=chr5:138647473..138647476,+ | |||
|ontology_enrichment_celltype=CL:0002087!6.74e-15!119;CL:0002031!1.05e-13!124;CL:0000037!1.85e-13!172;CL:0000566!1.85e-13!172;CL:0000738!8.29e-13!140;CL:0002032!1.87e-12!165;CL:0000837!1.87e-12!165;CL:0000988!4.54e-12!182;CL:0000860!9.20e-11!45;CL:0002057!5.12e-10!42;CL:0000557!2.26e-09!71;CL:0002009!4.94e-09!65;CL:0002194!5.33e-09!63;CL:0000576!5.33e-09!63;CL:0000040!5.33e-09!63;CL:0000559!5.33e-09!63;CL:0000839!8.73e-09!70;CL:0000766!6.91e-08!76;CL:0000763!2.58e-07!112;CL:0000049!2.58e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.60e-07;33!CL:0002057;5.60e-07;33!CL:0000576;7.82e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0002087,9.20e-14,115;CL:0002031,1.00e-12,120;CL:0000037,3.67e-12,168;CL:0000738,6.77e-12,136;CL:0002032,3.07e-11,161;CL:0000837,3.07e-11,161;CL:0000988,6.07e-11,177;CL:0000860,1.37e-10,42;CL:0002057,1.37e-10,42;CL:0000473,6.22e-09,48;CL:0000234,6.22e-09,48;CL:0000557,1.18e-08,67;CL:0002009,2.76e-08,61;CL:0002194,3.05e-08,59;CL:0000576,3.05e-08,59;CL:0000040,3.05e-08,59;CL:0000559,3.05e-08,59;CL:0000839,3.39e-08,66;CL:0000766,1.57e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;3.64e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.74e-11!102;UBERON:0003061!2.74e-11!102;UBERON:0002193!1.65e-10!112;UBERON:0007023!9.18e-09!115;UBERON:0001049!5.53e-08!57;UBERON:0005068!5.53e-08!57;UBERON:0006241!5.53e-08!57;UBERON:0007135!5.53e-08!57;UBERON:0002371!8.01e-08!80;UBERON:0002780!1.14e-07!41;UBERON:0001890!1.14e-07!41;UBERON:0006240!1.14e-07!41;UBERON:0003080!5.06e-07!42;UBERON:0001474!7.44e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.46e-10,98;UBERON:0003061,2.46e-10,98;UBERON:0002193,9.41e-10,108;UBERON:0007023,8.24e-09,114;UBERON:0001049,9.14e-09,56;UBERON:0005068,9.14e-09,56;UBERON:0006241,9.14e-09,56;UBERON:0007135,9.14e-09,56;UBERON:0000073,5.08e-08,53;UBERON:0002616,5.08e-08,53;UBERON:0002780,1.31e-07,41;UBERON:0001890,1.31e-07,41;UBERON:0003080,1.31e-07,41;UBERON:0006240,1.31e-07,41;UBERON:0002405,4.83e-07,93;UBERON:0002371,5.92e-07,76;UBERON:0001016,6.26e-07,89;UBERON:0001017,6.48e-07,81 | |||
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| |||
|short_description=p6@MATR3 | |||
}} |
Revision as of 07:43, 22 January 2014
Short description: | p6@MATR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_MATR3_5end |
Coexpression cluster: | NA |
Association with transcript: | 22bp_to_uc003leb.2_5end |
EntrezGene: | MATR3 |
HGNC: | 6912 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nongranular leukocyte | 9.20e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 1.00e-12 | 120 |
hematopoietic stem cell | 3.67e-12 | 168 |
leukocyte | 6.77e-12 | 136 |
hematopoietic oligopotent progenitor cell | 3.07e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.07e-11 | 161 |
hematopoietic cell | 6.07e-11 | 177 |
classical monocyte | 1.37e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.37e-10 | 42 |
defensive cell | 6.22e-09 | 48 |
phagocyte | 6.22e-09 | 48 |
granulocyte monocyte progenitor cell | 1.18e-08 | 67 |
macrophage dendritic cell progenitor | 2.76e-08 | 61 |
monopoietic cell | 3.05e-08 | 59 |
monocyte | 3.05e-08 | 59 |
monoblast | 3.05e-08 | 59 |
promonocyte | 3.05e-08 | 59 |
myeloid lineage restricted progenitor cell | 3.39e-08 | 66 |
myeloid leukocyte | 1.57e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.46e-10 | 98 |
blood island | 2.46e-10 | 98 |
hemolymphoid system | 9.41e-10 | 108 |
adult organism | 8.24e-09 | 114 |
neural tube | 9.14e-09 | 56 |
neural rod | 9.14e-09 | 56 |
future spinal cord | 9.14e-09 | 56 |
neural keel | 9.14e-09 | 56 |
regional part of nervous system | 5.08e-08 | 53 |
regional part of brain | 5.08e-08 | 53 |
regional part of forebrain | 1.31e-07 | 41 |
forebrain | 1.31e-07 | 41 |
anterior neural tube | 1.31e-07 | 41 |
future forebrain | 1.31e-07 | 41 |
immune system | 4.83e-07 | 93 |
bone marrow | 5.92e-07 | 76 |
nervous system | 6.26e-07 | 89 |
central nervous system | 6.48e-07 | 81 |