FFCP PHASE1:Hg19::chr5:95997918..95998007,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=831 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1515 | |||
|TSSclassifier=strong | |||
|UniProt=P20810,G5E9D3 | |||
|association_with_transcript=0bp_to_ENST00000325674,ENST00000359176,ENST00000395812,ENST00000395813,uc003klu.2,uc003klv.2,uc003klw.2,uc003klx.2,uc003kly.2_5end | |||
|description=CAGE_peak_2_at_CAST_5end | |||
|id=chr5:95997918..95998007,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.53e-30!140;CL:0002087!6.46e-26!119;CL:0002031!1.08e-25!124;CL:0000766!1.36e-22!76;CL:0000557!5.38e-20!71;CL:0000839!1.17e-18!70;CL:0002194!5.74e-18!63;CL:0000576!5.74e-18!63;CL:0000040!5.74e-18!63;CL:0000559!5.74e-18!63;CL:0002009!8.89e-18!65;CL:0000860!4.77e-16!45;CL:0002057!2.03e-15!42;CL:0002320!5.32e-12!365;CL:0000134!5.65e-12!358;CL:0002032!1.20e-11!165;CL:0000837!1.20e-11!165;CL:0000037!2.20e-11!172;CL:0000566!2.20e-11!172;CL:0000048!1.61e-10!430;CL:0000723!1.37e-09!436;CL:0000988!1.62e-09!182;CL:0000219!1.47e-08!390;CL:0002371!2.95e-08!591;CL:0000034!3.76e-08!444;CL:0000838!7.54e-08!52;CL:0000542!1.28e-07!53;CL:0000051!1.28e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.66e-14;33!CL:0002057;4.66e-14;33!CL:0000473;1.21e-13;39!CL:0000234;1.21e-13;39!CL:0000576;1.12e-10;48!CL:0000766;3.46e-10;69!CL:0002087;4.38e-08;104!CL:0000738;2.18e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.73e-30,136;CL:0002087,2.27e-25,115;CL:0002031,3.87e-25,120;CL:0000766,3.56e-22,72;CL:0000557,1.43e-19,67;CL:0000839,3.20e-18,66;CL:0002194,1.47e-17,59;CL:0000576,1.47e-17,59;CL:0000040,1.47e-17,59;CL:0000559,1.47e-17,59;CL:0000473,1.98e-17,48;CL:0000234,1.98e-17,48;CL:0002009,2.36e-17,61;CL:0000860,2.03e-15,42;CL:0002057,2.03e-15,42;CL:0002320,1.41e-11,361;CL:0000134,1.49e-11,354;CL:0002032,3.33e-11,161;CL:0000837,3.33e-11,161;CL:0000037,5.95e-11,168;CL:0000048,3.61e-10,427;CL:0000723,2.88e-09,433;CL:0000988,3.29e-09,177;CL:0000219,3.33e-08,386;CL:0000838,7.35e-08,52;CL:0000034,7.40e-08,441;CL:0000542,1.25e-07,53;CL:0000051,1.25e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;1.52e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.04e-18!102;UBERON:0003061!1.04e-18!102;UBERON:0002371!4.48e-18!80;UBERON:0002193!5.84e-18!112;UBERON:0004765!3.60e-16!101;UBERON:0001434!3.60e-16!101;UBERON:0001474!4.83e-16!86;UBERON:0002204!6.49e-14!167;UBERON:0003081!4.50e-13!216;UBERON:0002405!2.24e-12!115;UBERON:0002384!1.30e-11!375;UBERON:0000926!9.74e-11!448;UBERON:0004120!9.74e-11!448;UBERON:0006603!9.74e-11!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.62e-18,98;UBERON:0003061,3.62e-18,98;UBERON:0002371,1.38e-17,76;UBERON:0002193,2.09e-17,108;UBERON:0002405,5.80e-16,93;UBERON:0001434,9.64e-16,100;UBERON:0001474,1.64e-15,82;UBERON:0004765,9.41e-15,90;UBERON:0002204,1.35e-13,167;UBERON:0003081,5.55e-12,203;UBERON:0002384,3.40e-11,371;UBERON:0000926,1.50e-09,315;UBERON:0004120,1.50e-09,315;UBERON:0006603,1.50e-09,315 | |||
|phase1_expression=12.8991649282095,19.2690471501885,7.47058341708647,19.0139266870948,8.04529969969118,4.36169262050184,10.1319951267324,22.7419154433659,29.2527903583819,9.58362352355885,4.18680700783456,11.5773927228991,7.91300934685361,35.5209432995334,25.8489953067774,19.4974292471015,24.7104756489831,23.3699228923959,19.5173119516203,10.8346531107573,14.6880497695862,12.5381888591235,12.0219114595044,31.7548666169091,15.94391522854,30.9474293279203,28.8994074863809,29.1229890860613,35.7961491932503,43.7565513830822,67.3450136424931,8.27479102031034,9.93979531968225,10.3531122846701,6.58471204932564,18.19766175839,4.9912074686924,43.2116418654864,64.3747676379155,47.5253806867715,33.1394901875088,46.3167942407141,54.3484447708134,64.5568180181267,39.676974087325,60.646015296954,51.599246193062,37.4162778099861,39.6424154745733,39.1261653558125,43.8034808164762,34.2899233338449,52.0565977912294,46.4748972180355,24.3767675869815,48.3782812624494,37.6610487079827,30.3376704000864,59.3802751199551,42.3626315740444,43.4749245543348,44.8597768253934,50.6637690358945,49.8682958123252,57.171220009831,43.6886623012178,53.5627134136194,54.5209603607133,49.0193943314989,40.1799362704466,50.853558221203,39.773984686657,39.2413360426697,27.6744425068644,18.0713654970287,28.3039171436307,36.6191337537574,31.5371474967163,60.111369424708,22.8010194992999,17.5046675935199,23.929004143167,43.9990611153307,61.7136630726209,39.1384071699964,38.8324502535522,57.2566261461498,58.6247488753573,60.1550834234225,54.3810640085158,55.2136580036165,68.1195139670289,58.48780390316,14.5388461436928,20.7388168303168,3.95076127162616,36.1945977009453,48.7333345808964,43.7931192868955,29.59200968415,26.7256258639544,19.4113600351241,15.5861382726329,28.5210769626044,37.4149502493043,33.0085502929595,24.1015438750864,22.8002549111702,21.1996736522602,15.9504767465566,13.8175008892924,19.1270036585135,19.2772532110679,16.0524496853828,11.4989076185474,33.3129467530845,29.5079780073479,20.6176467289578,35.1697371907109,34.4050647470024,35.809589962103,23.7613011112094,35.9874534595877,42.7475281255757,32.4819889036099,44.7509006363192,41.8775278429734,36.894034010126,58.5694028765881,36.0612765668169,7.31420598941885,14.75541891348,16.877858163346,23.4935449049968,16.5441510509844,23.8996756285359,10.3387173116643,10.705967146658,14.4638270261024,18.1818105919302,18.0061310670908,15.9139576729721,10.9288586487763,7.41568885568859,38.6211398449073,32.3881311376637,39.3555563135841,14.5479280826259,21.1638116988647,8.17206502925043,17.2923294409033,14.6239881168041,33.3254881543291,18.6551620834923,27.6869627898538,31.3634567811677,27.3783406163222,26.1000926761022,37.3554575821046,38.1581498551724,18.9329779041299,9.88353737434066,24.6502678123651,23.1627740617897,22.6839745406893,20.181738592202,30.5359946771591,39.0761837277128,13.7984973719295,8.54339093611316,21.9842092716489,30.3094960102945,15.511210565933,13.5189156164186,17.3940183093361,18.4880547030286,45.2839398381208,5.16305917347865,25.8907919004801,10.0921968025615,24.5522690178321,20.7200740670414,32.9883697523752,18.590072745617,21.74043311409,19.6764655938411,10.94734256512,35.1482147750695,31.8403278366927,20.5369855756002,26.0040704160134,34.2908736039793,30.755859429945,27.5283581136407,37.3602133396455,35.7447863377245,53.316103086695,29.7000714320513,41.5408441187976,9.10161361938026,7.18618141816238,40.2323312350218,57.1791635814876,66.2183236007197,43.8977620880838,29.7293161925049,36.9585624910228,21.8924113498841,30.4962380671065,30.5387066010551,21.4051220171157,21.0063767259082,33.4920720024926,31.6897864256124,25.4980093174278,30.8860688001517,26.7951764193296,31.0493542320261,26.2342211130553,33.6223798183129,31.2408441414621,26.2962976374141,27.2992553619885,10.8226077771446,29.4565810238101,43.3074939037396,4.51302712679503,7.55419679432466,4.53156377191122,5.07939169575315,6.30802127189071,4.01475094983413,15.6449532329816,36.6647334769945,22.1015874163969,28.7908115379827,29.597058748453,14.3151228048211,13.8239445864043,13.496617673475,15.4411561825352,16.3409583069305,14.710778384888,17.6629013689815,12.9506166982728,16.1593805917484,22.1446636387394,9.81692416624121,9.8777762719536,11.7606969108434,17.7457048750563,13.7595810334868,12.4065880403095,0,22.9988380075622,21.1028406667186,36.6565953264809,10.1161577931858,10.2539551859863,12.2216747609259,26.064664424826,43.6772609817423,11.5465073620219,24.8091066646664,12.7975476717046,16.7465079402846,14.3525508898749,15.4105863310025,2.37061319387782,1.71697232418975,49.7358352296543,35.1006397708856,43.1030370637312,10.3107217385455,12.9346238713122,18.5725377387526,19.7924335173295,15.6942326797539,26.4534048623996,44.8323546485309,45.5210403848379,138.909837412317,144.119953416961,139.119161635871,26.9866050741718,22.9193055334967,16.4104426094066,11.9750712215894,15.3212964127952,19.8226418176986,20.0078502841405,17.2681869891856,13.5147621338317,13.6409211626967,10.3417372606222,25.0359512096318,1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| |||
|short_description=p2@CAST | |||
}} |
Revision as of 06:36, 22 January 2014
Short description: | p2@CAST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CAST_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000325674, ENST00000359176, ENST00000395812, ENST00000395813, uc003klu.2, uc003klv.2, uc003klw.2, uc003klx.2, uc003kly.2_5end |
EntrezGene: | CAST |
HGNC: | 1515 |
UniProt: | P20810G5E9D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.73e-30 | 136 |
nongranular leukocyte | 2.27e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 3.87e-25 | 120 |
myeloid leukocyte | 3.56e-22 | 72 |
granulocyte monocyte progenitor cell | 1.43e-19 | 67 |
myeloid lineage restricted progenitor cell | 3.20e-18 | 66 |
monopoietic cell | 1.47e-17 | 59 |
monocyte | 1.47e-17 | 59 |
monoblast | 1.47e-17 | 59 |
promonocyte | 1.47e-17 | 59 |
defensive cell | 1.98e-17 | 48 |
phagocyte | 1.98e-17 | 48 |
macrophage dendritic cell progenitor | 2.36e-17 | 61 |
classical monocyte | 2.03e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.03e-15 | 42 |
connective tissue cell | 1.41e-11 | 361 |
mesenchymal cell | 1.49e-11 | 354 |
hematopoietic oligopotent progenitor cell | 3.33e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.33e-11 | 161 |
hematopoietic stem cell | 5.95e-11 | 168 |
multi fate stem cell | 3.61e-10 | 427 |
somatic stem cell | 2.88e-09 | 433 |
hematopoietic cell | 3.29e-09 | 177 |
motile cell | 3.33e-08 | 386 |
lymphoid lineage restricted progenitor cell | 7.35e-08 | 52 |
stem cell | 7.40e-08 | 441 |
lymphocyte | 1.25e-07 | 53 |
common lymphoid progenitor | 1.25e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.62e-18 | 98 |
blood island | 3.62e-18 | 98 |
bone marrow | 1.38e-17 | 76 |
hemolymphoid system | 2.09e-17 | 108 |
immune system | 5.80e-16 | 93 |
skeletal system | 9.64e-16 | 100 |
bone element | 1.64e-15 | 82 |
skeletal element | 9.41e-15 | 90 |
musculoskeletal system | 1.35e-13 | 167 |
lateral plate mesoderm | 5.55e-12 | 203 |
connective tissue | 3.40e-11 | 371 |
mesoderm | 1.50e-09 | 315 |
mesoderm-derived structure | 1.50e-09 | 315 |
presumptive mesoderm | 1.50e-09 | 315 |