FFCP PHASE1:Hg19::chr5:82808116..82808153,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=195bp_to_ENST00000515397_5end | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_12_at_VCAN_5end | |||
|id=chr5:82808116..82808153,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.32e-16!42;CL:0000860!2.23e-14!45;CL:0000055!1.35e-11!180;CL:0000034!1.79e-10!444;CL:0000048!2.70e-10!430;CL:0000723!1.34e-09!436;CL:0000057!2.38e-08!75;CL:0000393!8.15e-08!60;CL:0000211!8.15e-08!60;CL:0002334!2.03e-07!12;CL:0002494!2.06e-07!16;CL:0000680!5.72e-07!57;CL:0000056!5.72e-07!57;CL:0000355!5.72e-07!57;CL:0002194!6.11e-07!63;CL:0000576!6.11e-07!63;CL:0000040!6.11e-07!63;CL:0000559!6.11e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.60e-15;33!CL:0002057;6.60e-15;33!CL:0000473;6.23e-11;39!CL:0000234;6.23e-11;39!CL:0000576;2.59e-09;48!CL:0002494;1.70e-08;16!CL:0000569;1.68e-07;4!CL:0002334;7.20e-07;12!CL:1000306;8.17e-07;4!CL:0002547;8.17e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.42e-16,42;CL:0002057,1.42e-16,42;CL:0000473,1.52e-13,48;CL:0000234,1.52e-13,48;CL:0000048,6.37e-11,427;CL:0000034,1.23e-10,441;CL:0000723,2.01e-10,433;CL:0002194,2.12e-09,59;CL:0000576,2.12e-09,59;CL:0000040,2.12e-09,59;CL:0000559,2.12e-09,59;CL:0002009,7.08e-09,61;CL:0002494,1.34e-08,16;CL:0000839,1.01e-07,66;CL:0000557,1.64e-07,67;CL:0000569,1.78e-07,4;CL:0000011,1.78e-07,4;CL:0000134,3.13e-07,354;CL:0002334,3.76e-07,12;CL:0002320,4.42e-07,361;CL:0000057,7.50e-07,76;CL:1000306,9.82e-07,4;CL:0002547,9.82e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002057;6.09e-13;42!CL:0000011;1.68e-07;4 | |||
|ontology_enrichment_disease=DOID:2394!4.42e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;8.40e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.39e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!9.79e-10!167;UBERON:0000948!1.78e-09!24;UBERON:0005498!1.78e-09!24;UBERON:0004140!1.78e-09!24;UBERON:0009881!1.78e-09!24;UBERON:0004141!1.78e-09!24;UBERON:0003084!1.78e-09!24;UBERON:0007005!1.78e-09!24;UBERON:0004139!1.78e-09!24;UBERON:0004291!1.78e-09!24;UBERON:0000468!7.82e-08!659;UBERON:0007100!1.77e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;2.42e-09;22!UBERON:0007100;8.23e-08;25!UBERON:0004797;8.17e-07;4!UBERON:0000415;8.17e-07;4!UBERON:0007240;8.17e-07;4!UBERON:0005742;8.17e-07;4!UBERON:0005734;8.17e-07;4!UBERON:0004664;8.17e-07;4!UBERON:0004663;8.17e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000948,2.64e-11,24;UBERON:0005498,2.64e-11,24;UBERON:0004140,2.64e-11,24;UBERON:0009881,2.64e-11,24;UBERON:0004141,2.64e-11,24;UBERON:0003084,2.64e-11,24;UBERON:0007005,2.64e-11,24;UBERON:0004139,2.64e-11,24;UBERON:0004291,2.64e-11,24;UBERON:0000926,6.42e-10,315;UBERON:0004120,6.42e-10,315;UBERON:0006603,6.42e-10,315;UBERON:0007100,1.39e-09,27;UBERON:0003081,9.96e-09,203;UBERON:0004872,7.95e-08,83;UBERON:0002204,1.17e-07,167;UBERON:0002384,3.57e-07,371;UBERON:0000415,9.82e-07,4;UBERON:0007240,9.82e-07,4;UBERON:0005742,9.82e-07,4;UBERON:0005734,9.82e-07,4;UBERON:0004664,9.82e-07,4;UBERON:0004663,9.82e-07,4 | |||
|phase1_expression=1.2717486548939,0.642301571672949,0.422863212287913,2.00146596706261,3.12872766099101,3.48935409640147,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0.331397375727916,3.36162573225888,2.41077811209591,2.19093027116212,0.487932798790507,0,0,0.313454721478088,1.43117993565528,0.684372125364421,0.87879847716362,0,0,0,0.393364276848904,0.383829398097213,0.464448369948228,0,0.30120591877825,0,0,0,0,0.553995408531877,2.4065333696417,3.03815219002193,0,0,0,3.78035420826868,0.377875943688809,1.69808842831471,2.78914844286822,0.822335776043652,0,4.60307827715441,1.2808035326455,1.18241114944293,6.55016793399575,1.93645405075148,4.06279459783025,5.08254316765033,0.818718450173537,1.34834090667051,5.20342617030534,0.962787081228281,0.639337125799041,2.63881040149373,1.59570926097305,0.852449501065388,4.35313857942876,0.56738522469114,0,4.52247597462138,2.60741459210101,0.868755378820466,2.42159801053347,0,1.26584954976354,1.47878700418359,0.637812899895131,0.419317291016752,1.90958672949042,2.10247649978109,1.6072558669708,0.285012743741249,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,0.639312809217652,0.722878304769133,0,0.869079113764942,0,0.973269740605272,0.378139268656271,1.10864698731282,1.84453049955565,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0.71153252537342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,2.5326102332916,2.1185468930115,7.45775213946916,1.41867352879343,0,2.1349799145941,2.4666754841716,0.622422070799533,0.808264032418128,0.490385709340376,0,1.15235184896,0,0,0,0.149448680551801,0.117434498643765,0.323745888736263,0.140450806702248,0,0.368502951935304,0.103325781175765,1.18800285728205,0.741800787835671,0.910161361938026,0,0,0.125118519871964,0,0,0.919463387397059,0.300476117813194,1.24775401476023,1.97328599257748,0.213557388818567,0,1.20036438433761,0.309157587715317,0.515281080091258,0.18611685633159,1.35021065793013,0.779496041289589,1.51460264546469,0.184099797284599,0,2.84007674013291,0.302256294682921,0,0,0,0,0.853815942907168,0.132529768321485,1.04574548582567,0.518305275076852,0.756962552626885,0.36497735907583,0,3.85944562915731,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0.0925884451585296,0,0,0,0,1.52631302506568,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,1.42198887333556,0,0.845302752556,1.32969058292435,0,0,0,0,0.142977993658148,0,0,0.65147236858747,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.289562613335158,0.410952645100767,0.358121926479791,0,0.197030760201927,0,0.385029108839245,0,0,0,0.335032530668698,1.27587750330633,0.749007023947182,0,0,0.981531933753119,1.00034104211935,0,1.66376689224646,6.42344359669782,1.26161932027148,0.234282829985426,0,0,0,0.664225598535437,0.184369168541703,0.434418072340414,0,0,0.413536052245775,1.2942852049117,0.320182673410333,0,0,0,0.992431231275107,1.99500565274481,1.96462066103151,0.640695746278505,0.511707249066704,4.02134802859019,2.96836132889982,2.31314540703983,1.24293207719189,0.328508624055237,4.67328986265259,1.51073491997947,0.120859449591622,0.200506470303285,0.184161977871793,0.34444334449382,0.728364672026868,0.262248829918848,0.451199612907412,0.231046011313244,0,0,1.47772280450026,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0,0,0,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0.614014698904518,0.413509717453592,0.966782203814463,1.16013355131383,0.511359764496605,0.623224249527161,0.330569830721956,0.192190067365106,0,0.10115778085555,0,8.18512101759664,0,0,0,1.73986598415015,0.74129687641568,0.429374660225974,0,0.316379424718726,0.190630193923825,0,0.855877976067841,0.318203247925937,0.78494864019923,1.07923474549989,1.64722217841633,0.942499218765491,0,1.58510321173008,2.94880919367287,0,3.41198885483798,0,0,0.707027159768564,3.39024349860728,1.65409603063837,0,0.438450885253763,0,0,0,0.30982349809975,1.69017361519345,0.430234056612155,0.0982490410131212,0.7133421029625,0,2.53329162357197,1.31717957183961,0,0,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0.411362273086194,0.648473311192717,0.540031437238115,0,0.106824071127473,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0.296964680832639,0,0.994147647766298,0.281338832821026,0.111308705022906,0.988823245360557,0,2.78947183551498,0,0,0,0,3.11039587661807,0,0,0,0.295930216910801,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,1.04174996959975,0,0.241192877250816,0,0.110579259931225,0.591095237907095,0,0,0,0.153900517007594,0.341826167541004,0,0,0.108647371922008,0.31900115973192,0.183195186803725,0,0,0.156980256395025,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0.995261931078505,0.176915129006678,0,0,0,0,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| |||
|short_description=p12@VCAN | |||
}} |
Revision as of 06:17, 22 January 2014
Short description: | p12@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | 195bp_to_ENST00000515397_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.42e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.42e-16 | 42 |
defensive cell | 1.52e-13 | 48 |
phagocyte | 1.52e-13 | 48 |
multi fate stem cell | 6.37e-11 | 427 |
stem cell | 1.23e-10 | 441 |
somatic stem cell | 2.01e-10 | 433 |
monopoietic cell | 2.12e-09 | 59 |
monocyte | 2.12e-09 | 59 |
monoblast | 2.12e-09 | 59 |
promonocyte | 2.12e-09 | 59 |
macrophage dendritic cell progenitor | 7.08e-09 | 61 |
cardiocyte | 1.34e-08 | 16 |
myeloid lineage restricted progenitor cell | 1.01e-07 | 66 |
granulocyte monocyte progenitor cell | 1.64e-07 | 67 |
cardiac mesenchymal cell | 1.78e-07 | 4 |
migratory trunk neural crest cell | 1.78e-07 | 4 |
mesenchymal cell | 3.13e-07 | 354 |
preadipocyte | 3.76e-07 | 12 |
connective tissue cell | 4.42e-07 | 361 |
fibroblast | 7.50e-07 | 76 |
fibroblast of tunica adventitia of artery | 9.82e-07 | 4 |
fibroblast of the aortic adventitia | 9.82e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
heart | 2.64e-11 | 24 |
primitive heart tube | 2.64e-11 | 24 |
primary heart field | 2.64e-11 | 24 |
anterior lateral plate mesoderm | 2.64e-11 | 24 |
heart tube | 2.64e-11 | 24 |
heart primordium | 2.64e-11 | 24 |
cardiac mesoderm | 2.64e-11 | 24 |
cardiogenic plate | 2.64e-11 | 24 |
heart rudiment | 2.64e-11 | 24 |
mesoderm | 6.42e-10 | 315 |
mesoderm-derived structure | 6.42e-10 | 315 |
presumptive mesoderm | 6.42e-10 | 315 |
primary circulatory organ | 1.39e-09 | 27 |
lateral plate mesoderm | 9.96e-09 | 203 |
splanchnic layer of lateral plate mesoderm | 7.95e-08 | 83 |
musculoskeletal system | 1.17e-07 | 167 |
connective tissue | 3.57e-07 | 371 |
artery wall | 9.82e-07 | 4 |
tunica adventitia of artery | 9.82e-07 | 4 |
adventitia | 9.82e-07 | 4 |
tunica adventitia of blood vessel | 9.82e-07 | 4 |
aorta tunica adventitia | 9.82e-07 | 4 |
aorta wall | 9.82e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.39e-10 | 14 |