FFCP PHASE1:Hg19::chr5:82767523..82767543,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2464 | |||
|TSSclassifier=strong | |||
|UniProt=P13611,Q86W61,Q6MZK8,Q59FG9 | |||
|association_with_transcript=30bp_to_ENST00000342785,ENST00000343200,NM_001126336,NM_001164097,NM_001164098,NM_004385,uc003kih.3,uc003kii.3,uc003kij.3,uc003kik.3,uc010jau.2_5end | |||
|coexpression_cluster_id=C4524 | |||
|description=CAGE_peak_4_at_VCAN_5end | |||
|id=chr5:82767523..82767543,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.23e-21!180;CL:0002057!2.31e-17!42;CL:0000393!1.31e-14!60;CL:0000211!1.31e-14!60;CL:0000860!2.50e-14!45;CL:0000680!7.82e-14!57;CL:0000056!7.82e-14!57;CL:0000355!7.82e-14!57;CL:0000187!7.95e-14!54;CL:0000183!1.20e-12!59;CL:0000057!7.38e-12!75;CL:0000048!9.89e-12!430;CL:0000034!2.20e-11!444;CL:0000723!7.03e-11!436;CL:0000192!2.76e-10!42;CL:0000514!2.76e-10!42;CL:0000359!1.10e-09!32;CL:0002334!2.06e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.53e-16;33!CL:0002057;2.53e-16;33!CL:0000473;2.62e-10;39!CL:0000234;2.62e-10;39!CL:0000359;2.16e-09;32!CL:0000576;6.27e-09;48!CL:0000393;2.50e-08;61!CL:0000211;2.50e-08;61!CL:0000187;2.96e-08;55!CL:0000192;4.52e-08;43!CL:0002334;1.51e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.08e-18,42;CL:0002057,8.08e-18,42;CL:0000393,4.49e-15,61;CL:0000211,4.49e-15,61;CL:0000680,2.82e-14,58;CL:0000056,2.82e-14,58;CL:0000355,2.82e-14,58;CL:0000187,2.90e-14,55;CL:0000473,1.24e-13,48;CL:0000234,1.24e-13,48;CL:0000048,3.14e-13,427;CL:0000034,6.49e-13,441;CL:0000723,2.08e-12,433;CL:0000057,2.82e-12,76;CL:0000192,1.27e-10,43;CL:0000514,1.27e-10,43;CL:0000359,6.42e-10,32;CL:0002194,1.08e-07,59;CL:0000576,1.08e-07,59;CL:0000040,1.08e-07,59;CL:0000559,1.08e-07,59;CL:0002334,1.39e-07,12;CL:0002009,7.67e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;3.18e-13;42!CL:0000514;4.52e-08;43!CL:0000355;4.80e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!3.47e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.00e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.23e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!3.20e-17!659;UBERON:0002204!2.61e-16!167;UBERON:0000914!3.35e-14!83;UBERON:0002329!3.35e-14!83;UBERON:0003077!3.35e-14!83;UBERON:0003059!3.35e-14!83;UBERON:0007282!3.35e-14!83;UBERON:0009618!3.35e-14!83;UBERON:0007285!3.35e-14!83;UBERON:0001134!4.75e-14!61;UBERON:0002036!4.75e-14!61;UBERON:0003082!4.75e-14!61;UBERON:0000467!4.81e-14!625;UBERON:0000480!9.28e-14!626;UBERON:0002385!9.63e-14!63;UBERON:0001015!9.63e-14!63;UBERON:0000383!9.63e-14!63;UBERON:0004290!1.65e-13!70;UBERON:0000922!7.82e-12!612;UBERON:0002050!2.15e-10!605;UBERON:0005423!2.15e-10!605;UBERON:0000923!3.74e-10!604;UBERON:0005291!3.74e-10!604;UBERON:0006598!3.74e-10!604;UBERON:0002532!3.74e-10!604;UBERON:0000486!1.80e-09!82;UBERON:0000479!1.97e-09!787;UBERON:0003081!5.31e-09!216;UBERON:0000926!7.47e-09!448;UBERON:0004120!7.47e-09!448;UBERON:0006603!7.47e-09!448;UBERON:0000948!1.49e-08!24;UBERON:0005498!1.49e-08!24;UBERON:0004140!1.49e-08!24;UBERON:0009881!1.49e-08!24;UBERON:0004141!1.49e-08!24;UBERON:0003084!1.49e-08!24;UBERON:0007005!1.49e-08!24;UBERON:0004139!1.49e-08!24;UBERON:0004291!1.49e-08!24;UBERON:0007100!3.98e-08!27;UBERON:0001009!4.61e-08!113;UBERON:0004535!4.81e-08!110;UBERON:0005256!7.19e-08!143;UBERON:0004872!4.11e-07!84;UBERON:0001637!5.32e-07!42;UBERON:0003509!5.32e-07!42;UBERON:0004572!5.32e-07!42;UBERON:0000062!6.02e-07!511;UBERON:0004573!6.61e-07!33;UBERON:0004571!6.61e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;4.00e-08;22!UBERON:0002385;5.84e-08;31!UBERON:0001015;5.84e-08;31!UBERON:0000383;5.84e-08;31!UBERON:0007100;1.01e-07;25!UBERON:0004573;9.22e-07;33!UBERON:0004571;9.22e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.66e-18,167;UBERON:0000926,1.60e-17,315;UBERON:0004120,1.60e-17,315;UBERON:0006603,1.60e-17,315;UBERON:0001134,1.67e-14,62;UBERON:0002036,1.67e-14,62;UBERON:0003082,1.67e-14,62;UBERON:0002385,3.44e-14,64;UBERON:0001015,3.44e-14,64;UBERON:0000383,3.44e-14,64;UBERON:0007524,4.23e-14,73;UBERON:0002329,5.90e-14,71;UBERON:0003059,5.90e-14,71;UBERON:0007282,5.90e-14,71;UBERON:0004290,5.90e-14,71;UBERON:0009618,5.90e-14,71;UBERON:0003077,8.00e-14,72;UBERON:0007285,8.00e-14,72;UBERON:0007503,3.16e-12,78;UBERON:0000922,8.83e-12,592;UBERON:0005423,8.56e-11,581;UBERON:0000479,9.18e-10,773;UBERON:0000486,1.11e-09,83;UBERON:0003081,3.14e-09,203;UBERON:0002050,4.45e-09,564;UBERON:0000948,9.37e-09,24;UBERON:0005498,9.37e-09,24;UBERON:0004140,9.37e-09,24;UBERON:0009881,9.37e-09,24;UBERON:0004141,9.37e-09,24;UBERON:0003084,9.37e-09,24;UBERON:0007005,9.37e-09,24;UBERON:0004139,9.37e-09,24;UBERON:0004291,9.37e-09,24;UBERON:0000923,1.08e-08,560;UBERON:0010316,1.08e-08,560;UBERON:0005291,1.08e-08,560;UBERON:0006598,1.08e-08,560;UBERON:0010317,1.08e-08,560;UBERON:0002532,1.08e-08,560;UBERON:0001009,1.43e-08,112;UBERON:0004535,1.47e-08,109;UBERON:0007100,2.57e-08,27;UBERON:0003104,1.62e-07,160;UBERON:0009142,1.62e-07,160;UBERON:0004872,2.32e-07,83;UBERON:0004573,2.45e-07,33;UBERON:0004571,2.45e-07,33;UBERON:0001637,2.62e-07,42;UBERON:0003509,2.62e-07,42;UBERON:0004572,2.62e-07,42 | |||
|phase1_expression=33.0654650272413,13.9165340529139,40.4539139755437,10.007329835313,14.7497161161005,26.1701557230111,12.6649939084155,5.68547886084148,6.7908263331958,3.68600904752263,1.39560233594486,0.436882744260345,2.11013582582763,5.321953177282,4.97096063591874,18.1527789541979,20.4916139528152,19.7183724404591,23.4207743419443,10.0959267622966,7.95602695852587,13.7920077450359,18.6053391635187,20.8049126110784,20.7145355331425,0,0,0.0787107813136792,10.6208354749204,31.0901812458742,26.1639248404168,1.83884244895785,0.90361775633475,0.369754010166788,0,0,0,31.577738286317,38.1034450193269,27.1263588394815,0.223915474239924,0,0.515151135268373,45.5096487380038,18.8937971844405,23.2880698740304,58.3396882633268,20.9695622891131,18.8920886246013,50.0584762640542,32.2762490226667,24.1211874486357,70.3281188702702,33.565203546359,36.5651513804723,50.4489469974181,13.6453075028923,16.1800908800461,58.1559395504715,28.8836124368484,20.4587880255693,63.6613009360362,25.9302754908121,21.7374622771674,46.723687419202,21.5606385382633,23.0444232128363,60.8021769921319,25.5526630025899,32.3611378610624,36.9293696606355,32.4084319669057,26.5828405450343,9.92899845666126,6.37812899895131,8.17668717482666,85.0327737778968,77.4912767062173,84.22020742927,1.99508920618874,2.78483348078726,2.19196984517561,0,0.546138611262131,0.889509253863555,2.13365111283254,0.800791974072025,0.574752439954483,0,0.954053754535364,0,2.34894875748376,0,0,2.24203425192614,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0.552700035571697,0.579606171470105,0,0,0,0,0,0,0,0.95569624297229,0,0.950452044448374,3.312652619711,1.53583933385302,3.74792179657038,2.60454977248419,0,0,0,0,17.0664806419773,21.4624275105164,8.18320395798594,13.7346877906135,8.52274448081012,6.51809335323707,20.6774346233286,9.24606253575008,20.9867294104231,27.7161746828205,31.0056793496735,1.96468613246569,0,0.370784442784429,0,0,0.26591592103773,1.19245312152671,2.85997455390064,0.371457501329565,0,2.58070378531837,0,1.69592382577203,0.419499436209906,0,1.04497483268405,5.16833518338658,4.98072767761394,3.3472061276467,0,0,0,0,0,0,0,0,0,0,0.549605231791222,0,0,0.872188104285069,42.7395878457974,46.2201367575716,92.0243806651871,236.353375497023,40.0775271884143,13.4562624034154,21.349799145941,15.2933880018639,51.0386098055617,23.1702355959863,24.6827473701323,9.38416051398575,12.09969441408,2.10889288650417,1.87296046098192,1.1409436430889,1.34503812496621,7.75067691048848,8.25552016277471,8.70795001553941,2.44985005505872,5.65037859634133,7.33613046347935,27.3240657174872,14.0942149688777,2.73048408581408,1.43723628363248,11.6151918628306,9.63412603014124,3.3247693858102,7.02364193409341,11.9530240361618,21.1835663058301,14.7461838108027,57.5840730561247,17.7252632719411,8.47727604638247,33.6102027614531,9.68693774841326,26.2793350846542,9.49195967291108,89.2826797556298,32.6413967290015,32.5639568774908,7.91629128323774,6.62748832957129,50.0563525448426,17.0271046004712,2.88253006927829,0.57978255948989,0.272746120590835,0,13.2951339681259,18.024048491722,12.8975276585165,14.2015645371057,16.9054970086671,10.5843434131991,9.38697193978896,10.2918550110862,5.52539685409922,2.3218396401599,0,0,0,0,0,0,0,0,0,0,0,9.81692416624121,2.057870056657,0,0,0,2.36315962672562,0,1.22988438543114,10.6372042385086,2.63400684980701,0,0,2.87024179991442,0,1.03993478527958,4.3299402607582,1.73895607462615,119.639459426302,0,0,0,0,0,1.23108503043699,0.468008530278475,1.18904929830983,3.74935335947108,11.7587489739202,2.69372684760534,6.53777215730793,4.65014301622339,1.91691339582606,0,0,1.24396869324463,0.720599767084807,0.50496973370552,0,0,0,6.84289784090821,0.514137463516618,0,0,3.92458795208763,4.79556075716608,6.08707772313885,40.4620470321844,7.15312891703765,5.071816515336,15.4244107619225,3.12022310734098,1.80045161983499,0,1.3321108950805,5.57614175266775,0,1.64648067356154,6.84045987016844,2.84313558994037,9.50342247520115,7.23454504943007,18.3022026306062,5.69846049737725,0,0,2.10833939483032,7.66799537573064,1.14861935834114,22.8219048065149,6.65994010670864,2.87666851570537,15.399242838631,0,1.37921532141349,0.431255149719035,1.66845947163673,12.7047312111232,31.2335649258292,6.95959931499926,13.2337849614136,7.65526501983796,0,0,0,15.5818194483308,9.50323990013386,4.34024037919577,15.8057854763413,16.7723249469332,10.7237642223076,20.7340304537102,8.42649079237613,4.5481500811197,4.1389228517002,13.9487375692442,4.79359838208428,6.42938747063813,1.76221041716467,2.74514739048685,21.0903386645345,17.2571360654893,14.5149478612684,0,3.32870879020994,0,60.042089492144,136.120770306511,34.5211916152681,42.414058403637,31.7258494421356,42.626289103056,14.8418066444991,15.8835984616735,30.0079315779185,33.9185154337032,40.5018454763225,21.4989200150925,2.05461064305758,9.42380410425439,1.10497186723076,8.03701137152247,5.28064387219479,1.04899531967539,5.41439535488894,11.0131932059313,22.7461433061288,11.6911379722609,29.9766626055767,0,0,8.4207207279834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| |||
|short_description=p4@VCAN | |||
}} |
Revision as of 06:17, 22 January 2014
Short description: | p4@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VCAN_5end |
Coexpression cluster: | C4524_Fibroblast_Smooth_Preadipocyte_Lens_CD14_mesenchymal_serous |
Association with transcript: | 30bp_to_ENST00000342785, ENST00000343200, NM_001126336, NM_001164097, NM_001164098, NM_004385, uc003kih.3, uc003kii.3, uc003kij.3, uc003kik.3, uc010jau.2_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | P13611Q86W61Q6MZK8Q59FG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.08e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.08e-18 | 42 |
electrically responsive cell | 4.49e-15 | 61 |
electrically active cell | 4.49e-15 | 61 |
muscle precursor cell | 2.82e-14 | 58 |
myoblast | 2.82e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.82e-14 | 58 |
muscle cell | 2.90e-14 | 55 |
defensive cell | 1.24e-13 | 48 |
phagocyte | 1.24e-13 | 48 |
multi fate stem cell | 3.14e-13 | 427 |
stem cell | 6.49e-13 | 441 |
somatic stem cell | 2.08e-12 | 433 |
fibroblast | 2.82e-12 | 76 |
smooth muscle cell | 1.27e-10 | 43 |
smooth muscle myoblast | 1.27e-10 | 43 |
vascular associated smooth muscle cell | 6.42e-10 | 32 |
monopoietic cell | 1.08e-07 | 59 |
monocyte | 1.08e-07 | 59 |
monoblast | 1.08e-07 | 59 |
promonocyte | 1.08e-07 | 59 |
preadipocyte | 1.39e-07 | 12 |
macrophage dendritic cell progenitor | 7.67e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.23e-08 | 14 |