FFCP PHASE1:Hg19::chr4:175131715..175131722,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C85 | |||
|description=CAGE_peak_at_chr4:175131715..175131722,+ | |||
|id=chr4:175131715..175131722,+ | |||
|ontology_enrichment_celltype=CL:0002195!6.02e-30!2;CL:0002571!6.02e-30!2;CL:0000632!1.86e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002195;1.75e-130;2!CL:0002571;1.75e-130;2!CL:0000333;1.40e-14;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,1.75e-130,2;CL:0002571,1.75e-130,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!1.18e-10!6;DOID:171!9.76e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:169;2.19e-12;6!DOID:171;5.73e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.19e-12,6;DOID:171,5.73e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000013!1.34e-12!5;UBERON:0002410!1.34e-12!5;UBERON:0009497!1.85e-09!25;UBERON:0000015!1.85e-09!25;UBERON:0002423!1.85e-09!25;UBERON:0006235!1.85e-09!25;UBERON:0004161!1.85e-09!25;UBERON:0002107!1.99e-07!19;UBERON:0006925!1.99e-07!19;UBERON:0008836!1.99e-07!19;UBERON:0000010!2.15e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;5.66e-15;19!UBERON:0006925;5.66e-15;19!UBERON:0000013;1.40e-14;5!UBERON:0002410;1.40e-14;5!UBERON:0002423;1.15e-11;25!UBERON:0002368;6.52e-10;33!UBERON:0002365;2.91e-09;31!UBERON:0002330;2.91e-09;31!UBERON:0000010;1.04e-08;8!UBERON:0000949;5.80e-08;43!UBERON:0005172;4.59e-07;52!UBERON:0005173;4.59e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.66e-15,19;UBERON:0006925,5.66e-15,19;UBERON:0008836,5.66e-15,19;UBERON:0000013,1.40e-14,5;UBERON:0002410,1.40e-14,5;UBERON:0008835,4.26e-13,22;UBERON:0003894,4.26e-13,22;UBERON:0009854,1.41e-12,23;UBERON:0007499,1.15e-11,25;UBERON:0009497,1.15e-11,25;UBERON:0000015,1.15e-11,25;UBERON:0002423,1.15e-11,25;UBERON:0006235,1.15e-11,25;UBERON:0004161,1.15e-11,25;UBERON:0009856,2.91e-11,26;UBERON:0002365,1.25e-09,31;UBERON:0002330,1.25e-09,31;UBERON:0000010,1.04e-08,8;UBERON:0002368,1.18e-08,35;UBERON:0000949,5.75e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71573592389777,0,0,0,1.42156779497018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22051425302051,0,0,0.873677105536111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:175131715..175131722,+ | |||
}} |
Revision as of 04:02, 22 January 2014
Short description: | p@chr4:175131715..175131722, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:175131715..175131722, + |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 1.75e-130 | 2 |
hepatic mesenchymal stem cell | 1.75e-130 | 2 |
Ontology term | p-value | n |
---|---|---|
liver | 5.66e-15 | 19 |
digestive gland | 5.66e-15 | 19 |
liver bud | 5.66e-15 | 19 |
sympathetic nervous system | 1.40e-14 | 5 |
autonomic nervous system | 1.40e-14 | 5 |
hepatic diverticulum | 4.26e-13 | 22 |
liver primordium | 4.26e-13 | 22 |
digestive tract diverticulum | 1.41e-12 | 23 |
epithelial sac | 1.15e-11 | 25 |
epithelium of foregut-midgut junction | 1.15e-11 | 25 |
anatomical boundary | 1.15e-11 | 25 |
hepatobiliary system | 1.15e-11 | 25 |
foregut-midgut junction | 1.15e-11 | 25 |
septum transversum | 1.15e-11 | 25 |
sac | 2.91e-11 | 26 |
exocrine gland | 1.25e-09 | 31 |
exocrine system | 1.25e-09 | 31 |
peripheral nervous system | 1.04e-08 | 8 |
endocrine gland | 1.18e-08 | 35 |
endocrine system | 5.75e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.19e-12 | 6 |
neuroectodermal tumor | 5.73e-08 | 10 |