Personal tools

FFCP PHASE1:Hg19::chr4:87770064..87770069,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=345274|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30603|TSSclassifier=W|UniProt=Q3KNW5|association_with_transcript=198bp_to_AJ583502,BC107051,BC107052_5end|description=CAGE_peak_13_at_SLC10A6_5end|id=chr4:87770064..87770069,-|ontology_enrichment_celltype=CL:0002621!4.65e-27!3;CL:0000362!3.53e-23!8;CL:0000312!5.03e-17!5;CL:0002159!1.51e-14!13;CL:0000240!2.33e-14!6;CL:0000311!2.33e-14!6;CL:0000079!2.33e-14!6;CL:0000237!2.33e-14!6;CL:0000036!2.33e-14!6;CL:0000357!2.33e-14!6;CL:0000114!2.33e-14!6;CL:0000317!2.23e-11!2;CL:1000448!2.23e-11!2;CL:0002308!2.23e-11!2;CL:0002140!2.23e-11!2;CL:0002077!4.02e-10!33;CL:0002567!4.52e-08!3;CL:0000068!8.29e-08!3;CL:0000069!8.29e-08!3;CL:0000307!8.29e-08!3;CL:0000377!8.29e-08!3|ontology_enrichment_celltype_v019=CL:0000317;5.04e-34;2!CL:1000448;5.04e-34;2!CL:0002308;5.04e-34;2!CL:0002140;5.04e-34;2!CL:0000362;3.09e-30;9!CL:0002567;3.27e-23;3!CL:0002159;6.48e-20;14!CL:0002077;2.35e-15;34!CL:0000312;1.60e-14;5!CL:0000622;1.60e-14;5!CL:0000240;2.45e-12;6!CL:0000311;2.45e-12;6!CL:0000079;2.45e-12;6!CL:0000237;2.45e-12;6!CL:0000154;2.45e-12;6!CL:0000150;1.12e-08;9!CL:0000148;6.13e-08;10|ontology_enrichment_celltype_v019_2=CL:0000317,7.05e-34,2;CL:1000448,7.05e-34,2;CL:0002308,7.05e-34,2;CL:0002140,7.05e-34,2;CL:0000362,3.59e-30,9;CL:0002567,2.62e-23,3;CL:0002159,7.13e-20,14;CL:0002077,1.78e-18,34;CL:0000312,1.60e-14,5;CL:0000622,1.83e-14,5;CL:0000240,2.45e-12,6;CL:0000311,2.45e-12,6;CL:0000079,2.45e-12,6;CL:0000237,2.45e-12,6;CL:0000036,2.45e-12,6;CL:0000357,2.45e-12,6;CL:0000114,2.45e-12,6;CL:0000154,2.74e-12,6;CL:0000221,4.40e-09,72;CL:0000150,1.21e-08,9;CL:0000148,5.73e-08,10;CL:0000541,5.73e-08,10|ontology_enrichment_development_v019=CL:0000357;2.45e-12;6!CL:0000114;2.45e-12;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001949!4.65e-27!3;UBERON:0000989!3.45e-21!1;UBERON:0008811!3.45e-21!1;UBERON:0006258!3.45e-21!1;UBERON:0005876!3.45e-21!1;UBERON:0004874!3.45e-21!1;UBERON:0001003!1.47e-13!14;UBERON:0007376!1.47e-13!14;UBERON:0007383!1.47e-13!14;UBERON:0002419!2.23e-11!2;UBERON:0007771!2.23e-11!2;UBERON:0003297!2.23e-11!2;UBERON:0001821!2.23e-11!2;UBERON:0003487!2.23e-11!2;UBERON:0001820!2.23e-11!2;UBERON:0005089!2.23e-11!2;UBERON:0005088!2.23e-11!2;UBERON:0001828!8.47e-11!8|ontology_enrichment_uberon_v019=UBERON:0002419;5.04e-34;2!UBERON:0007771;5.04e-34;2!UBERON:0003297;5.04e-34;2!UBERON:0001821;5.04e-34;2!UBERON:0003487;5.04e-34;2!UBERON:0001820;5.04e-34;2!UBERON:0001003;1.13e-18;15!UBERON:0007376;1.13e-18;15!UBERON:0010371;2.79e-09;31!UBERON:0002097;9.94e-08;41!UBERON:0003102;4.46e-07;50|ontology_enrichment_uberon_v019_2=UBERON:0002419,7.05e-34,2;UBERON:0007771,7.05e-34,2;UBERON:0003297,7.05e-34,2;UBERON:0001821,7.05e-34,2;UBERON:0003487,7.05e-34,2;UBERON:0001820,7.05e-34,2;UBERON:0005089,7.05e-34,2;UBERON:0005088,7.05e-34,2;UBERON:0001003,1.24e-18,15;UBERON:0007376,1.24e-18,15;UBERON:0007383,1.24e-18,15;UBERON:0002097,1.52e-07,41;UBERON:0002199,7.74e-07,46;UBERON:0002416,7.74e-07,46|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,1.3068766413512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p13@SLC10A6}}
{{FFCP
|DHSsupport=not supported
|DPIdataset=robust
|EntrezGene=345274
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=30603
|TSSclassifier=weak
|UniProt=Q3KNW5
|association_with_transcript=198bp_to_AJ583502,BC107051,BC107052_5end
|description=CAGE_peak_13_at_SLC10A6_5end
|id=chr4:87770064..87770069,-
|ontology_enrichment_celltype=CL:0002621!4.65e-27!3;CL:0000362!3.53e-23!8;CL:0000312!5.03e-17!5;CL:0002159!1.51e-14!13;CL:0000240!2.33e-14!6;CL:0000311!2.33e-14!6;CL:0000079!2.33e-14!6;CL:0000237!2.33e-14!6;CL:0000036!2.33e-14!6;CL:0000357!2.33e-14!6;CL:0000114!2.33e-14!6;CL:0000317!2.23e-11!2;CL:1000448!2.23e-11!2;CL:0002308!2.23e-11!2;CL:0002140!2.23e-11!2;CL:0002077!4.02e-10!33;CL:0002567!4.52e-08!3;CL:0000068!8.29e-08!3;CL:0000069!8.29e-08!3;CL:0000307!8.29e-08!3;CL:0000377!8.29e-08!3
|ontology_enrichment_celltype_v019=CL:0000317;5.04e-34;2!CL:1000448;5.04e-34;2!CL:0002308;5.04e-34;2!CL:0002140;5.04e-34;2!CL:0000362;3.09e-30;9!CL:0002567;3.27e-23;3!CL:0002159;6.48e-20;14!CL:0002077;2.35e-15;34!CL:0000312;1.60e-14;5!CL:0000622;1.60e-14;5!CL:0000240;2.45e-12;6!CL:0000311;2.45e-12;6!CL:0000079;2.45e-12;6!CL:0000237;2.45e-12;6!CL:0000154;2.45e-12;6!CL:0000150;1.12e-08;9!CL:0000148;6.13e-08;10
|ontology_enrichment_celltype_v019_2=CL:0000317,7.05e-34,2;CL:1000448,7.05e-34,2;CL:0002308,7.05e-34,2;CL:0002140,7.05e-34,2;CL:0000362,3.59e-30,9;CL:0002567,2.62e-23,3;CL:0002159,7.13e-20,14;CL:0002077,1.78e-18,34;CL:0000312,1.60e-14,5;CL:0000622,1.83e-14,5;CL:0000240,2.45e-12,6;CL:0000311,2.45e-12,6;CL:0000079,2.45e-12,6;CL:0000237,2.45e-12,6;CL:0000036,2.45e-12,6;CL:0000357,2.45e-12,6;CL:0000114,2.45e-12,6;CL:0000154,2.74e-12,6;CL:0000221,4.40e-09,72;CL:0000150,1.21e-08,9;CL:0000148,5.73e-08,10;CL:0000541,5.73e-08,10
|ontology_enrichment_development_v019=CL:0000357;2.45e-12;6!CL:0000114;2.45e-12;6
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001949!4.65e-27!3;UBERON:0000989!3.45e-21!1;UBERON:0008811!3.45e-21!1;UBERON:0006258!3.45e-21!1;UBERON:0005876!3.45e-21!1;UBERON:0004874!3.45e-21!1;UBERON:0001003!1.47e-13!14;UBERON:0007376!1.47e-13!14;UBERON:0007383!1.47e-13!14;UBERON:0002419!2.23e-11!2;UBERON:0007771!2.23e-11!2;UBERON:0003297!2.23e-11!2;UBERON:0001821!2.23e-11!2;UBERON:0003487!2.23e-11!2;UBERON:0001820!2.23e-11!2;UBERON:0005089!2.23e-11!2;UBERON:0005088!2.23e-11!2;UBERON:0001828!8.47e-11!8
|ontology_enrichment_uberon_v019=UBERON:0002419;5.04e-34;2!UBERON:0007771;5.04e-34;2!UBERON:0003297;5.04e-34;2!UBERON:0001821;5.04e-34;2!UBERON:0003487;5.04e-34;2!UBERON:0001820;5.04e-34;2!UBERON:0001003;1.13e-18;15!UBERON:0007376;1.13e-18;15!UBERON:0010371;2.79e-09;31!UBERON:0002097;9.94e-08;41!UBERON:0003102;4.46e-07;50
|ontology_enrichment_uberon_v019_2=UBERON:0002419,7.05e-34,2;UBERON:0007771,7.05e-34,2;UBERON:0003297,7.05e-34,2;UBERON:0001821,7.05e-34,2;UBERON:0003487,7.05e-34,2;UBERON:0001820,7.05e-34,2;UBERON:0005089,7.05e-34,2;UBERON:0005088,7.05e-34,2;UBERON:0001003,1.24e-18,15;UBERON:0007376,1.24e-18,15;UBERON:0007383,1.24e-18,15;UBERON:0002097,1.52e-07,41;UBERON:0002199,7.74e-07,46;UBERON:0002416,7.74e-07,46
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768251997860379,0,1.3068766413512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p13@SLC10A6
}}

Revision as of 02:05, 22 January 2014

Short description:p13@SLC10A6
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): No
DHS support(Yes/No): No
Description: CAGE_peak_13_at_SLC10A6_5end
Coexpression cluster:NA
Association with transcript: 198bp_to_AJ583502, BC107051, BC107052_5end
EntrezGene:SLC10A6
HGNC: 30603
UniProt: Q3KNW5
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0.0
0.5
1.0
1.5
2.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr4:87770064..87770069,-&oldid=3211274"