FFCP PHASE1:Hg19::chr4:43341835..43341849,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1401 | |||
|description=CAGE_peak_at_chr4:43341835..43341849,+ | |||
|id=chr4:43341835..43341849,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.12e-17!180;CL:0000680!1.77e-15!57;CL:0000056!1.77e-15!57;CL:0000355!1.77e-15!57;CL:0000187!6.99e-14!54;CL:0000188!2.55e-13!9;CL:0000183!2.93e-13!59;CL:0000393!8.24e-12!60;CL:0000211!8.24e-12!60;CL:0002570!9.26e-12!8;CL:0000057!1.64e-10!75;CL:0000048!9.96e-10!430;CL:0000723!2.58e-09!436;CL:0000034!8.75e-09!444;CL:0002620!3.76e-08!23;CL:0000192!1.69e-07!42;CL:0000514!1.69e-07!42;CL:0000548!7.47e-07!679;CL:0000004!7.47e-07!679;CL:0000255!7.47e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000188;2.76e-16;9!CL:0002601;6.73e-11;1!CL:0000228;2.62e-10;1!CL:0002372;2.62e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,3.79e-16,9;CL:0002601,6.73e-11,1;CL:0000228,2.50e-10,1;CL:0002372,2.50e-10,1;CL:0000187,2.38e-07,55;CL:0000680,6.24e-07,58;CL:0000056,6.24e-07,58;CL:0000355,6.24e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.27e-14!14;DOID:120!8.22e-09!27;DOID:0060072!1.89e-08!4;DOID:193!5.51e-08!29;DOID:0060084!2.87e-07!3;DOID:127!2.87e-07!3 | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.05e-13;3!DOID:127;2.05e-13;3!DOID:0060072;2.75e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.93e-13,3;DOID:127,1.93e-13,3;DOID:0060072,2.62e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.67e-16!83;UBERON:0002329!5.67e-16!83;UBERON:0003077!5.67e-16!83;UBERON:0003059!5.67e-16!83;UBERON:0007282!5.67e-16!83;UBERON:0009618!5.67e-16!83;UBERON:0007285!5.67e-16!83;UBERON:0004290!1.32e-15!70;UBERON:0000486!2.16e-14!82;UBERON:0001134!5.75e-14!61;UBERON:0002036!5.75e-14!61;UBERON:0003082!5.75e-14!61;UBERON:0002385!2.76e-13!63;UBERON:0001015!2.76e-13!63;UBERON:0000383!2.76e-13!63;UBERON:0003100!1.09e-10!41;UBERON:0003134!1.34e-09!37;UBERON:0000474!1.34e-09!37;UBERON:0001135!7.73e-09!15;UBERON:0005256!1.44e-08!143;UBERON:0002119!1.48e-08!4;UBERON:0004531!1.48e-08!4;UBERON:0005156!1.54e-08!59;UBERON:0000990!1.54e-08!59;UBERON:0000992!4.14e-08!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.98e-09;16!UBERON:0002036;2.98e-09;16!UBERON:0002385;3.27e-07;31!UBERON:0001015;3.27e-07;31!UBERON:0000383;3.27e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000995,2.73e-07,21;UBERON:0005795,5.78e-07,22;UBERON:0003975,5.78e-07,22 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.982935746006035,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0.975865597581014,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.76673050927588,0.286836620748814,0,0,0,0,0,0,0,0,0,0.234321431833797,0.312160076830321,0,0.298897361103602,0.117434498643765,0,0.140450806702248,0.204154171254893,0.368502951935304,0.103325781175765,0,0,0.910161361938026,0,0.336672227908132,0.250237039743928,0,0,0,0.150238058906597,0,0.717558542755448,0,0,1.80054657650641,0.103052529238439,0.515281080091258,0,0.337552664482532,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0.845302752556,0.26593811658487,0,0,0,0,0,0,0,0.65147236858747,0,0,0.301439377059586,0,0,0,0,0,0,0,1.42636905040718,0,0.410952645100767,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0.492762936082855,3.11552657510173,0,0,0,0,0.114814448164607,1.45672934405374,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06337790121334,2.00263202249038,0.307007349452259,0.964856007391714,0.859361958946189,0.290033387828457,1.10794615640931,0,0.165284915360978,0,0.255225424989168,0,0.464845549297286,0.31481234683064,0,0.308033580176089,0,3.47973196830029,0.37064843820784,0,0,0,0,0,0,0.636406495851874,0,0.359744915166629,0.54907405947211,0.589062011728432,0,0,0,0,0.243713489631284,0,0.272999822815972,0,0,1.10273068709225,0,0,0,0,0.202910376962704,0,0,0,0,0,8.51426553769435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.416024019039416,0,0.391969589657511,0.435296032902013,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75635766871975,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316801009558219,0,0,0,0,0,2.17199840701485,0.864221491201268,3.5924609612035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895528817321244,0.934853239388898,1.66441758450784,0,0,0,0,0,0.777186002913902,0,0.63718706865481,1.79921244865442,0.621051827505038,0.829412415681711,0.53168342911599,0,0.300515217994437,0.761610424337591,0.406870733204662,0.181848659202559,0.322231671127465,0,0.398095888698616,0,1.03018711554838,0.336749488765919,0,0,0,0,0,0,0,1.07453304648892,0,0,0,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0.407016343054873,1.17400080465487,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:43341835..43341849,+ | |||
}} |
Revision as of 00:54, 22 January 2014
Short description: | p@chr4:43341835..43341849, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:43341835..43341849, + |
Coexpression cluster: | C1401_Smooth_Fibroblast_leiomyoma_malignant_Small_Skeletal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 3.79e-16 | 9 |
uterine smooth muscle cell | 6.73e-11 | 1 |
multinucleate cell | 2.50e-10 | 1 |
myotube | 2.50e-10 | 1 |
muscle cell | 2.38e-07 | 55 |
muscle precursor cell | 6.24e-07 | 58 |
myoblast | 6.24e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.24e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
uterus | 2.73e-07 | 21 |
embryonic uterus | 5.78e-07 | 22 |
internal female genitalia | 5.78e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.93e-13 | 3 |
leiomyoma | 1.93e-13 | 3 |
benign neoplasm | 2.62e-10 | 4 |