FFCP PHASE1:Hg19::chr4:43341772..43341787,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1401 | |||
|description=CAGE_peak_at_chr4:43341772..43341787,+ | |||
|id=chr4:43341772..43341787,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.99e-15!180;CL:0000680!1.12e-13!57;CL:0000056!1.12e-13!57;CL:0000355!1.12e-13!57;CL:0000188!6.97e-13!9;CL:0000183!1.84e-11!59;CL:0000187!3.04e-11!54;CL:0000057!1.04e-09!75;CL:0000393!2.23e-09!60;CL:0000211!2.23e-09!60;CL:0000548!5.88e-09!679;CL:0000004!5.88e-09!679;CL:0000255!5.88e-09!679;CL:0000012!9.31e-09!682;CL:0002620!2.19e-08!23;CL:0002539!5.89e-07!10;CL:0000048!7.98e-07!430;CL:0000723!9.54e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000188;1.31e-17;9!CL:0000680;1.08e-11;7!CL:0002539;2.94e-08;10!CL:0000056;9.97e-08;4!CL:0000187;1.20e-07;55!CL:0000723;3.28e-07;61!CL:0002570;6.27e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.12e-17,9;CL:0000680,1.37e-12,58;CL:0000056,1.37e-12,58;CL:0000355,1.37e-12,58;CL:0000187,2.53e-10,55;CL:0000393,5.67e-09,61;CL:0000211,5.67e-09,61;CL:0002539,2.42e-08,10;CL:0000515,1.06e-07,4;CL:0002570,5.45e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000355;3.53e-08;58!CL:0000515;9.97e-08;4 | |||
|ontology_enrichment_disease=DOID:2394!2.52e-11!14;DOID:0060072!7.12e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.81e-11;14!DOID:120;8.67e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.50e-11,14;DOID:120,7.64e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.40e-16!83;UBERON:0002329!2.40e-16!83;UBERON:0003077!2.40e-16!83;UBERON:0003059!2.40e-16!83;UBERON:0007282!2.40e-16!83;UBERON:0009618!2.40e-16!83;UBERON:0007285!2.40e-16!83;UBERON:0004290!1.21e-15!70;UBERON:0000486!5.99e-15!82;UBERON:0001134!3.28e-12!61;UBERON:0002036!3.28e-12!61;UBERON:0003082!3.28e-12!61;UBERON:0002385!1.49e-11!63;UBERON:0001015!1.49e-11!63;UBERON:0000383!1.49e-11!63;UBERON:0005256!8.30e-10!143;UBERON:0003102!5.78e-09!95;UBERON:0001135!6.11e-08!15;UBERON:0002199!1.07e-07!45;UBERON:0002416!1.07e-07!45;UBERON:0004237!5.89e-07!10;UBERON:0004695!5.89e-07!10;UBERON:0002111!5.89e-07!10;UBERON:0004178!5.89e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;8.75e-18;31!UBERON:0001015;8.75e-18;31!UBERON:0000383;8.75e-18;31!UBERON:0001134;2.60e-15;16!UBERON:0002036;2.60e-15;16!UBERON:0004237;2.94e-08;10!UBERON:0004695;2.94e-08;10!UBERON:0002111;2.94e-08;10!UBERON:0004178;2.94e-08;10!UBERON:0003134;8.99e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.13e-13,83;UBERON:0002329,3.28e-12,71;UBERON:0003059,3.28e-12,71;UBERON:0007282,3.28e-12,71;UBERON:0004290,3.28e-12,71;UBERON:0009618,3.28e-12,71;UBERON:0003077,5.62e-12,72;UBERON:0007285,5.62e-12,72;UBERON:0007524,9.46e-12,73;UBERON:0001134,1.63e-11,62;UBERON:0002036,1.63e-11,62;UBERON:0003082,1.63e-11,62;UBERON:0002385,4.97e-11,64;UBERON:0001015,4.97e-11,64;UBERON:0000383,4.97e-11,64;UBERON:0007503,1.04e-10,78;UBERON:0004237,2.42e-08,10;UBERON:0004695,2.42e-08,10;UBERON:0002111,2.42e-08,10;UBERON:0004178,2.42e-08,10;UBERON:0005256,9.82e-08,122;UBERON:0003134,1.80e-07,37;UBERON:0000474,1.80e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,1.47440361900905,0,0,0,0.866364470720326,0,1.34465029290355,0,2.19093027116212,0.487932798790507,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,38.5310716166467,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0,0.936480230490962,0,0.896692083310806,1.05691048779388,0.161872944368132,0.561803226808994,1.02077085627447,0.982674538494144,0,0,0,0.910161361938026,0,0.168336113954066,0.125118519871964,2.49357703935765,0,0,0,0,0.717558542755448,0,0.423863802319124,4.20127534518163,0.618315175430633,0.515281080091258,0,0.337552664482532,0,0,0.184099797284599,0,1.42003837006646,0.10075209822764,0,0,0,1.14721838155602,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.806026704325635,0.581267877027924,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0.1466765716419,1.03417372606222,0,1.690605505112,0.26593811658487,0,0,0,0,0.142977993658148,0,0,1.62868092146868,0,0,3.91871190177462,1.74306691720059,0.399891964728228,0,0,0,0,0,1.42636905040718,0.868687840005475,1.64381058040307,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.462629081407967,0.532685175939381,1.56041596426237,6.23105315020345,0.232420756919918,0,0,0,0.68888668898764,2.54927635209404,1.31124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,1.16004861950546,6.77813915304435,1.84204409671355,2.20538515975249,3.22260734604821,0.290033387828457,2.81247870473133,0.178064071293475,0.330569830721956,0,9.95379157457756,0.30347334256665,0,1.88887408098384,2.7881490806424,0.616067160352178,0,4.34966496037536,0,0,0,0,0,0,0,1.59101623962968,0,0.179872457583315,0.274537029736055,0.353437207037059,0,0,0,0,0.243713489631284,0,0.272999822815972,0,0,1.65409603063837,0,0,0,0.655894752046633,0,0,0.281695602532241,0,0,0,14.8999646909651,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.78627431598495,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.138674673013139,0,1.07791637155815,3.04707223031409,0,0,0,0,0,0,0,0,0,0.794858446811959,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0.135904206073614,0,0,4.33425884852278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26720403823288,0,0,0,0,0,5.97299561929084,0.864221491201268,10.1242081633917,0,0,1.02232813071253,0,0,0,0,0,0,0,0,0,0,0,0,0,31.2787216307389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08956724041624,0.233713309847224,7.21247619953397,0.189403005275089,0,1.77962244319307,0.915360273587694,0.604923695052956,0.15543720058278,1.33069634990671,3.98241917909256,7.19684979461767,0.310525913752519,0.829412415681711,0.265841714557995,0,1.6528336989694,1.90402606084398,0.813741466409323,2.18218391043071,1.39633724155235,2.32016879939247,0,0,0.343395705182793,0,0,0,0,0,0,0,0,2.68633261622231,0,0,0,0,0.844712203265363,0,0,0,0,0.194860308839388,0,0,0,0.245772908753719,0,0,0,0,0,0,0,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,5.64631794745107,0.240724100067505,0,0,0,0,0,0,0,0,0,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784923038064294,0,0,0,0,0,0,0,1.70946864083046,1.06727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:43341772..43341787,+ | |||
}} |
Revision as of 00:54, 22 January 2014
Short description: | p@chr4:43341772..43341787, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:43341772..43341787, + |
Coexpression cluster: | C1401_Smooth_Fibroblast_leiomyoma_malignant_Small_Skeletal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.12e-17 | 9 |
muscle precursor cell | 1.37e-12 | 58 |
myoblast | 1.37e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.37e-12 | 58 |
muscle cell | 2.53e-10 | 55 |
electrically responsive cell | 5.67e-09 | 61 |
electrically active cell | 5.67e-09 | 61 |
aortic smooth muscle cell | 2.42e-08 | 10 |
skeletal muscle myoblast | 1.06e-07 | 4 |
mesenchymal stem cell of adipose | 5.45e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.13e-13 | 83 |
somite | 3.28e-12 | 71 |
presomitic mesoderm | 3.28e-12 | 71 |
presumptive segmental plate | 3.28e-12 | 71 |
dermomyotome | 3.28e-12 | 71 |
trunk paraxial mesoderm | 3.28e-12 | 71 |
paraxial mesoderm | 5.62e-12 | 72 |
presumptive paraxial mesoderm | 5.62e-12 | 72 |
dense mesenchyme tissue | 9.46e-12 | 73 |
skeletal muscle tissue | 1.63e-11 | 62 |
striated muscle tissue | 1.63e-11 | 62 |
myotome | 1.63e-11 | 62 |
muscle tissue | 4.97e-11 | 64 |
musculature | 4.97e-11 | 64 |
musculature of body | 4.97e-11 | 64 |
epithelial vesicle | 1.04e-10 | 78 |
blood vessel smooth muscle | 2.42e-08 | 10 |
arterial system smooth muscle | 2.42e-08 | 10 |
artery smooth muscle tissue | 2.42e-08 | 10 |
aorta smooth muscle tissue | 2.42e-08 | 10 |
trunk mesenchyme | 9.82e-08 | 122 |
female reproductive organ | 1.80e-07 | 37 |
female reproductive system | 1.80e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.50e-11 | 14 |
female reproductive organ cancer | 7.64e-07 | 27 |