FFCP PHASE1:Hg19::chr3:19988808..19988853,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5868 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9783 | |||
|TSSclassifier=strong | |||
|UniProt=F8WCY6 | |||
|association_with_transcript=-17bp_to_ENST00000412966_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_4_at_RAB5A_5end | |||
|id=chr3:19988808..19988853,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.14e-32!76;CL:0000557!1.54e-28!71;CL:0002009!3.28e-28!65;CL:0002194!6.18e-27!63;CL:0000576!6.18e-27!63;CL:0000040!6.18e-27!63;CL:0000559!6.18e-27!63;CL:0000839!4.51e-26!70;CL:0002057!3.07e-24!42;CL:0000763!5.27e-22!112;CL:0000049!5.27e-22!112;CL:0000860!9.79e-22!45;CL:0002320!3.00e-11!365;CL:0000048!3.07e-11!430;CL:0000134!4.09e-11!358;CL:0000723!1.13e-10!436;CL:0000034!1.14e-10!444;CL:0000738!2.40e-08!140;CL:0000219!9.93e-08!390;CL:0002371!8.53e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.45e-20;33!CL:0002057;5.45e-20;33!CL:0000473;7.12e-19;39!CL:0000234;7.12e-19;39!CL:0000576;3.21e-16;48!CL:0000766;1.44e-14;69!CL:0000763;2.15e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.65e-34,72;CL:0000557,3.24e-30,67;CL:0002009,4.97e-30,61;CL:0002194,9.88e-29,59;CL:0000576,9.88e-29,59;CL:0000040,9.88e-29,59;CL:0000559,9.88e-29,59;CL:0000839,1.25e-27,66;CL:0000473,1.16e-26,48;CL:0000234,1.16e-26,48;CL:0000860,3.07e-24,42;CL:0002057,3.07e-24,42;CL:0000763,8.08e-23,108;CL:0000049,8.08e-23,108;CL:0002320,9.54e-12,361;CL:0000048,9.66e-12,427;CL:0000134,1.30e-11,354;CL:0000723,3.67e-11,433;CL:0000034,3.75e-11,441;CL:0000738,1.35e-08,136;CL:0000219,4.10e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;6.05e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.18e-24!80;UBERON:0004765!5.55e-24!101;UBERON:0001434!5.55e-24!101;UBERON:0002390!7.37e-22!102;UBERON:0003061!7.37e-22!102;UBERON:0001474!1.95e-21!86;UBERON:0002193!6.28e-20!112;UBERON:0002204!1.51e-18!167;UBERON:0002405!2.58e-11!115;UBERON:0002384!9.02e-11!375;UBERON:0003081!1.09e-10!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.16e-26,76;UBERON:0001434,3.79e-25,100;UBERON:0004765,2.94e-24,90;UBERON:0002390,9.64e-23,98;UBERON:0003061,9.64e-23,98;UBERON:0001474,1.80e-22,82;UBERON:0002193,1.17e-20,108;UBERON:0002405,1.12e-19,93;UBERON:0002204,2.65e-19,167;UBERON:0003081,5.95e-12,203;UBERON:0002384,3.00e-11,371;UBERON:0000926,7.39e-11,315;UBERON:0004120,7.39e-11,315;UBERON:0006603,7.39e-11,315 | |||
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| |||
|short_description=p4@RAB5A | |||
}} |
Revision as of 17:48, 21 January 2014
Short description: | p4@RAB5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAB5A_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | -17bp_to_ENST00000412966_5end |
EntrezGene: | RAB5A |
HGNC: | 9783 |
UniProt: | F8WCY6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.65e-34 | 72 |
granulocyte monocyte progenitor cell | 3.24e-30 | 67 |
macrophage dendritic cell progenitor | 4.97e-30 | 61 |
monopoietic cell | 9.88e-29 | 59 |
monocyte | 9.88e-29 | 59 |
monoblast | 9.88e-29 | 59 |
promonocyte | 9.88e-29 | 59 |
myeloid lineage restricted progenitor cell | 1.25e-27 | 66 |
defensive cell | 1.16e-26 | 48 |
phagocyte | 1.16e-26 | 48 |
classical monocyte | 3.07e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.07e-24 | 42 |
myeloid cell | 8.08e-23 | 108 |
common myeloid progenitor | 8.08e-23 | 108 |
connective tissue cell | 9.54e-12 | 361 |
multi fate stem cell | 9.66e-12 | 427 |
mesenchymal cell | 1.30e-11 | 354 |
somatic stem cell | 3.67e-11 | 433 |
stem cell | 3.75e-11 | 441 |
leukocyte | 1.35e-08 | 136 |
motile cell | 4.10e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.16e-26 | 76 |
skeletal system | 3.79e-25 | 100 |
skeletal element | 2.94e-24 | 90 |
hematopoietic system | 9.64e-23 | 98 |
blood island | 9.64e-23 | 98 |
bone element | 1.80e-22 | 82 |
hemolymphoid system | 1.17e-20 | 108 |
immune system | 1.12e-19 | 93 |
musculoskeletal system | 2.65e-19 | 167 |
lateral plate mesoderm | 5.95e-12 | 203 |
connective tissue | 3.00e-11 | 371 |
mesoderm | 7.39e-11 | 315 |
mesoderm-derived structure | 7.39e-11 | 315 |
presumptive mesoderm | 7.39e-11 | 315 |