FFCP PHASE1:Hg19::chr3:19988736..19988747,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5868 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9783 | |||
|TSSclassifier=strong | |||
|UniProt=C9J3X8 | |||
|association_with_transcript=0bp_to_ENST00000443878_5end | |||
|description=CAGE_peak_6_at_RAB5A_5end | |||
|id=chr3:19988736..19988747,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.34e-09!42;CL:0000860!8.62e-09!45;CL:0000766!1.07e-08!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.00e-13;33!CL:0002057;3.00e-13;33!CL:0000473;7.02e-09;39!CL:0000234;7.02e-09;39!CL:0000094;9.26e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.89e-13,42;CL:0002057,4.89e-13,42;CL:0000766,2.75e-12,72;CL:0000473,2.95e-10,48;CL:0000234,2.95e-10,48;CL:0000738,6.37e-09,136;CL:0000839,8.26e-09,66;CL:0000557,1.38e-08,67;CL:0002009,4.01e-08,61;CL:0002194,7.36e-08,59;CL:0000576,7.36e-08,59;CL:0000040,7.36e-08,59;CL:0000559,7.36e-08,59;CL:0000763,1.46e-07,108;CL:0000049,1.46e-07,108;CL:0002031,5.31e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;1.27e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.54e-16!115;UBERON:0002390!9.10e-08!102;UBERON:0003061!9.10e-08!102;UBERON:0001049!1.34e-07!57;UBERON:0005068!1.34e-07!57;UBERON:0006241!1.34e-07!57;UBERON:0007135!1.34e-07!57;UBERON:0002193!7.03e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;5.20e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.07e-13,114;UBERON:0002390,2.40e-11,98;UBERON:0003061,2.40e-11,98;UBERON:0001049,3.90e-09,56;UBERON:0005068,3.90e-09,56;UBERON:0006241,3.90e-09,56;UBERON:0007135,3.90e-09,56;UBERON:0002193,5.02e-09,108;UBERON:0000073,1.94e-08,53;UBERON:0002616,1.94e-08,53;UBERON:0002371,2.11e-08,76;UBERON:0001474,3.93e-08,82;UBERON:0002780,1.68e-07,41;UBERON:0001890,1.68e-07,41;UBERON:0003080,1.68e-07,41;UBERON:0006240,1.68e-07,41;UBERON:0003528,2.87e-07,34;UBERON:0002020,2.87e-07,34 | |||
|phase1_expression=1.2717486548939,0.428201047781966,0.422863212287913,2.00146596706261,0.893922188854576,0,2.53299878168311,0,0.783556884599516,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0.331397375727916,0,0.602694528023977,0.730310090387373,0.487932798790507,0,0.612002073732759,0,0.286235987131057,1.36874425072884,0.376627918784408,0.305653622991805,0.656804715599566,0.393553906568396,0.786728553697808,2.30297638858328,1.23852898652861,0.919421224478927,0.90361775633475,0,0.0774672005803016,0.142169232487422,0.293600439334847,0.553995408531877,2.60707781711184,2.60413044859022,0.895661896959697,0.32389366601898,0,3.34415949192999,0.755751887377619,2.42584061187816,2.09186133215116,2.87817521615278,3.09706370895104,5.46615545412086,0.768482119587302,1.89185783910868,3.10271112662957,1.93645405075148,4.06279459783025,2.25890807451126,0.818718450173537,3.37085226667627,5.20342617030534,0.641858054152187,4.47535988059329,1.64925650093358,0.797854630486527,0.852449501065388,6.38460324982885,3.40431134814684,1.86846674698672,3.76872997885115,2.60741459210101,1.95469960234605,3.63239701580021,3.31449872388808,2.84816148696796,0,0.212604299965044,0.209658645508376,0.22465726229299,0.300353785683013,0.803627933485401,0.285012743741249,0.39783335439818,0,0,0,0,0.426730222566507,0,0,0.661044872784862,0,1.1384259382189,0,1.14681968437569,1.32171328579026,4.48406850385229,0.790152254325231,1.96709770113833,1.96505381374582,2.2616164889946,0.668745981562712,1.62961133316795,2.36723902867367,0,0.779873198196215,0.883817722424512,1.32920336750173,0.541607727530031,0.512365278902701,1.30059347559878,1.15106533222573,1.10540007114339,0.579606171470105,0.444859689486181,0.535081656179426,0,0.906474741580529,0.766440987203842,1.03088233644789,0.506039384039006,0.318565414324097,0,0,0.301150238155546,0.255973222308837,0,0.236777252044017,0,1.81446068902259,5.08136371988664,3.33096128930438,0,0.670700859703636,0.895037932904712,0.722878304769133,0.50133791063589,1.30361867064741,0.795285947051099,0.973269740605272,0.472674085820339,0.886917589850256,0.790513071238134,0.785874452986276,0,0.370784442784429,1.29818957461873,0.696518949197069,1.46253756570752,0.715471872916026,0.571994910780128,0.74291500265913,0.198762407366705,0,0.347140501607594,0.56530794192401,0.419499436209906,0,0.626984899610432,0.775250277507987,0.35576626268671,0.66944122552934,0.402829317109147,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,1.31780417436063,7.75560528296651,0,2.48485975847659,0.633152558322899,0.264818361626438,0,0,1.12135520028461,0,1.97334038733728,1.55605517699883,0.942974704487816,0.163461903113459,0.302714855289863,1.15235184896,0.234321431833797,0.624320153660641,0,0.747243402759005,1.40921398372518,0.323745888736263,0.421352420106746,1.02077085627447,1.22834317311768,0.619954687054593,0,0.494533858557114,0.910161361938026,0,0.505008341862199,0.625592599359821,0.277064115484183,0,0,0.45071417671979,0.567160915800105,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.824420233907511,0.772921620136887,0.18611685633159,0.675105328965065,0.779496041289589,0.757301322732344,1.10459878370759,0,1.42003837006646,0.201504196455281,0,0.57978255948989,0,0.573609190778008,0.487894824518382,0.265059536642971,0.813357600086629,0.518305275076852,0.756962552626885,0.72995471815166,0,0.643240938192885,2.76269842704961,0.464367928031979,0,0.709840800239063,0.674338760312407,0.482022059766964,0.220587945464788,0.217879444092406,0.71181185733329,0.269662616320329,0.196221465125346,1.15424147083917,0,0,0,0,0,0,0,0.441463099414651,0.614942192715568,1.02940686179115,0.98775256867763,1.1240175325762,0.703702806881416,0.185176890317059,0,0,0,0.463721619900307,0.469634776943287,0.288732895522148,0,0.190254152234598,1.58040879591855,0.858486162094873,0.246217006087397,0,0.743155811443641,0,0.839910640994298,0.992425680696705,0.806026704325635,0.581267877027924,0.383382679165211,1.47798971368783,1.58487181223807,0.621984346622316,1.29707958075265,0.75745460055828,0.571481048629521,0.381988425558278,0,1.71072446022705,0.205654985406647,0.300343057843917,1.42913216315289,0.112131084345361,0.87192013766656,0.4400297149257,0.775630294546667,0,2.535908257668,0.797814349754612,1.04007436911366,0.771622122786426,1.41849132023278,0.266422179016099,0.857867961948885,1.08524321078289,0,1.30294473717494,0.355391948742546,0,0,0,0.899756920638513,0,0,0,0.479249710983165,0,0,1.15825045334063,0.205476322550383,0.358121926479791,0.224170287987055,1.97030760201927,2.58753089831421,3.85029108839245,1.01637849688985,1.30139853857622,0.773288812777695,0.502548796003046,0.637938751653163,5.99205619157746,5.9832291840805,2.07207756718018,0.49076596687656,0.500170521059677,0.542530047399471,2.28767947683888,0.892144943985809,0.473107245101804,0.819989904948992,0.902838299183157,0,1.03473071292505,1.99267679560631,0.553107505625109,0.955719759148911,0,0.343143423810856,0.413536052245775,1.72571360654893,2.77491650288955,0.606255142892519,0,0.30239029332968,0.496215615637554,0.153461973288062,0.841980283299221,0.768834895534206,0.511707249066704,2.41280881715411,0,1.07946785661859,1.42049380250502,0.657017248110473,0,0.348631135379878,0.846016147141356,1.00253235151642,0.276242966807689,0.34444334449382,0.182091168006717,0,0,0.462092022626489,0,0,0.527758144464379,0,0.510281115829547,0.647747748306418,0,0.270946437543853,1.00337954770971,0.764628819135115,0.831076008928724,0.223874754722178,0.877039506583738,1.8300481571743,0.256450125116389,0.328014645699706,0,1.13345112812495,0.366277859273374,0.495056999523528,0.574265537996172,0,0,0.580024309752732,0.770243085573222,0.767518373630648,0.413509717453592,0.214840489736547,0.145016693914229,0.852266274161009,0.534192213880424,0.495854746082934,1.92190067365106,0.765676274967505,2.023155617111,0,0.31481234683064,0,0.616067160352178,0.532306030317022,0,0.9266210955196,1.14499909393593,0.372158369359667,0,0.762520775695299,0,0.855877976067841,0,1.56989728039846,0.359744915166629,1.09814811894422,0.942499218765491,0.404364963146632,1.58510321173008,1.26377536871694,0,0.243713489631284,2.11300293513511,0.409499734223957,0.141405431953713,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0.608731130888112,0.6196469961995,0.563391205064483,0.143411352204052,0.491245205065606,0.35667105148125,0.354761064070598,1.26664581178598,0.658589785919804,0,0.349934720244983,0.192444225451024,0,0,0.753150406214233,0.43050537267123,0,0,0.459446800413919,4.56702848308952,3.0585488285695,3.98753031021914,1.19115887728894,0.411362273086194,4.53931317834902,4.32025149790492,4.75875105776562,0.213648142254946,0,1.22520107990516,0.185803175125719,0.432807638929335,0.284567373393656,0.318852545457645,0.399158742865633,0.383010740264733,0.211673582723883,0,0,0.456469358066384,0.156679895773023,0,0,0.321176150207399,0,0,0,0.307240764308458,0,0.834245708559542,0.390776190804081,0.278406173895242,0,0,0.99921590399346,0,0.561421621224659,0.879049075631364,0.242721043499027,0.66866030566487,0.284136146806413,0.95497793895076,0.296964680832639,1.22864280839693,0.994147647766298,1.82870241333667,0.333926115068718,0.659215496907038,1.26675244876796,2.59022384726391,0,0,0.306806047506464,0.738508832766417,0,0.359473404589307,1.25314822272926,2.55786185113436,1.08507746200627,2.3948309234694,0,0.969332746095218,0.834912883456661,0,0.7812832832557,0.962059999958153,0.724999575434793,0.455173793141999,1.77977555204936,0.709163045303809,0,0.583209226766509,0.173624994933292,0,0.844175070377856,4.5774520895125,0.995213339381022,0.591095237907095,1.31631238292384,0.32681539055697,0.83654246567162,0.615602068030377,0.455768223388005,0.23056390438806,0.807818799687949,0.869178975376065,1.27600463892768,1.00757352742049,4.26427820814908,0,0,0.332423363800313,1.35357396370308,1.17637520590644,1.67821586975843,0.189753732724185,0.158936578980379,0,0.326465616318295,1.13082457147153,0.216388639742091,0.995261931078505,1.14994833854341,0,0.296521128680622,0.247127877893006,0.104421949505455,0.269604531922708,0,0,0,0.19566461893209,0,0.394584402849391,0,0.91821828489147,0.821425535170343,1.05226393590145,0.414752765588989,0.664653872707185,0.330991955875499,0.941798755221676,0,0.284609546029793,0.693373365065693,0.173559738335131,0.195984794828755,0.34823682632161,0.52418000472609,0.343972064943233,0.0967563312890851,0.803982487948041,0.410577285266046,1.16386819786103,0,0.677942222341597,0.548167698587004,0.596143835108969,1.26621591911757,0.586654148204409,0.240476460754601,0.85381197895741,0.599428828746391,0.144090417154106,0.343609788497747,0.171594997861965,0.288109595976299,0.372757606696298,1.41416420770077,0.67952103036807,0.523014231561666,0.305994652908965,0,0.600420288709789,1.23214841002794,0,0.429765441419957,1.05154941711726,0,0.916641696046735,2.15361907373044,0.599037001496973,0,0.669514372325618,0.53746777989381,0.720599767084807,0,0.315132729228895,0.329663433524666,0.471824806979294,0.295282444544246,1.43944664511834,3.18091875923721,1.0896272488926,0.321506296930038,0.687697182986169,1.24632101408756,0.899895566206002,2.32140586367385,1.03274246318642,0.335434687599266,1.18208560948797,0.472091293214983,1.16160370171347,0.179287339332845,0.959575986597226,0.714695326373367,0.662091970365432,0,0.542999601753713,0.864221491201268,0.653174720218818,0,0.246277562248017,0.340776043570843,0.226624183040251,0.879313402068495,0,1.68067843270016,1.98348902614035,1.02652102730598,0.704815022316672,1.81538601365081,1.25763444079733,1.24271716604159,0.992332043623902,0.197611631897944,0.121792598380896,0,0,0.2506898940227,0.919036730290385,0.327872630709804,0.314108192500469,2.65820453990096,1.83039397352945,1.502291168478,0.573409195690071,1.10929051536852,1.05563885000352,0.691743174681154,0.74988244777264,0.151649117541648,0.285465333544967,0,0.468334905806882,0,0.597019211547496,0.934853239388898,1.66441758450784,1.89403005275089,0.251567901752575,1.77962244319307,0,0.151230923763239,0.466311601748341,0.443565449968902,0.477890301491107,1.34940933649081,0.465788870628778,0.829412415681711,1.32920857278997,0,0.300515217994437,1.52322084867518,0.406870733204662,2.18218391043071,0.429642228169954,0.928067519756987,0.398095888698616,0.800055529326307,0.686791410365586,0.673498977531838,0,0.385239660814607,1.07220795687463,0.260994291965212,1.36023555307363,0.231522474323834,0.489473409012935,0.895444205407437,0.617602894321944,1.09642024789354,0.353378291891762,0.771656153083659,0,0.256241518587947,0,1.51929978088691,1.10606748921385,0,0,0.817826971279221,0.327609848846413,1.2288645437686,1.05656061679314,0.39997479170986,0.320075189082423,0.344429959321631,0,0.736423801007363,0,0,0.639471856518258,0.107824811396682,0,0,0.509197589862076,0,0.743614585554013,0.558644917973244,0.954013051960256,0.630893960010027,0.80057074828547,1.05802783107205,0.3062454773532,1.22035527683273,5.6678630530234,1.11743701340006,1.8460472781668,0,1.1756732918917,1.29180516505481,0,0.196295437002051,0,0.366857197043358,0.462102664601353,0.381382095467167,1.3807198521202,0.795664888465099,0.376051641746286,0.80682027481408,0,2.3571602503328,0.327543835020193,0.443568258651136,1.2832141077495,0.781078098613847,2.27355476151302,0.760989722326882,0.546974809018219,2.74128883428591,0.496211178389294,0,1.02209942111676,1.60710550763486,3.36283722218824,0.606965604236632,0.227662191351298,3.10458295569236,0.230467975111559,0,1.76721305739762,1.11813715056843,0.354581522651905,0.778619813244484,0.470958557103084,0.942693539496011,0,1.82631744101899,0.215927591218621,0.9555033757741,0.714765441766563,0,0.23248285073625,0.347716544605159,1.60342272946051,1.24329698497822,0.3414369541879,1.38251932362818,1.29068207646083,0.473328002922261,0.255640214277473,0.423387050190929,2.06196181689645,0.62041277132864,0,0.111855431797792,0.588901401691458,0.609589624911347,1.29485767437579,0.513314034281235,0,0.971421986118279,0.233939463462106,0.198950775161368,0.237840181555137,1.80713731262336,0.549702583727146,0.905777061400041,1.23478652972711,1.09279780251979,0,0.980593287015622,0.942706188406504,1.37415926980462,2.0793248022896,0.8453114551668,0.679708458751268,0.939839179798536,1.16024198352439,0.199882311849858,0.178553938605658,0.352894871715692,0.320965466756673,0.730336388246517,0.917458566809082,1.57673541466596,0.315543124386369,1.22384682343646,0,0.5290268405154,1.85997509083376,2.77305377178851,0.432626562123789,0.126166424835079,0.218531143927391,0.253397002022874,1.1218771271618,0,0.918948995348449,0.250707539292375,0.303114792872958,1.33982065078089,2.48750831837634,1.65492793379032,0.426467963801962,0.23806443146374,0.322944549180031,0.434523000071005,0.33639558774184,0.954707374172474,1.21270313374932,1.30630048738177,0.684466602170562,0.80822463617505,1.79305513481691,0,0.162806537221949,0.213454691755431,1.9307228228694,0.359300808426348,0,0.855690109280065,0.406896178315738,1.99727032255654,0.603821380773079,0.961705476909699 | |||
|short_description=p6@RAB5A | |||
}} |
Revision as of 17:48, 21 January 2014
Short description: | p6@RAB5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RAB5A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000443878_5end |
EntrezGene: | RAB5A |
HGNC: | 9783 |
UniProt: | C9J3X8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.89e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.89e-13 | 42 |
myeloid leukocyte | 2.75e-12 | 72 |
defensive cell | 2.95e-10 | 48 |
phagocyte | 2.95e-10 | 48 |
leukocyte | 6.37e-09 | 136 |
myeloid lineage restricted progenitor cell | 8.26e-09 | 66 |
granulocyte monocyte progenitor cell | 1.38e-08 | 67 |
macrophage dendritic cell progenitor | 4.01e-08 | 61 |
monopoietic cell | 7.36e-08 | 59 |
monocyte | 7.36e-08 | 59 |
monoblast | 7.36e-08 | 59 |
promonocyte | 7.36e-08 | 59 |
myeloid cell | 1.46e-07 | 108 |
common myeloid progenitor | 1.46e-07 | 108 |
hematopoietic lineage restricted progenitor cell | 5.31e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.07e-13 | 114 |
hematopoietic system | 2.40e-11 | 98 |
blood island | 2.40e-11 | 98 |
neural tube | 3.90e-09 | 56 |
neural rod | 3.90e-09 | 56 |
future spinal cord | 3.90e-09 | 56 |
neural keel | 3.90e-09 | 56 |
hemolymphoid system | 5.02e-09 | 108 |
regional part of nervous system | 1.94e-08 | 53 |
regional part of brain | 1.94e-08 | 53 |
bone marrow | 2.11e-08 | 76 |
bone element | 3.93e-08 | 82 |
regional part of forebrain | 1.68e-07 | 41 |
forebrain | 1.68e-07 | 41 |
anterior neural tube | 1.68e-07 | 41 |
future forebrain | 1.68e-07 | 41 |
brain grey matter | 2.87e-07 | 34 |
gray matter | 2.87e-07 | 34 |