FFCP PHASE1:Hg19::chr22:50683388..50683444,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=85378 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18127 | |||
|TSSclassifier=strong | |||
|UniProt=Q96RT7,B2RWN4 | |||
|association_with_transcript=0bp_to_ENST00000498611,NM_020461,uc003bkb.1,uc010har.1,uc010has.1,uc010hau.1_5end | |||
|coexpression_cluster_id=C2651 | |||
|description=CAGE_peak_1_at_TUBGCP6_5end | |||
|id=chr22:50683388..50683444,- | |||
|ontology_enrichment_celltype=CL:0000838!2.97e-13!52;CL:0000542!1.38e-12!53;CL:0000051!1.38e-12!53;CL:0000791!5.90e-11!18;CL:0000789!5.90e-11!18;CL:0002420!5.90e-11!18;CL:0002419!5.90e-11!18;CL:0000790!5.90e-11!18;CL:0000738!2.89e-10!140;CL:0000084!3.46e-10!25;CL:0000827!3.46e-10!25;CL:0000988!1.79e-08!182;CL:0000037!4.34e-08!172;CL:0000566!4.34e-08!172;CL:0000625!5.40e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.29e-11;18!CL:0000789;4.29e-11;18!CL:0002419;4.29e-11;18!CL:0000084;2.36e-10;25!CL:0000542;1.86e-08;53!CL:0000625;4.97e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.97e-13,52;CL:0000542,1.38e-12,53;CL:0000051,1.38e-12,53;CL:0000738,9.71e-12,136;CL:0000791,5.90e-11,18;CL:0000789,5.90e-11,18;CL:0002420,5.90e-11,18;CL:0002419,5.90e-11,18;CL:0000790,5.90e-11,18;CL:0000084,3.46e-10,25;CL:0000827,3.46e-10,25;CL:0000988,8.00e-10,177;CL:0000037,3.19e-09,168;CL:0000625,5.40e-08,11;CL:0002031,1.15e-07,120;CL:0002032,1.48e-07,161;CL:0000837,1.48e-07,161;CL:0002087,1.82e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;4.29e-11;18!CL:0000051;1.86e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.90e-25!115;UBERON:0001049!7.14e-16!57;UBERON:0005068!7.14e-16!57;UBERON:0006241!7.14e-16!57;UBERON:0007135!7.14e-16!57;UBERON:0002780!7.11e-14!41;UBERON:0001890!7.11e-14!41;UBERON:0006240!7.11e-14!41;UBERON:0002616!1.86e-13!59;UBERON:0003080!1.99e-13!42;UBERON:0000955!4.27e-12!69;UBERON:0006238!4.27e-12!69;UBERON:0001893!9.04e-12!34;UBERON:0002791!1.87e-11!33;UBERON:0002020!3.17e-11!34;UBERON:0003528!3.17e-11!34;UBERON:0001017!4.77e-11!82;UBERON:0001869!7.16e-11!32;UBERON:0005743!3.50e-10!86;UBERON:0002619!1.91e-09!22;UBERON:0002346!4.10e-09!90;UBERON:0000073!5.61e-09!94;UBERON:0001016!5.61e-09!94;UBERON:0001950!7.55e-09!20;UBERON:0003075!1.31e-08!86;UBERON:0007284!1.31e-08!86;UBERON:0000956!1.89e-08!25;UBERON:0000203!1.89e-08!25;UBERON:0003056!3.26e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.94e-10;41!UBERON:0001890;1.94e-10;41!UBERON:0001893;5.20e-10;34!UBERON:0002791;5.78e-10;32!UBERON:0000073;7.26e-10;53!UBERON:0002616;7.26e-10;53!UBERON:0001869;7.80e-10;32!UBERON:0003528;1.27e-09;34!UBERON:0002020;1.27e-09;34!UBERON:0002619;2.19e-09;22!UBERON:0001950;8.24e-09;20!UBERON:0000956;1.68e-08;25!UBERON:0000203;1.68e-08;25!UBERON:0007023;4.80e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.03e-25,114;UBERON:0001049,2.82e-16,56;UBERON:0005068,2.82e-16,56;UBERON:0006241,2.82e-16,56;UBERON:0007135,2.82e-16,56;UBERON:0000073,7.57e-16,53;UBERON:0002616,7.57e-16,53;UBERON:0002780,7.11e-14,41;UBERON:0001890,7.11e-14,41;UBERON:0003080,7.11e-14,41;UBERON:0006240,7.11e-14,41;UBERON:0000955,2.29e-12,68;UBERON:0006238,2.29e-12,68;UBERON:0001893,9.04e-12,34;UBERON:0001017,2.87e-11,81;UBERON:0003528,3.17e-11,34;UBERON:0002020,3.17e-11,34;UBERON:0002791,4.91e-11,32;UBERON:0001869,7.16e-11,32;UBERON:0002346,1.51e-10,86;UBERON:0003075,5.03e-10,82;UBERON:0007284,5.03e-10,82;UBERON:0001016,6.94e-10,89;UBERON:0002619,1.91e-09,22;UBERON:0010371,5.87e-09,104;UBERON:0001950,7.55e-09,20;UBERON:0000956,1.89e-08,25;UBERON:0000203,1.89e-08,25;UBERON:0003056,1.01e-07,61 | |||
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| |||
|short_description=p1@TUBGCP6 | |||
}} |
Revision as of 16:46, 21 January 2014
Short description: | p1@TUBGCP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TUBGCP6_5end |
Coexpression cluster: | C2651_granulocyte_CD4_CD8_Small_CD19_CD34_Natural |
Association with transcript: | 0bp_to_ENST00000498611, NM_020461, uc003bkb.1, uc010har.1, uc010has.1, uc010hau.1_5end |
EntrezGene: | TUBGCP6 |
HGNC: | 18127 |
UniProt: | Q96RT7B2RWN4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.97e-13 | 52 |
lymphocyte | 1.38e-12 | 53 |
common lymphoid progenitor | 1.38e-12 | 53 |
leukocyte | 9.71e-12 | 136 |
mature alpha-beta T cell | 5.90e-11 | 18 |
alpha-beta T cell | 5.90e-11 | 18 |
immature T cell | 5.90e-11 | 18 |
mature T cell | 5.90e-11 | 18 |
immature alpha-beta T cell | 5.90e-11 | 18 |
T cell | 3.46e-10 | 25 |
pro-T cell | 3.46e-10 | 25 |
hematopoietic cell | 8.00e-10 | 177 |
hematopoietic stem cell | 3.19e-09 | 168 |
CD8-positive, alpha-beta T cell | 5.40e-08 | 11 |
hematopoietic lineage restricted progenitor cell | 1.15e-07 | 120 |
hematopoietic oligopotent progenitor cell | 1.48e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.48e-07 | 161 |
nongranular leukocyte | 1.82e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.03e-25 | 114 |
neural tube | 2.82e-16 | 56 |
neural rod | 2.82e-16 | 56 |
future spinal cord | 2.82e-16 | 56 |
neural keel | 2.82e-16 | 56 |
regional part of nervous system | 7.57e-16 | 53 |
regional part of brain | 7.57e-16 | 53 |
regional part of forebrain | 7.11e-14 | 41 |
forebrain | 7.11e-14 | 41 |
anterior neural tube | 7.11e-14 | 41 |
future forebrain | 7.11e-14 | 41 |
brain | 2.29e-12 | 68 |
future brain | 2.29e-12 | 68 |
telencephalon | 9.04e-12 | 34 |
central nervous system | 2.87e-11 | 81 |
brain grey matter | 3.17e-11 | 34 |
gray matter | 3.17e-11 | 34 |
regional part of telencephalon | 4.91e-11 | 32 |
cerebral hemisphere | 7.16e-11 | 32 |
neurectoderm | 1.51e-10 | 86 |
neural plate | 5.03e-10 | 82 |
presumptive neural plate | 5.03e-10 | 82 |
nervous system | 6.94e-10 | 89 |
regional part of cerebral cortex | 1.91e-09 | 22 |
ecto-epithelium | 5.87e-09 | 104 |
neocortex | 7.55e-09 | 20 |
cerebral cortex | 1.89e-08 | 25 |
pallium | 1.89e-08 | 25 |
pre-chordal neural plate | 1.01e-07 | 61 |