Personal tools

Template:Known motif: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
mNo edit summary
Line 111: Line 111:
"sScrollY": "500px",
"sScrollY": "500px",
"bScrollCollapse": true,
"bScrollCollapse": true,
                "iDisplayLength": 5,
"aLengthMenu": [[5, 10, -1], [5, 10, "All"]],
"bPaginate": true,
"bPaginate": true,
"bFilter": true,
"bFilter": true,

Revision as of 15:36, 21 January 2014

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :{{{name}}}
  • db  :{{{representative_motif_db}}}
  • Id  :{{{representative_motif_id}}}
  • name  :{{{representative_motif_name}}}
  • score  :{{{score}}}
  • External refs:
EntrezGene:{{{entrez_gene_id}}}
UniProt:{{{entrez_gene_id}}}

  • Internal refs:
[[EntrezGene:{{{entrez_gene_id}}}]]


Motif matrix
{{{PWM}}}

Sub Motif Members