FFCP PHASE1:Hg19::chr21:47648451..47648462,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4047 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6708 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=213bp_to_ENST00000464357_5end | |||
|coexpression_cluster_id=C173 | |||
|description=CAGE_peak_3_at_LSS_5end | |||
|id=chr21:47648451..47648462,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002504;5.32e-14;3!CL:1000279;5.32e-14;3!CL:1000280;5.32e-14;3!CL:0002600;9.51e-11;2!CL:0002598;3.67e-10;2!CL:0000136;3.88e-09;13!CL:0002615;1.90e-07;3!CL:0002521;2.36e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,6.11e-14,3;CL:1000279,6.11e-14,3;CL:1000280,6.11e-14,3;CL:0002600,9.55e-11,2;CL:0002598,2.32e-10,2;CL:0000192,1.16e-08,43;CL:0000514,1.16e-08,43;CL:0000136,7.07e-08,15;CL:0000187,1.02e-07,55;CL:0002615,2.00e-07,3;CL:0002521,2.19e-07,3;CL:0000680,3.26e-07,58;CL:0000056,3.26e-07,58;CL:0000355,3.26e-07,58;CL:0000632,7.83e-07,3;CL:0000393,9.30e-07,61;CL:0000211,9.30e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.14e-09!347;UBERON:0000923!1.30e-09!604;UBERON:0005291!1.30e-09!604;UBERON:0006598!1.30e-09!604;UBERON:0002532!1.30e-09!604;UBERON:0002050!1.68e-09!605;UBERON:0005423!1.68e-09!605;UBERON:0000062!1.94e-09!511;UBERON:0000922!2.12e-09!612;UBERON:0005256!2.15e-09!143;UBERON:0001737!9.91e-09!9;UBERON:0000480!1.51e-08!626;UBERON:0000467!2.59e-08!625;UBERON:0000475!4.25e-08!365;UBERON:0002100!8.40e-08!216;UBERON:0000119!8.60e-08!312;UBERON:0000483!1.49e-07!309;UBERON:0000468!2.16e-07!659;UBERON:0000064!4.04e-07!219;UBERON:0000914!4.95e-07!83;UBERON:0002329!4.95e-07!83;UBERON:0003077!4.95e-07!83;UBERON:0003059!4.95e-07!83;UBERON:0007282!4.95e-07!83;UBERON:0009618!4.95e-07!83;UBERON:0007285!4.95e-07!83;UBERON:0001048!7.29e-07!168;UBERON:0003104!8.72e-07!238;UBERON:0009142!8.72e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.41e-17;9!UBERON:0001557;4.41e-17;9!UBERON:0000072;2.80e-11;37!UBERON:0000065;1.61e-08;44!UBERON:0002107;6.10e-08;19!UBERON:0006925;6.10e-08;19!UBERON:0007196;1.62e-07;15!UBERON:0001558;1.62e-07;15!UBERON:0002190;2.36e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.45e-17,9;UBERON:0004119,2.25e-10,160;UBERON:0000925,2.25e-10,160;UBERON:0006595,2.25e-10,160;UBERON:0001041,1.54e-09,87;UBERON:0000072,2.45e-09,47;UBERON:0004921,3.81e-09,118;UBERON:0005256,7.40e-09,122;UBERON:0001007,1.46e-08,145;UBERON:0001555,1.46e-08,145;UBERON:0007026,1.46e-08,145;UBERON:0002107,4.71e-08,19;UBERON:0006925,4.71e-08,19;UBERON:0008836,4.71e-08,19;UBERON:0008947,6.47e-08,38;UBERON:0003258,6.47e-08,38;UBERON:0000065,7.43e-08,54;UBERON:0001557,1.04e-07,19;UBERON:0007196,1.58e-07,15;UBERON:0001558,1.58e-07,15;UBERON:0001004,2.13e-07,74;UBERON:0002190,2.19e-07,3;UBERON:0007503,6.39e-07,78;UBERON:0009569,6.75e-07,112;UBERON:0008835,7.20e-07,22;UBERON:0003894,7.20e-07,22 | |||
|phase1_expression=0,23.9792586757901,0.845726424575827,3.00219895059391,7.15137751083661,0,7.59899634504932,0,2.61185628199839,0.245733936501509,0.697801167972428,0.436882744260345,0.791300934685361,0.247532705920093,0,0,0.602694528023977,0,0,0.369363174230364,0,0.313454721478088,0,0.410623275218653,0.125542639594803,0.0764134057479513,0,0,0,0,0,0,0.90361775633475,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0.645484683583826,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.383587685530591,0,0,0.144846518960824,0,0,0.567208902984407,0.221729397462564,0.702678285545008,0,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0.573673241497627,0,0.560677600142307,0,0,0.622422070799533,0.538842688278752,0.163461903113459,0.151357427644931,0.576175924479999,0.234321431833797,0.312160076830321,0,0,0,0.323745888736263,0.140450806702248,0.408308342509787,0.859840221182376,0.103325781175765,1.18800285728205,0,0.910161361938026,0.718618141816238,0.505008341862199,0.250237039743928,0,0.877955241761676,0,0.150238058906597,0,0,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0,0,0,0,0.57978255948989,0.545492241181669,1.14721838155602,0,0,0.116193942869518,0.207322110030741,0,0.36497735907583,1.56449532329816,0.643240938192885,0,0,2.16563844500876,0.591534000199219,1.01150814046861,1.68707720918437,1.10293972732394,0.435758888184812,2.13543557199987,0.539325232640658,1.17732879075208,1.53898862778556,0,1.40241773803446,1.6462960453256,1.47008711385542,2.53510069643662,0,0,0,0,0.171567810298526,2.63400684980701,1.1240175325762,0.502644862058154,0.185176890317059,0,0,0,0.231860809950154,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0.148631162288728,2.81201501960331,0.503946384596579,0.708875486211932,0.0895585227028483,0.290633938513962,0,0,0,0.207328115540772,0,0.12624243342638,0.317489471460845,0,0,0,0.102827492703324,0,0.571652865261156,0.336393253036082,0,0.07333828582095,0,0,0,0.531876233169741,2.08014873822732,0.771622122786426,0,0,1.85871391755592,0,0,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0.112085143993527,0,0.215627574859517,0,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0.178428988797162,0,0,0,0,0,0,0,0.521301686808497,2.54541504701563,0.343143423810856,0,0,0,0,1.66435439510497,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0,0.40101294060657,0,0.114814448164607,0.182091168006717,0.786746489756545,0,0.231046011313244,0,0,0.105551628892876,0,0.170093705276516,0,0,0,1.00337954770971,0,0,0.223874754722178,0,0,0.512900250232778,0.984043937099117,0,0.206082023295445,0.183138929636687,0.247528499761764,0,0.650060246036521,0,0,0,0.15350367472613,0.137836572484531,0.966782203814463,1.0151168573996,0.170453254832202,0.356128142586949,0,0.192190067365106,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0.37064843820784,0,1.116475108079,0.632758849437452,1.33441135746677,3.32667128704734,1.71175595213568,0,0,1.07923474549989,2.74537029736055,1.41374882814824,0.202182481573316,0,0.421258456238981,1.95053495635836,0.243713489631284,0,0.136499911407986,0.848432591722276,0,0,0.66343897524122,0,6.36653087693356,3.27947376023316,0,0,0,0,0.196498082026242,0,0.709522128141196,0,0,0.379473173765715,0,0.288666338176536,0,1.08890984861323,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0.635020748171649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0.20453736500431,0.369254416383208,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.0927680981618513,1.99613798001194,0.520855522170466,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0.210998064528027,0,0.141353071433941,0,0,0.176915129006678,0,0,0,0,0.269604531922708,0,0,0,0,0.242780379534093,0,0,0,0.442306057399416,0.300646838828985,0.207376382794494,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0,0,0,0.353024506766001,0,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0.788662062837943,0.279282401272254,0,0,0,0,0,0,0,0,0.709048640765013,0.329663433524666,0.337017719270924,0,0,0,0,0.160753148465019,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0,0,0,2.1440859791201,0,0,0.542999601753713,0,0,0,0,0,0.226624183040251,0,5.30027555648885,0,0.26446520348538,0,0,0,0,0.414239055347196,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0.332787154610557,0.18628920882415,0,0,0,0,0,0,0.28984205722165,0,0.233713309847224,0,0.378806010550178,0.251567901752575,0,0,0.453692771289717,0.15543720058278,0,0.318593534327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| |||
|short_description=p3@LSS | |||
}} |
Revision as of 14:25, 21 January 2014
Short description: | p3@LSS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LSS_5end |
Coexpression cluster: | C173_Adipocyte_mature_skin_left_Hepatocyte_Osteoblast_adipose |
Association with transcript: | 213bp_to_ENST00000464357_5end |
EntrezGene: | LSS |
HGNC: | 6708 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 6.11e-14 | 3 |
smooth muscle cell of large intestine | 6.11e-14 | 3 |
smooth muscle cell of colon | 6.11e-14 | 3 |
smooth muscle cell of trachea | 9.55e-11 | 2 |
bronchial smooth muscle cell | 2.32e-10 | 2 |
smooth muscle cell | 1.16e-08 | 43 |
smooth muscle myoblast | 1.16e-08 | 43 |
fat cell | 7.07e-08 | 15 |
muscle cell | 1.02e-07 | 55 |
adipocyte of omentum tissue | 2.00e-07 | 3 |
subcutaneous fat cell | 2.19e-07 | 3 |
muscle precursor cell | 3.26e-07 | 58 |
myoblast | 3.26e-07 | 58 |
multi-potent skeletal muscle stem cell | 3.26e-07 | 58 |
hepatic stellate cell | 7.83e-07 | 3 |
electrically responsive cell | 9.30e-07 | 61 |
electrically active cell | 9.30e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.45e-17 | 9 |
endoderm-derived structure | 2.25e-10 | 160 |
endoderm | 2.25e-10 | 160 |
presumptive endoderm | 2.25e-10 | 160 |
foregut | 1.54e-09 | 87 |
segment of respiratory tract | 2.45e-09 | 47 |
subdivision of digestive tract | 3.81e-09 | 118 |
trunk mesenchyme | 7.40e-09 | 122 |
digestive system | 1.46e-08 | 145 |
digestive tract | 1.46e-08 | 145 |
primitive gut | 1.46e-08 | 145 |
liver | 4.71e-08 | 19 |
digestive gland | 4.71e-08 | 19 |
liver bud | 4.71e-08 | 19 |
respiratory primordium | 6.47e-08 | 38 |
endoderm of foregut | 6.47e-08 | 38 |
respiratory tract | 7.43e-08 | 54 |
upper respiratory tract | 1.04e-07 | 19 |
tracheobronchial tree | 1.58e-07 | 15 |
lower respiratory tract | 1.58e-07 | 15 |
respiratory system | 2.13e-07 | 74 |
subcutaneous adipose tissue | 2.19e-07 | 3 |
epithelial vesicle | 6.39e-07 | 78 |
subdivision of trunk | 6.75e-07 | 112 |
hepatic diverticulum | 7.20e-07 | 22 |
liver primordium | 7.20e-07 | 22 |