FFCP PHASE1:Hg19::chr2:239197399..239197467,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8864 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8846 | |||
|TSSclassifier=strong | |||
|UniProt=O15055 | |||
|association_with_transcript=-149bp_to_ENST00000254657_5end | |||
|description=CAGE_peak_1_at_PER2_5end | |||
|id=chr2:239197399..239197467,- | |||
|ontology_enrichment_celltype=CL:0000037!1.42e-22!172;CL:0000566!1.42e-22!172;CL:0002032!1.42e-20!165;CL:0000837!1.42e-20!165;CL:0000988!3.98e-20!182;CL:0000738!2.65e-18!140;CL:0002087!1.28e-15!119;CL:0002031!1.67e-15!124;CL:0000763!9.16e-12!112;CL:0000049!9.16e-12!112;CL:0002057!1.91e-11!42;CL:0000860!3.17e-10!45;CL:0000542!5.03e-09!53;CL:0000051!5.03e-09!53;CL:0000766!6.06e-09!76;CL:0000838!9.42e-09!52;CL:0000557!2.62e-08!71;CL:0002009!2.58e-07!65;CL:0000839!7.37e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.11e-08;33!CL:0002057;3.11e-08;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.97e-24,168;CL:0000988,9.49e-22,177;CL:0002032,1.10e-21,161;CL:0000837,1.10e-21,161;CL:0000738,1.86e-19,136;CL:0002087,8.28e-17,115;CL:0002031,1.28e-16,120;CL:0000763,9.68e-13,108;CL:0000049,9.68e-13,108;CL:0000860,1.90e-11,42;CL:0002057,1.90e-11,42;CL:0000766,5.47e-10,72;CL:0000557,2.41e-09,67;CL:0000542,5.02e-09,53;CL:0000051,5.02e-09,53;CL:0000838,9.39e-09,52;CL:0000473,1.42e-08,48;CL:0000234,1.42e-08,48;CL:0002009,2.43e-08,61;CL:0000839,9.36e-08,66;CL:0002194,1.82e-07,59;CL:0000576,1.82e-07,59;CL:0000040,1.82e-07,59;CL:0000559,1.82e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;1.55e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.28e-22!115;UBERON:0002390!8.69e-08!102;UBERON:0003061!8.69e-08!102;UBERON:0001049!2.00e-07!57;UBERON:0005068!2.00e-07!57;UBERON:0006241!2.00e-07!57;UBERON:0007135!2.00e-07!57;UBERON:0001474!3.68e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.84e-22,114;UBERON:0002390,1.52e-08,98;UBERON:0003061,1.52e-08,98;UBERON:0001474,6.15e-08,82;UBERON:0001049,1.62e-07,56;UBERON:0005068,1.62e-07,56;UBERON:0006241,1.62e-07,56;UBERON:0007135,1.62e-07,56;UBERON:0002371,2.20e-07,76;UBERON:0000073,2.79e-07,53;UBERON:0002616,2.79e-07,53 | |||
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| |||
|short_description=p1@PER2 | |||
}} |
Revision as of 09:30, 21 January 2014
Short description: | p1@PER2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PER2_5end |
Coexpression cluster: | NA |
Association with transcript: | -149bp_to_ENST00000254657_5end |
EntrezGene: | PER2 |
HGNC: | 8846 |
UniProt: | O15055 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.97e-24 | 168 |
hematopoietic cell | 9.49e-22 | 177 |
hematopoietic oligopotent progenitor cell | 1.10e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-21 | 161 |
leukocyte | 1.86e-19 | 136 |
nongranular leukocyte | 8.28e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 1.28e-16 | 120 |
myeloid cell | 9.68e-13 | 108 |
common myeloid progenitor | 9.68e-13 | 108 |
classical monocyte | 1.90e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.90e-11 | 42 |
myeloid leukocyte | 5.47e-10 | 72 |
granulocyte monocyte progenitor cell | 2.41e-09 | 67 |
lymphocyte | 5.02e-09 | 53 |
common lymphoid progenitor | 5.02e-09 | 53 |
lymphoid lineage restricted progenitor cell | 9.39e-09 | 52 |
defensive cell | 1.42e-08 | 48 |
phagocyte | 1.42e-08 | 48 |
macrophage dendritic cell progenitor | 2.43e-08 | 61 |
myeloid lineage restricted progenitor cell | 9.36e-08 | 66 |
monopoietic cell | 1.82e-07 | 59 |
monocyte | 1.82e-07 | 59 |
monoblast | 1.82e-07 | 59 |
promonocyte | 1.82e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.84e-22 | 114 |
hematopoietic system | 1.52e-08 | 98 |
blood island | 1.52e-08 | 98 |
bone element | 6.15e-08 | 82 |
neural tube | 1.62e-07 | 56 |
neural rod | 1.62e-07 | 56 |
future spinal cord | 1.62e-07 | 56 |
neural keel | 1.62e-07 | 56 |
bone marrow | 2.20e-07 | 76 |
regional part of nervous system | 2.79e-07 | 53 |
regional part of brain | 2.79e-07 | 53 |