FFCP PHASE1:Hg19::chr2:234184368..234184381,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=677775 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=32561 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000516201,NR_003008,uc002vue.1_5end | |||
|coexpression_cluster_id=C673 | |||
|description=CAGE_peak_1_at_SCARNA5_5end | |||
|id=chr2:234184368..234184381,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.25e-09!18;CL:0000789!3.25e-09!18;CL:0002420!3.25e-09!18;CL:0002419!3.25e-09!18;CL:0000790!3.25e-09!18;CL:0000838!4.46e-08!52;CL:0000542!7.60e-08!53;CL:0000051!7.60e-08!53;CL:0000084!2.70e-07!25;CL:0000827!2.70e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.52e-12;18!CL:0000789;3.52e-12;18!CL:0002419;3.52e-12;18!CL:0000625;5.02e-09;11!CL:0000084;4.54e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.39e-12,18;CL:0000789,2.39e-12,18;CL:0002420,2.39e-12,18;CL:0002419,2.39e-12,18;CL:0000790,2.39e-12,18;CL:0000838,1.26e-09,52;CL:0000542,2.91e-09,53;CL:0000051,2.91e-09,53;CL:0000625,5.49e-09,11;CL:0000084,3.30e-08,25;CL:0000827,3.30e-08,25;CL:0002087,8.92e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;3.52e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.09e-22!115;UBERON:0001049!7.55e-11!57;UBERON:0005068!7.55e-11!57;UBERON:0006241!7.55e-11!57;UBERON:0007135!7.55e-11!57;UBERON:0003080!6.40e-09!42;UBERON:0002780!1.46e-08!41;UBERON:0001890!1.46e-08!41;UBERON:0006240!1.46e-08!41;UBERON:0002020!2.17e-08!34;UBERON:0003528!2.17e-08!34;UBERON:0002616!8.31e-08!59;UBERON:0002791!3.56e-07!33;UBERON:0001893!8.83e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;5.94e-10;34!UBERON:0002020;5.94e-10;34!UBERON:0002791;8.86e-10;32!UBERON:0002619;6.88e-09;22!UBERON:0001869;7.65e-09;32!UBERON:0002780;3.46e-08;41!UBERON:0001890;3.46e-08;41!UBERON:0001893;4.94e-08;34!UBERON:0000178;7.43e-08;15!UBERON:0000179;7.43e-08;15!UBERON:0000463;7.43e-08;15!UBERON:0001950;1.71e-07;20!UBERON:0000956;3.10e-07;25!UBERON:0000203;3.10e-07;25!UBERON:0000125;7.35e-07;9!UBERON:0002308;7.35e-07;9!UBERON:0000073;9.67e-07;53!UBERON:0002616;9.67e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.64e-25,114;UBERON:0001049,2.25e-13,56;UBERON:0005068,2.25e-13,56;UBERON:0006241,2.25e-13,56;UBERON:0007135,2.25e-13,56;UBERON:0003528,4.15e-12,34;UBERON:0002020,4.15e-12,34;UBERON:0000073,1.08e-11,53;UBERON:0002616,1.08e-11,53;UBERON:0002791,8.47e-11,32;UBERON:0002780,9.51e-11,41;UBERON:0001890,9.51e-11,41;UBERON:0003080,9.51e-11,41;UBERON:0006240,9.51e-11,41;UBERON:0002346,7.61e-10,86;UBERON:0001893,9.91e-10,34;UBERON:0001869,1.25e-09,32;UBERON:0002619,4.37e-09,22;UBERON:0003075,5.79e-09,82;UBERON:0007284,5.79e-09,82;UBERON:0000178,1.00e-07,15;UBERON:0000179,1.00e-07,15;UBERON:0000463,1.00e-07,15;UBERON:0001950,1.12e-07,20;UBERON:0000956,2.12e-07,25;UBERON:0000203,2.12e-07,25;UBERON:0001017,2.54e-07,81;UBERON:0000955,3.31e-07,68;UBERON:0006238,3.31e-07,68;UBERON:0001016,4.72e-07,89;UBERON:0000125,9.67e-07,9;UBERON:0002308,9.67e-07,9 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0,2.00146596706261,0.446961094427288,0,5.06599756336621,0,0.783556884599516,0,0,0,0.263766978228454,0,0,1.34465029290355,0.602694528023977,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0.273748850145768,0.251085279189606,0,0.164201178899891,0.236132343941038,0.393364276848904,1.91914699048606,0.928896739896456,0,0.90361775633475,0.369754010166788,0.154934401160603,0.284338464974843,0.587200878669695,2.21598163412751,3.00816671205213,5.859293509328,0.223915474239924,0.971680998056939,0,0.726991193897824,0.377875943688809,0.242584061187816,0,1.6446715520873,0,3.16461631554365,1.2808035326455,0,1.03423704220986,3.22742341791913,0,1.31769637679823,1.63743690034707,0.224723484445085,2.14258724659632,0.641858054152187,0.639337125799041,0.659702600373432,1.59570926097305,0,0.580418477257168,0.56738522469114,1.24564449799115,1.50749199154046,2.60741459210101,0.217188844705117,2.42159801053347,1.10483290796269,0.632924774881769,0.422510572623884,0,0.209658645508376,0.336985893439485,0.150176892841506,0,0.285012743741249,0.39783335439818,0.365328307529268,5.27988733383968,1.09227722252426,3.55803701545422,2.98711155796555,1.20118796110804,1.72425731986345,0.661044872784862,1.90810750907073,11.384259382189,6.45960908308033,5.3518251937532,2.64342657158052,1.68152568894461,0.263384084775077,3.540775862049,169.780649507639,13.9809019319666,0,2.60737813306872,6.15482147455153,21.4309401248702,0.334231370655521,3.82987679717288,1.32920336750173,2.16643091012012,1.66518715643378,2.21100890851793,2.63100647365882,3.59255023121603,0.579606171470105,6.82118190545478,2.40786745280742,19.8617495229456,0.339928028092699,1.91610246800961,3.4362744548263,2.78321661221453,4.14135038621326,4.55758417699493,6.65316431113862,1.20460095262218,2.68771883424279,1.24930726552346,2.60454977248419,4.92676798152628,2.41928091869679,29.4184215361858,27.0821635260834,2.43806866313962,0.670700859703636,0,0.722878304769133,1.00267582127178,0.289693037921647,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.175669571386252,0.196468613246569,0,0,0,0,0.797747763113191,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0.732186172644509,0,0.81014194788176,0.17859945656816,0,0.112611480483322,1.53316637465883,0.949265659568129,0.366403487860815,0,0,0,0.496971951695318,0,0.662045904066094,1.43418310374407,0.709336764396714,0,0,1.2333377420858,0,0.134710672069688,0.163461903113459,0,0,0.468642863667593,0.312160076830321,0,0.448346041655403,0,0.323745888736263,0.140450806702248,0,0.368502951935304,0.206651562351531,0,0,0,0,0,0.125118519871964,0,0.877955241761676,0,0.300476117813194,0,0.358779271377724,0,0,0,0.103052529238439,0.257640540045629,0,0.168776332241266,0,0.757301322732344,0,0.161646056818812,1.06502877754984,0,0,0,0,0.286804595389004,0.243947412259191,0.265059536642971,0.232387885739037,0,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,1.47008711385542,6.33775174109154,1.96565443335525,6.49868897349544,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0.462985512576611,0.761016608938393,3.1608175918371,3.43394464837949,0.246217006087397,0,0.297262324577456,0,0.16798212819886,0,0,0.581267877027924,1.53353071666084,0,0.176096868026452,1.65862492432618,0.288239906833923,0.12624243342638,0.063497894292169,0,1.17217447210047,1.71072446022705,0.102827492703324,0,0,0.112131084345361,0,0,0,3.57656445851882,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0.871533458600294,0.299918973546171,1.2162378064119,1.50677127429638,4.21667878966063,0,0,0,0.144781306667579,0.205476322550383,0,0.784596007954691,1.37921532141349,15.7408129647448,12.3209314828558,0,0,2.31986643833309,0.670065061337395,0,2.24702107184155,14.9580729602012,1.24324654030811,0.12269149171914,0.500170521059677,0.271265023699736,0,0,0,0,0,4.5481500811197,5.17365356462525,0,0.184369168541703,0,0,0.343143423810856,0.620304078368662,7.11856862701436,6.40365346820666,0.909382714338778,3.32870879020994,2.11673205330776,0,0.306923946576125,0.280660094433074,0,1.02341449813341,0.64341568457443,0,0,0.177561725313127,0,0.519254429183621,0.581051892299796,0.120859449591622,0.802025881213139,0.368323955743585,0.114814448164607,0.182091168006717,0,0,0,0,1.46139224653261,0.105551628892876,0,0.510281115829547,0.431831832204279,0,0,0.501689773854853,0,0,0.895499018888713,0,0.522870902049801,0,0,0,2.16386124460217,0.732555718546747,0.165018999841176,0,1.30012049207304,0,0.096670718292122,0.308097234229289,0.307007349452259,0.275673144969061,0.429680979473094,0.290033387828457,0.0852266274161009,0,0,0.192190067365106,0.638063562472921,0.30347334256665,0.464845549297286,0.62962469366128,0,0,0,0,0.18532421910392,0.286249773483982,0.372158369359667,0,0.190630193923825,0.255897791311334,0,0.636406495851874,0.78494864019923,0,0.274537029736055,0.235624804691373,0,3.17020642346017,0.842516912477962,0,0,0,0,0.424216295861138,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| |||
|short_description=p1@SCARNA5 | |||
}} |
Revision as of 09:16, 21 January 2014
Short description: | p1@SCARNA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCARNA5_5end |
Coexpression cluster: | C673_CD4_Neutrophils_blood_CD8_skeletal_parietal_temporal |
Association with transcript: | 0bp_to_ENST00000516201, NR_003008, uc002vue.1_5end |
EntrezGene: | SCARNA5 |
HGNC: | 32561 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.39e-12 | 18 |
alpha-beta T cell | 2.39e-12 | 18 |
immature T cell | 2.39e-12 | 18 |
mature T cell | 2.39e-12 | 18 |
immature alpha-beta T cell | 2.39e-12 | 18 |
lymphoid lineage restricted progenitor cell | 1.26e-09 | 52 |
lymphocyte | 2.91e-09 | 53 |
common lymphoid progenitor | 2.91e-09 | 53 |
CD8-positive, alpha-beta T cell | 5.49e-09 | 11 |
T cell | 3.30e-08 | 25 |
pro-T cell | 3.30e-08 | 25 |
nongranular leukocyte | 8.92e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.64e-25 | 114 |
neural tube | 2.25e-13 | 56 |
neural rod | 2.25e-13 | 56 |
future spinal cord | 2.25e-13 | 56 |
neural keel | 2.25e-13 | 56 |
brain grey matter | 4.15e-12 | 34 |
gray matter | 4.15e-12 | 34 |
regional part of nervous system | 1.08e-11 | 53 |
regional part of brain | 1.08e-11 | 53 |
regional part of telencephalon | 8.47e-11 | 32 |
regional part of forebrain | 9.51e-11 | 41 |
forebrain | 9.51e-11 | 41 |
anterior neural tube | 9.51e-11 | 41 |
future forebrain | 9.51e-11 | 41 |
neurectoderm | 7.61e-10 | 86 |
telencephalon | 9.91e-10 | 34 |
cerebral hemisphere | 1.25e-09 | 32 |
regional part of cerebral cortex | 4.37e-09 | 22 |
neural plate | 5.79e-09 | 82 |
presumptive neural plate | 5.79e-09 | 82 |
blood | 1.00e-07 | 15 |
haemolymphatic fluid | 1.00e-07 | 15 |
organism substance | 1.00e-07 | 15 |
neocortex | 1.12e-07 | 20 |
cerebral cortex | 2.12e-07 | 25 |
pallium | 2.12e-07 | 25 |
central nervous system | 2.54e-07 | 81 |
brain | 3.31e-07 | 68 |
future brain | 3.31e-07 | 68 |
nervous system | 4.72e-07 | 89 |
neural nucleus | 9.67e-07 | 9 |
nucleus of brain | 9.67e-07 | 9 |