FFCP PHASE1:Hg19::chr2:109237654..109237689,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z907 | |||
|association_with_transcript=-12bp_to_NM_001193484,uc002tej.2_5end | |||
|coexpression_cluster_id=C854 | |||
|description=CAGE_peak_8_at_LIMS1_5end | |||
|id=chr2:109237654..109237689,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.82e-16!53;CL:0000051!1.82e-16!53;CL:0000838!5.88e-16!52;CL:0000084!1.87e-12!25;CL:0000827!1.87e-12!25;CL:0000791!1.90e-12!18;CL:0000789!1.90e-12!18;CL:0002420!1.90e-12!18;CL:0002419!1.90e-12!18;CL:0000790!1.90e-12!18;CL:0000625!6.02e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.70e-17;18!CL:0000789;4.70e-17;18!CL:0002419;4.70e-17;18!CL:0000084;5.53e-17;25!CL:0000625;8.97e-10;11!CL:0000624;9.48e-08;6!CL:0000542;2.19e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.50e-17,18;CL:0000789,1.50e-17,18;CL:0002420,1.50e-17,18;CL:0002419,1.50e-17,18;CL:0000790,1.50e-17,18;CL:0000084,2.89e-17,25;CL:0000827,2.89e-17,25;CL:0000542,4.37e-13,53;CL:0000051,4.37e-13,53;CL:0000838,2.69e-12,52;CL:0000625,5.22e-10,11;CL:0000624,5.10e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000790;4.70e-17;18!CL:0000051;2.19e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;5.05e-07;3!UBERON:0004054;5.05e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.04e-07,4;UBERON:0005058,1.04e-07,4;UBERON:0009113,1.04e-07,4;UBERON:0003295,1.04e-07,4;UBERON:0005562,1.04e-07,4;UBERON:0006947,4.38e-07,3;UBERON:0004054,4.38e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0,3.05653622991805,1.55991119954897,1.81034797021462,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0.46480320348181,0.426507697462265,0,1.10799081706375,0.200544447470142,0,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0,0.236482229888585,0.344745680736619,0,1.35426486594342,0,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0.329851300186716,0,0.426224750532694,0.290209238628584,0,0,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,0,0,0.800791974072025,0.574752439954483,0.661044872784862,0.954053754535364,0,0,0,0,1.12101712596307,0.263384084775077,1.96709770113833,0.393010762749165,3.90642848099067,6.35308682484577,1.62961133316795,3.31413464014313,1.94826728407911,10.5839934040915,4.41908861212256,6.20294904834139,6.22848886659536,6.66074862573511,7.1532641157933,3.12432018746985,1.93445012450094,3.18783394308558,3.85545064221357,1.87278579662799,2.09071047609954,8.0449633315272,7.2811893784365,7.90343124610049,9.1087089127021,2.22995790026868,1.95325036156926,3.8018081777935,2.86092726247768,4.73550461271348,2.49861453104692,2.60454977248419,2.46338399076314,0.403213486449465,0.267440195783507,0.434473211648397,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.196468613246569,0,0,0,0.174129737299267,0.132957960518865,0,0.571994910780128,0,0.198762407366705,0,0,0,0,0,0,0,0.35576626268671,0,0.402829317109147,0,0,0,0,0.17859945656816,0,0.225222960966644,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.545492241181669,1.14721838155602,0,0.132529768321485,0,0.414644220061482,0.504641701751257,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,1.64625428112938,0,0.502644862058154,1.29623823221941,0,0,0,0,0,0.144366447761074,0.462985512576611,0.380508304469197,0,0,0,0,0,0.93733833986777,1.34385702559088,0.425325291727159,0.358234090811393,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,1.34502172792233,0.591092280605782,0.862510299438069,0.898401253958239,0,1.30139853857622,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51505644408909,0.862856803274467,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,1.40354529212299,0.184161977871793,0,0,0,0,0.15403067420883,0,0,1.26661954671451,0,0,0.647747748306418,0,0.541892875087706,0.501689773854853,0.509752546090077,0,0.671624264166535,0.219259876645935,0,0,0,0,0.206082023295445,0,0,0.574265537996172,1.95018073810956,0,0,0,0,0,0,0,0,0,1.98341898433174,0,0.893288987462089,1.11273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15466535270614,0,1.08890984861323,0.188287601553558,0.43050537267123,1.68471475667626,0.443430153536676,1.83778720165568,0.507447609232169,3.0585488285695,0,2.62054953003568,1.64544909234478,1.29694662238543,2.16012574895246,0.79312517629427,0,0,0.980160863924127,1.11481905075431,0,0.213425530045242,5.10164072732231,0.399158742865633,0.383010740264733,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0.270455678475983,0,0,0.18714054040822,0,1.45632626099416,0,0,0,0.593929361665277,0.307160702099232,0,0,2.00355669041231,0,24.9127981591032,0.19924798825107,0.552567831062295,28.7203332553875,0,3.32328974744888,0,0.269605053441981,0.358042349351218,0,0.197286811273867,0,0,0,0,0,0,0,0,3.41380344856499,0.254253650292766,0.472775363535873,0.689486746482929,0,0.347249989866585,0,0,0,0,0,0,0,0.41827123283581,0.230850775511391,0,0,0,0.108647371922008,0,0,0,1.02193298195737,0,0.664846727600626,0.225595660617181,0,0.671286347903371,0.569261198172555,0.953619473882272,1.89898258075224,3.91758739581955,0.424059214301822,0.649165919226273,0,0.176915129006678,0,0,0,0,0.067401132980677,0.802577647298789,0,0.547364367646998,0.19566461893209,0.242780379534093,15.7833761139756,0,0.30607276163049,0,0,0,0,0,0,1.19472429772959,2.56148591426813,1.38674673013139,1.04135843001079,0.587954384486266,0.261177619741208,2.79562669187248,0,0,0,0,1.26085721434945,0.0882561266915003,0,0.137041924646751,0.397429223405979,0,0.391102765469606,0.240476460754601,0,0,0.288180834308212,8.36117152011184,0,0,0.124252535565433,2.12124631155116,1.08723364858891,1.77824838730966,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,1.47641222272123,0.508039992394707,0,0,0.803765742325096,0.412618309791701,0.415440338029185,0.899895566206002,0,0.121499113316049,0.335434687599266,1.57611414598396,0.367182116944987,0.105600336519406,0,0,0,0,2.28841683889275,0,0,0,0,0.082092520749339,0,0,0,0,0.258565912723101,0,0,2.11444506695002,2.56289790162467,4.87333345808964,2.48543433208317,0.496166021811951,4.74267916555066,1.46151118057075,0.638341257770182,0,0,0,0,0,0.8860681799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| |||
|short_description=p8@LIMS1 | |||
}} |
Revision as of 04:51, 21 January 2014
Short description: | p8@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LIMS1_5end |
Coexpression cluster: | C854_argyrophil_CD4_anaplastic_smallcell_nonsmall_seminal_CD8 |
Association with transcript: | -12bp_to_NM_001193484, uc002tej.2_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | B7Z907 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.50e-17 | 18 |
alpha-beta T cell | 1.50e-17 | 18 |
immature T cell | 1.50e-17 | 18 |
mature T cell | 1.50e-17 | 18 |
immature alpha-beta T cell | 1.50e-17 | 18 |
T cell | 2.89e-17 | 25 |
pro-T cell | 2.89e-17 | 25 |
lymphocyte | 4.37e-13 | 53 |
common lymphoid progenitor | 4.37e-13 | 53 |
lymphoid lineage restricted progenitor cell | 2.69e-12 | 52 |
CD8-positive, alpha-beta T cell | 5.22e-10 | 11 |
CD4-positive, alpha-beta T cell | 5.10e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.04e-07 | 4 |
hemolymphoid system gland | 1.04e-07 | 4 |
thymic region | 1.04e-07 | 4 |
pharyngeal gland | 1.04e-07 | 4 |
thymus primordium | 1.04e-07 | 4 |
male genital duct | 4.38e-07 | 3 |
internal male genitalia | 4.38e-07 | 3 |