FFCP PHASE1:Hg19::chr2:29337097..29337111,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79745 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26108 | |||
|TSSclassifier=not | |||
|UniProt=A8K6D0,Q8N3C7 | |||
|association_with_transcript=235bp_to_ENST00000402240,ENST00000404424,uc010ezm.1_5end | |||
|coexpression_cluster_id=C92 | |||
|description=CAGE_peak_10_at_CLIP4_5end | |||
|id=chr2:29337097..29337111,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.66e-46!42;CL:0000860!6.06e-42!45;CL:0002194!3.29e-36!63;CL:0000576!3.29e-36!63;CL:0000040!3.29e-36!63;CL:0000559!3.29e-36!63;CL:0002009!1.38e-34!65;CL:0000766!7.37e-34!76;CL:0000839!1.72e-32!70;CL:0000557!8.48e-32!71;CL:0000763!1.68e-17!112;CL:0000049!1.68e-17!112;CL:0002087!1.08e-16!119;CL:0000738!3.93e-15!140;CL:0002031!1.41e-14!124;CL:0002393!2.18e-12!9;CL:0002397!2.18e-12!9;CL:0000063!1.05e-10!578;CL:0000037!2.42e-09!172;CL:0000566!2.42e-09!172;CL:0002032!2.95e-09!165;CL:0000837!2.95e-09!165;CL:0002076!3.30e-08!43;CL:0000988!4.98e-08!182;CL:0000012!3.99e-07!682;CL:0000548!7.13e-07!679;CL:0000004!7.13e-07!679;CL:0000255!7.13e-07!679;CL:0000223!7.83e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.47e-37;33!CL:0002057;1.47e-37;33!CL:0000576;7.19e-34;48!CL:0000473;2.64e-32;39!CL:0000234;2.64e-32;39!CL:0000766;1.22e-21;69!CL:0000875;1.98e-16;3!CL:0002396;1.98e-16;3!CL:0000767;2.95e-15;3!CL:0002393;1.54e-13;6!CL:0002397;1.54e-13;6!CL:0000763;2.32e-13;100!CL:0002087;8.42e-09;104!CL:0000738;4.39e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.31e-66,42;CL:0002057,6.31e-66,42;CL:0000473,5.10e-62,48;CL:0000234,5.10e-62,48;CL:0000766,2.88e-49,72;CL:0002194,1.97e-48,59;CL:0000576,1.97e-48,59;CL:0000040,1.97e-48,59;CL:0000559,1.97e-48,59;CL:0002009,1.11e-46,61;CL:0000839,9.39e-43,66;CL:0000557,4.88e-42,67;CL:0000763,7.24e-31,108;CL:0000049,7.24e-31,108;CL:0002393,1.02e-26,9;CL:0002397,1.02e-26,9;CL:0000738,3.07e-23,136;CL:0002087,3.41e-22,115;CL:0002031,4.94e-21,120;CL:0002032,1.17e-18,161;CL:0000837,1.17e-18,161;CL:0000037,1.28e-17,168;CL:0000875,1.99e-16,3;CL:0002396,1.99e-16,3;CL:0000988,2.10e-16,177;CL:0000767,2.06e-15,3 | |||
|ontology_enrichment_development_v019=CL:0002057;6.78e-50;42!CL:0000049;1.62e-11;108 | |||
|ontology_enrichment_disease=DOID:305!3.60e-14!106;DOID:1749!6.78e-14!14;DOID:0050687!2.81e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.18e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.29e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.29e-26!80;UBERON:0001474!2.12e-23!86;UBERON:0002390!3.01e-20!102;UBERON:0003061!3.01e-20!102;UBERON:0004765!1.80e-18!101;UBERON:0001434!1.80e-18!101;UBERON:0002193!6.62e-18!112;UBERON:0002405!7.97e-17!115;UBERON:0000062!8.35e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;6.35e-07;7!UBERON:0001173;6.35e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.97e-36,76;UBERON:0001474,2.27e-33,82;UBERON:0004765,6.47e-30,90;UBERON:0002405,9.02e-29,93;UBERON:0002390,5.09e-27,98;UBERON:0003061,5.09e-27,98;UBERON:0001434,2.29e-26,100;UBERON:0002193,5.35e-24,108;UBERON:0002204,1.64e-13,167;UBERON:0003081,4.08e-10,203 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,2.36018566109342,2.30297638858328,1.85779347979291,0,0.30120591877825,0,0,0,0,1.10799081706375,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0.257575567634187,1.59938062657521,0.755751887377619,1.4555043671269,1.62700325833979,0.822335776043652,0.619412741790207,0.575384784644301,1.0246428261164,1.18241114944293,1.03423704220986,2.5819387343353,4.06279459783025,2.25890807451126,0.818718450173537,2.24723484445085,1.22433556948361,0.641858054152187,1.91801137739712,2.96866170168044,1.19678194572979,0.426224750532694,1.45104619314292,0,0.622822248995575,1.25624332628372,0,2.17188844705117,0.605399502633369,2.20966581592539,0.949387162322653,4.43636101255078,2.12604299965044,3.98351426465914,0.44931452458598,0.600707571366025,0.32145117339416,7.98035682475496,5.37075028437543,6.57590953552682,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0.445893486866185,0,0.16798212819886,0,0,0.290633938513962,0,0,0,0,0,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,2.43247561282381,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0.248107807818777,0.460385919864187,0,0.384417447767103,0,0,0,0,0,0,0,0,0,0,0.276242966807689,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.256450125116389,0,0.650756789328606,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.495854746082934,0,0.510450849978337,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0.111308705022906,0,0,0,0,0,1.43176155503017,0,0.311039587661807,3.77447074818773,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.762760950878299,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.274792780205587,0,0,0,0,0,0,0,0,0,0.210998064528027,0.652931232636591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664653872707185,0.330991955875499,0,0,0.853828638089378,0,0.173559738335131,1.56787835863004,0.957651272384428,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.782205530939212,1.76349404553374,0,2.99714414373195,0,0,0,0.14405479798815,1.73953549791606,0.235694034616795,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,0,0.427149650270779,0,0.828478110694391,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0.915360273587694,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0.406870733204662,0,0.214821114084977,0.464033759878494,0,0,0,0,0,0.192619830407303,0,0.260994291965212,0,0,0.489473409012935,0,0,0,0,0.38582807654183,0,0,0.345430341731199,0.303859956177382,0,0,0,0,0,0,1.47918486351039,0,0,0,0.567515953566836,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0.707818340086442,0.366857197043358,0.577628330751691,0,0,0,0,0,0,0,0,3.10497781055795,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0.827356886187777,0.111231401892069,0,0,0,0,0,0,0,0.47404083519818,0,0,0,0.207216164163037,0,0,0,0.118332000730565,0.170426809518315,0,0.9164274741762,1.86123831398592,0.955538938977433,0.111855431797792,0.392600934460972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96409332466223,0.352894871715692,0.962896400270019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0.0636471582781649,0,0.435433495793923,0,0.336760265072938,0.0717222053926763,0,0.325613074443898,0.320182037633146,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p10@CLIP4 | |||
}} |
Revision as of 02:24, 21 January 2014
Short description: | p10@CLIP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_CLIP4_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 235bp_to_ENST00000402240, ENST00000404424, uc010ezm.1_5end |
EntrezGene: | CLIP4 |
HGNC: | 26108 |
UniProt: | A8K6D0Q8N3C7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.31e-66 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.31e-66 | 42 |
defensive cell | 5.10e-62 | 48 |
phagocyte | 5.10e-62 | 48 |
myeloid leukocyte | 2.88e-49 | 72 |
monopoietic cell | 1.97e-48 | 59 |
monocyte | 1.97e-48 | 59 |
monoblast | 1.97e-48 | 59 |
promonocyte | 1.97e-48 | 59 |
macrophage dendritic cell progenitor | 1.11e-46 | 61 |
myeloid lineage restricted progenitor cell | 9.39e-43 | 66 |
granulocyte monocyte progenitor cell | 4.88e-42 | 67 |
myeloid cell | 7.24e-31 | 108 |
common myeloid progenitor | 7.24e-31 | 108 |
intermediate monocyte | 1.02e-26 | 9 |
CD14-positive, CD16-positive monocyte | 1.02e-26 | 9 |
leukocyte | 3.07e-23 | 136 |
nongranular leukocyte | 3.41e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 4.94e-21 | 120 |
hematopoietic oligopotent progenitor cell | 1.17e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-18 | 161 |
hematopoietic stem cell | 1.28e-17 | 168 |
non-classical monocyte | 1.99e-16 | 3 |
CD14-low, CD16-positive monocyte | 1.99e-16 | 3 |
hematopoietic cell | 2.10e-16 | 177 |
basophil | 2.06e-15 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.97e-36 | 76 |
bone element | 2.27e-33 | 82 |
skeletal element | 6.47e-30 | 90 |
immune system | 9.02e-29 | 93 |
hematopoietic system | 5.09e-27 | 98 |
blood island | 5.09e-27 | 98 |
skeletal system | 2.29e-26 | 100 |
hemolymphoid system | 5.35e-24 | 108 |
musculoskeletal system | 1.64e-13 | 167 |
lateral plate mesoderm | 4.08e-10 | 203 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.29e-08 | 14 |