FFCP PHASE1:Hg19::chr19:52264449..52264452,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2358 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3827 | |||
|TSSclassifier=strong | |||
|UniProt=P25090 | |||
|association_with_transcript=0bp_to_NM_001005738,uc002pxr.2,uc002pxs.3_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_5_at_FPR2_5end | |||
|id=chr19:52264449..52264452,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.97e-72!42;CL:0000860!3.97e-66!45;CL:0000766!5.99e-51!76;CL:0002009!3.17e-50!65;CL:0002194!8.69e-50!63;CL:0000576!8.69e-50!63;CL:0000040!8.69e-50!63;CL:0000559!8.69e-50!63;CL:0000557!7.67e-45!71;CL:0000839!1.73e-43!70;CL:0000763!1.19e-39!112;CL:0000049!1.19e-39!112;CL:0000738!1.32e-29!140;CL:0002087!6.55e-28!119;CL:0000037!7.88e-27!172;CL:0000566!7.88e-27!172;CL:0002032!2.32e-26!165;CL:0000837!2.32e-26!165;CL:0002031!5.99e-25!124;CL:0000988!2.07e-24!182;CL:0002393!4.55e-15!9;CL:0002397!4.55e-15!9;CL:0000094!9.52e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.50e-85;33!CL:0002057;4.50e-85;33!CL:0000473;1.24e-58;39!CL:0000234;1.24e-58;39!CL:0000576;3.68e-39;48!CL:0000766;2.79e-24;69!CL:0000763;2.49e-16;100!CL:0000771;3.06e-11;2!CL:0000094;2.00e-10;8!CL:0002087;2.31e-10;104!CL:0000738;4.92e-09;136!CL:0000775;8.54e-08;3!CL:0000081;1.39e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.90e-74,42;CL:0002057,8.90e-74,42;CL:0000473,8.58e-64,48;CL:0000234,8.58e-64,48;CL:0000766,1.08e-54,72;CL:0002194,8.23e-50,59;CL:0000576,8.23e-50,59;CL:0000040,8.23e-50,59;CL:0000559,8.23e-50,59;CL:0002009,5.24e-48,61;CL:0000839,5.74e-44,66;CL:0000557,3.13e-43,67;CL:0000763,1.42e-39,108;CL:0000049,1.42e-39,108;CL:0000738,5.91e-26,136;CL:0002032,2.69e-24,161;CL:0000837,2.69e-24,161;CL:0000037,5.39e-23,168;CL:0002087,8.26e-23,115;CL:0002031,1.29e-21,120;CL:0000988,1.80e-21,177;CL:0000771,3.14e-11,2;CL:0000094,2.02e-10,8;CL:0000775,8.55e-08,3;CL:0000081,1.40e-07,11;CL:0000134,3.08e-07,354;CL:0002320,5.79e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.55e-52;42!CL:0000049;4.87e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.05e-53!102;UBERON:0003061!1.05e-53!102;UBERON:0002193!2.27e-49!112;UBERON:0002371!2.81e-38!80;UBERON:0001474!1.14e-34!86;UBERON:0002405!7.95e-31!115;UBERON:0004765!1.56e-27!101;UBERON:0001434!1.56e-27!101;UBERON:0003081!5.43e-19!216;UBERON:0002204!3.14e-13!167;UBERON:0000178!9.72e-13!15;UBERON:0000179!9.72e-13!15;UBERON:0000463!9.72e-13!15;UBERON:0007023!8.00e-10!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.72e-20;15!UBERON:0000179;3.72e-20;15!UBERON:0000463;3.72e-20;15!UBERON:0002390;2.82e-10;32!UBERON:0002193;1.34e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.27e-54,98;UBERON:0003061,4.27e-54,98;UBERON:0002193,2.06e-51,108;UBERON:0002371,1.84e-37,76;UBERON:0002405,1.23e-34,93;UBERON:0001474,2.61e-34,82;UBERON:0004765,9.36e-31,90;UBERON:0001434,4.19e-27,100;UBERON:0003081,2.10e-22,203;UBERON:0000178,3.68e-20,15;UBERON:0000179,3.68e-20,15;UBERON:0000463,3.68e-20,15;UBERON:0002204,7.06e-14,167;UBERON:0000926,8.83e-12,315;UBERON:0004120,8.83e-12,315;UBERON:0006603,8.83e-12,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,0,0,0,1.59938062657521,1.51150377475524,1.21292030593908,3.0215774797739,0.411167888021826,0.929119112685311,4.02769349251011,1.2808035326455,3.54723344832878,1.72372840368309,0.645484683583826,0,4.51781614902251,0.272906150057846,1.79778787556068,3.97909060082173,2.88836124368484,2.55734850319616,2.63881040149373,0.797854630486527,2.98357325372886,5.22376629531451,1.13477044938228,3.73693349397345,1.50749199154046,1.0429658368404,1.52032191293582,4.84319602106695,2.57794345191295,3.79754864929061,0.422510572623884,0.425208599930087,0.209658645508376,2.69588714751588,2.10247649978109,2.73233497385036,0.285012743741249,0.19891667719909,0.365328307529268,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602300476311091,0,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.495845917967,27.1446184903828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0.702012795417713,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9761685747324,0,31.0811635077027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,14.7159806677329,13.7634697285628,7.97506062043828,7.86164859010704,8.63860773481008,21.3996192693597,11.3406601820004,7.9312517629427,0,0,0,0,0,0,0,0,0.766021480529467,0,0,0,0,1.72347885350326,0,0,0,0,0,3.09154810280188,0,0,0,0.390776190804081,0,0,0,0,0,0,0.146508179271894,0,0.445773537109913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.427149650270779,0.628817220398664,0,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,1.97366227757693,0.837952543656503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0.103432995861895,0,0,0.0645889098360061,0.186224142887574,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@FPR2 | |||
}} |
Revision as of 00:51, 21 January 2014
Short description: | p5@FPR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_FPR2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_NM_001005738, uc002pxr.2, uc002pxs.3_5end |
EntrezGene: | FPR2 |
HGNC: | 3827 |
UniProt: | P25090 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.90e-74 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.90e-74 | 42 |
defensive cell | 8.58e-64 | 48 |
phagocyte | 8.58e-64 | 48 |
myeloid leukocyte | 1.08e-54 | 72 |
monopoietic cell | 8.23e-50 | 59 |
monocyte | 8.23e-50 | 59 |
monoblast | 8.23e-50 | 59 |
promonocyte | 8.23e-50 | 59 |
macrophage dendritic cell progenitor | 5.24e-48 | 61 |
myeloid lineage restricted progenitor cell | 5.74e-44 | 66 |
granulocyte monocyte progenitor cell | 3.13e-43 | 67 |
myeloid cell | 1.42e-39 | 108 |
common myeloid progenitor | 1.42e-39 | 108 |
leukocyte | 5.91e-26 | 136 |
hematopoietic oligopotent progenitor cell | 2.69e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.69e-24 | 161 |
hematopoietic stem cell | 5.39e-23 | 168 |
nongranular leukocyte | 8.26e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 1.29e-21 | 120 |
hematopoietic cell | 1.80e-21 | 177 |
eosinophil | 3.14e-11 | 2 |
granulocyte | 2.02e-10 | 8 |
neutrophil | 8.55e-08 | 3 |
blood cell | 1.40e-07 | 11 |
mesenchymal cell | 3.08e-07 | 354 |
connective tissue cell | 5.79e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.27e-54 | 98 |
blood island | 4.27e-54 | 98 |
hemolymphoid system | 2.06e-51 | 108 |
bone marrow | 1.84e-37 | 76 |
immune system | 1.23e-34 | 93 |
bone element | 2.61e-34 | 82 |
skeletal element | 9.36e-31 | 90 |
skeletal system | 4.19e-27 | 100 |
lateral plate mesoderm | 2.10e-22 | 203 |
blood | 3.68e-20 | 15 |
haemolymphatic fluid | 3.68e-20 | 15 |
organism substance | 3.68e-20 | 15 |
musculoskeletal system | 7.06e-14 | 167 |
mesoderm | 8.83e-12 | 315 |
mesoderm-derived structure | 8.83e-12 | 315 |
presumptive mesoderm | 8.83e-12 | 315 |