FFCP PHASE1:Hg19::chr19:42400678..42400701,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9138 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=681 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-391bp_to_uc002osd.2_5end | |||
|coexpression_cluster_id=C1823 | |||
|description=CAGE_peak_4_at_ARHGEF1_5end | |||
|id=chr19:42400678..42400701,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.34e-20!172;CL:0000566!4.34e-20!172;CL:0002032!1.76e-19!165;CL:0000837!1.76e-19!165;CL:0000738!1.82e-18!140;CL:0000988!3.09e-18!182;CL:0002087!7.39e-17!119;CL:0002031!6.20e-15!124;CL:0000542!1.72e-13!53;CL:0000051!1.72e-13!53;CL:0000838!4.05e-13!52;CL:0000084!5.55e-08!25;CL:0000827!5.55e-08!25;CL:0000763!5.79e-08!112;CL:0000049!5.79e-08!112;CL:0000791!7.81e-08!18;CL:0000789!7.81e-08!18;CL:0002420!7.81e-08!18;CL:0002419!7.81e-08!18;CL:0000790!7.81e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.91e-10;25!CL:0000542;3.24e-09;53!CL:0000791;3.55e-09;18!CL:0000789;3.55e-09;18!CL:0002419;3.55e-09;18!CL:0002087;9.33e-08;104!CL:0000624;4.85e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.68e-23,168;CL:0002087,1.92e-22,115;CL:0000738,6.37e-22,136;CL:0002032,1.31e-21,161;CL:0000837,1.31e-21,161;CL:0000988,5.40e-21,177;CL:0002031,1.30e-17,120;CL:0000542,3.54e-16,53;CL:0000051,3.54e-16,53;CL:0000838,1.29e-15,52;CL:0000084,2.55e-10,25;CL:0000827,2.55e-10,25;CL:0000791,2.83e-09,18;CL:0000789,2.83e-09,18;CL:0002420,2.83e-09,18;CL:0002419,2.83e-09,18;CL:0000790,2.83e-09,18;CL:0000763,4.95e-08,108;CL:0000049,4.95e-08,108;CL:0000860,9.58e-08,42;CL:0002057,9.58e-08,42;CL:0000766,3.81e-07,72;CL:0000624,5.34e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;3.24e-09;53!CL:0000790;3.55e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.12e-12!115;UBERON:0000178!4.51e-08!15;UBERON:0000179!4.51e-08!15;UBERON:0000463!4.51e-08!15;UBERON:0002390!1.94e-07!102;UBERON:0003061!1.94e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.17e-10;15!UBERON:0000179;4.17e-10;15!UBERON:0000463;4.17e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.80e-10,114;UBERON:0000178,4.20e-10,15;UBERON:0000179,4.20e-10,15;UBERON:0000463,4.20e-10,15;UBERON:0002390,2.48e-09,98;UBERON:0003061,2.48e-09,98;UBERON:0002193,2.08e-08,108 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0,0,0,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0.286235987131057,0.136874425072884,0.376627918784408,1.68109492645493,0.903106483949403,1.41679406364623,0.393364276848904,0.767658796194425,1.54816123316076,0,0,0,2.01414721508784,2.84338464974843,0,3.32397245119126,2.4065333696417,2.82114131930607,1.56740831967947,2.26725566213286,1.80302897343931,4.07115068582781,1.88937971844405,0.970336244751265,2.55671940596253,2.05583944010913,1.54853185447552,1.7261543539329,0.512321413058201,0,0.344745680736619,0,0,2.25890807451126,1.91034305040492,0.224723484445085,0.918251677112708,0.641858054152187,0,1.31940520074686,3.78980949481101,1.27867425159808,0.290209238628584,0,1.24564449799115,0.75374599577023,1.0429658368404,1.52032191293582,2.42159801053347,0,0.316462387440884,1.26753171787165,2.55125159958052,1.04829322754188,1.57260083605093,3.00353785683013,1.92870704036496,1.71007646244749,2.58591680358817,1.27864907635244,0,0.546138611262131,0.889509253863555,0.853460445133014,0.800791974072025,2.29900975981793,0,1.90810750907073,7.39976859842283,2.93618594685469,3.44045905312706,0,0,1.05353633910031,4.52432471261816,6.28817220398664,6.16804496998528,3.67810289859492,4.88883399950386,4.73447805734733,1.94826728407911,4.67923918917729,4.12448270464772,3.32300841875432,7.04090045789041,12.8091319725675,10.9249851950298,16.772666269575,10.5013006758622,5.21645554323094,9.04548035288569,5.08327573370455,12.5442628565972,7.47841661803937,2.29932296161153,2.40539211837841,7.33757106856558,2.54852331459277,1.30216690771284,0.950452044448374,2.86092726247768,2.8157054453972,0,2.60454977248419,0.821127996921047,7.66105624253983,6.15112450302067,9.26876184849914,0,0,0,2.53007406669196,0,1.01392563272577,0,0,0.189069634328136,0,0.175669571386252,0.916853528483988,0.364295288292542,0,0,0.696518949197069,1.59549552622638,1.19245312152671,0,0.371457501329565,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.976248230192678,0.735326160691737,0,0.357198913136319,0,0.337834441449967,0,0,0,1.31780417436063,0,0,0.993943903390637,0.12663051166458,3.57504788195691,2.58152958673932,0.354668382198357,0,0,0.49333509683432,0,0.134710672069688,0.326923806226917,0,0,0,0.312160076830321,0,0.597794722207204,0.469737994575059,0.485618833104395,0.140450806702248,0.204154171254893,0.61417158655884,0.516628905878827,0,0.247266929278557,0,0,0.505008341862199,0.125118519871964,0,0,0,0,0.113432183160021,3.58779271377724,0.427114777637135,0,0.600182192168805,0.618315175430633,1.28820270022815,0.558350568994769,3.37552664482532,0.389748020644795,4.29137416214995,0.276149695926898,0.969876340912871,3.19508633264953,0.503760491138201,0,0.57978255948989,0.272746120590835,0.286804595389004,0.121973706129595,0.530119073285941,0.116193942869518,0.414644220061482,0.252320850875628,0.72995471815166,0,0.643240938192885,0,1.85747171212792,0,0.709840800239063,0.337169380156203,0.241011029883482,0.330881918197182,0.653638332277218,0.237270619111097,1.07865046528132,0.588664395376038,0.38474715694639,0,1.40241773803446,0,0,0,0.982827216677626,0.590789906681404,1.7658523976586,0.368965315629341,0.686271241194102,0.768251997860379,0,1.00528972411631,0.555530670951178,0,0,0,0.695582429850461,0.117408694235822,0,0.462985512576611,0.190254152234598,0,0,0.738651018262192,0.936017060556951,1.0404181360211,0,0.16798212819886,0.283550194484773,0.268675568108545,0,0,2.46331618947972,0.968532774145487,0.621984346622316,0.576479813667846,0.25248486685276,1.71444314588856,0,0,0,2.05654985406647,0.300343057843917,2.00078502841405,0.336393253036082,0,0.66004457238855,0,0,0,0,1.04007436911366,0,0,0.532844358032199,0.285955987316295,0,0,0,0.355391948742546,0,0.301439377059586,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0.144781306667579,0.61642896765115,0.716243852959582,0.896681151948218,6.10795356625974,4.52817907204986,5.77543663258868,0.254094624222463,1.30139853857622,0,0.502548796003046,0.637938751653163,11.9841123831549,14.9580729602012,2.07207756718018,0.12269149171914,0,0,5.40724239980099,2.14114786556594,1.89242898040722,1.52283839490527,0,0,0,0,0,0.434418072340414,0,0,5.99627275756373,3.45142721309787,5.01619521676188,0.303127571446259,0,0,0.248107807818777,1.07423381301644,0,0.256278298511402,0,0,0,0.308419387605311,0.177561725313127,0.410635780069046,0.519254429183621,0.697262270759755,0.120859449591622,0.40101294060657,0.368323955743585,0,0.546273504020151,0,0,0.231046011313244,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,0.254876273045038,0.831076008928724,0,0.438519753291869,0.261435451024901,0,0,0.325378394664303,0.103041011647722,0.457847324091717,0.330037999682352,0,0,0,0.193341436584244,0.154048617114644,0.15350367472613,0,0.107420244868274,0.580066775656914,0.170453254832202,0.712256285173899,0,0,5.87018477475087,0.4046311234222,0.464845549297286,2.20368642781448,0,0,0,0.869932992075073,0.18532421910392,0,0.744316738719335,0,0,0,0,0,0,0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| |||
|short_description=p4@ARHGEF1 | |||
}} |
Revision as of 23:32, 20 January 2014
Short description: | p4@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARHGEF1_5end |
Coexpression cluster: | C1823_acute_CD4_Neutrophils_thymus_Whole_CD8_duodenum |
Association with transcript: | -391bp_to_uc002osd.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.68e-23 | 168 |
nongranular leukocyte | 1.92e-22 | 115 |
leukocyte | 6.37e-22 | 136 |
hematopoietic oligopotent progenitor cell | 1.31e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.31e-21 | 161 |
hematopoietic cell | 5.40e-21 | 177 |
hematopoietic lineage restricted progenitor cell | 1.30e-17 | 120 |
lymphocyte | 3.54e-16 | 53 |
common lymphoid progenitor | 3.54e-16 | 53 |
lymphoid lineage restricted progenitor cell | 1.29e-15 | 52 |
T cell | 2.55e-10 | 25 |
pro-T cell | 2.55e-10 | 25 |
mature alpha-beta T cell | 2.83e-09 | 18 |
alpha-beta T cell | 2.83e-09 | 18 |
immature T cell | 2.83e-09 | 18 |
mature T cell | 2.83e-09 | 18 |
immature alpha-beta T cell | 2.83e-09 | 18 |
myeloid cell | 4.95e-08 | 108 |
common myeloid progenitor | 4.95e-08 | 108 |
classical monocyte | 9.58e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.58e-08 | 42 |
myeloid leukocyte | 3.81e-07 | 72 |
CD4-positive, alpha-beta T cell | 5.34e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.80e-10 | 114 |
blood | 4.20e-10 | 15 |
haemolymphatic fluid | 4.20e-10 | 15 |
organism substance | 4.20e-10 | 15 |
hematopoietic system | 2.48e-09 | 98 |
blood island | 2.48e-09 | 98 |
hemolymphoid system | 2.08e-08 | 108 |