FFCP PHASE1:Hg19::chr19:9250545..9250553,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:9250545..9250553,- | |||
|id=chr19:9250545..9250553,- | |||
|ontology_enrichment_celltype=CL:0000945!3.44e-09!24;CL:0000826!3.44e-09!24;CL:0000542!9.19e-08!53;CL:0000051!9.19e-08!53;CL:0000838!3.80e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0001014;2.74e-17;2!CL:0001016;2.74e-17;2!CL:0000945;1.46e-15;24!CL:0000840;1.03e-12;5!CL:0000037;1.02e-09;1!CL:0001024;1.02e-09;1!CL:0000946;2.65e-09;1!CL:0000817;2.65e-09;1!CL:0000785;2.65e-09;1!CL:1001319;2.65e-09;1!CL:1000600;2.65e-09;1!CL:0000819;2.65e-09;1!CL:0000786;2.65e-09;1!CL:0000990;1.21e-08;8!CL:0000453;1.91e-07;5!CL:0000451;3.73e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,7.44e-25,3;CL:0001014,1.76e-17,2;CL:0001016,1.76e-17,2;CL:0000785,3.98e-17,2;CL:0000955,3.98e-17,2;CL:0000818,3.98e-17,2;CL:0000954,3.98e-17,2;CL:0000816,3.98e-17,2;CL:0000945,1.31e-15,24;CL:0000826,1.31e-15,24;CL:0000840,5.66e-13,5;CL:0001029,5.66e-13,5;CL:0001024,1.03e-09,1;CL:0000946,1.43e-09,1;CL:0000786,1.43e-09,1;CL:0000980,1.43e-09,1;CL:1001319,2.55e-09,1;CL:1000600,2.55e-09,1;CL:0000819,2.77e-09,1;CL:0000990,8.15e-09,8;CL:0000037,5.01e-08,168;CL:0000453,1.60e-07,5;CL:0000988,1.75e-07,177;CL:0000451,2.71e-07,10;CL:0002032,3.15e-07,161;CL:0000837,3.15e-07,161;CL:0000838,8.72e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000954;6.98e-17;2 | |||
|ontology_enrichment_disease=DOID:162!9.44e-23!235;DOID:14566!2.04e-22!239;DOID:0050686!6.07e-16!137;DOID:305!2.89e-12!106;DOID:2531!1.06e-11!51;DOID:0060083!1.06e-11!51;DOID:0050687!2.06e-11!143;DOID:1240!3.69e-08!39;DOID:1749!8.44e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:0060058;4.23e-13;10!DOID:1036;1.05e-09;8!DOID:4960;2.65e-09;1!DOID:0060073;2.65e-09;1!DOID:0070004;2.65e-09;1!DOID:8675;2.65e-09;1!DOID:3112;2.65e-09;1!DOID:4362;2.76e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.04e-13,10;DOID:2531,2.05e-11,51;DOID:0060083,2.05e-11,51;DOID:1036,9.96e-10,8;DOID:3112,2.16e-09,1;DOID:0060073,2.77e-09,1;DOID:8675,2.77e-09,1;DOID:4960,3.25e-09,1;DOID:0070004,3.25e-09,1;DOID:0050686,1.71e-07,137;DOID:4362,3.14e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000344!1.03e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004645;2.65e-09;1!UBERON:0001256;2.65e-09;1!UBERON:0001259;2.65e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,2.55e-09,1;UBERON:0001256,2.55e-09,1;UBERON:0001259,2.55e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.236132343941038,0.393364276848904,1.15148819429164,0.154816123316076,0,0,0.369754010166788,1.16200800870452,2.55904618477359,2.05520307534393,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0,0,0,0,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0.790152254325231,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,1.90792499444274,0,0.74291500265913,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.447792613514241,0.290633938513962,0.383382679165211,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0.431255149719035,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328508624055237,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0.743212700502875,1.44269212976445,0.782560276832555,0.478278818186467,0,0,0.211673582723883,0,0,0.456469358066384,0,0,0,0.481764225311099,0.80719882876419,0.851692475380653,0.343505344755765,0,0,0.166849141711909,0.19538809540204,0.278406173895242,0,0,0,0,0,0,0,0.111443384277478,1.42068073403207,0,0,0,0,0,0,0,0.211125408127993,0,0.552567831062295,0,0.102268682502155,0.738508832766417,0,0.718946809178615,0,0,0,0,0,0,0,0,0,0.262379999988587,0,1.0241410345695,0,0.236387681767936,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,1.41620002574687,0,0,0.113942055847001,0,0.359030577639089,0,0,0,0,0,0.156980256395025,0,0,0,0.167821586975843,4.36433585265626,1.74830236878417,0,1.30586246527318,0.282706142867882,0.216388639742091,0,0,0,0.593042257361244,0,0.104421949505455,0,0,0,1.27718352450966,0,0.728341138602278,0,0,0,0,3.30711522711884,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0.391969589657511,1.13176968554523,0,0.687944129886466,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.240476460754601,0,0.799238438328521,0,0.229073192331831,0.857974989309823,0,0,0,0.135904206073614,0.732219924186332,0.305994652908965,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0.202210631562555,0.0984274815147488,0.76205998859206,0,0,0,0,0.83088067605837,2.0247650239635,1.5476039091159,0.0607495566580247,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,1.19730191562487,1.14929529049075,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0.197611631897944,1.21792598380896,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0.0620964029413835,0.276697269872462,0.124980407962107,0.606596470166591,0.570930667089935,0,0,0,0,0.233713309847224,0,0.189403005275089,0,0,0,0.151230923763239,0.310874401165561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0.303859956177382,0,0.779441235357554,0,0.163565394255844,0.327609848846413,0,0.422624246717254,0,0.853533837553127,1.20550485762571,0,0,0,0,0,0.107824811396682,0.943595651135378,0,0,0,0,0,0,0.0788617450012534,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.707818340086442,0.183428598521679,0.808679663052368,0,0,0.397832444232549,0,0,0,0,1.31017534008077,0.739280431085226,0,0,0,0,0,0,0,0.351742488719241,0.127762427639595,0.535701835878287,0,0,0,0,1.72850981333669,0,0.0679697329768317,0.131545547125698,0.118193840883968,0.333694205676207,0,0,0,0,0.215927591218621,0,0,0.158013611732727,0,0,0,0,0,0,0,0.236664001461131,0,0,0.68732060563215,0,0.955538938977433,0,0.098150233615243,0.243835849964539,0,0,0,0,0,0.994753875806841,0,0.33883824611688,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.599646935549574,0,1.05868461514708,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0.437062287854782,0,0,0,0.18378979906969,0,0,0,0,0,0,0.23806443146374,0.0645889098360061,0,0.672791175483681,0,0,0.217716747896961,0,0.0673520530145875,0,0,1.30245229777559,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:9250545..9250553,- | |||
}} |
Revision as of 21:09, 20 January 2014
Short description: | p@chr19:9250545..9250553, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:9250545..9250553, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 7.44e-25 | 3 |
CD1a-positive Langerhans cell | 1.76e-17 | 2 |
immature CD1a-positive Langerhans cell | 1.76e-17 | 2 |
mature B cell | 3.98e-17 | 2 |
pre-B-II cell | 3.98e-17 | 2 |
transitional stage B cell | 3.98e-17 | 2 |
small pre-B-II cell | 3.98e-17 | 2 |
immature B cell | 3.98e-17 | 2 |
lymphocyte of B lineage | 1.31e-15 | 24 |
pro-B cell | 1.31e-15 | 24 |
immature conventional dendritic cell | 5.66e-13 | 5 |
common dendritic progenitor | 5.66e-13 | 5 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.03e-09 | 1 |
antibody secreting cell | 1.43e-09 | 1 |
plasma cell | 1.43e-09 | 1 |
plasmablast | 1.43e-09 | 1 |
bladder cell | 2.55e-09 | 1 |
lower urinary tract cell | 2.55e-09 | 1 |
B-1 B cell | 2.77e-09 | 1 |
conventional dendritic cell | 8.15e-09 | 8 |
hematopoietic stem cell | 5.01e-08 | 168 |
Langerhans cell | 1.60e-07 | 5 |
hematopoietic cell | 1.75e-07 | 177 |
dendritic cell | 2.71e-07 | 10 |
hematopoietic oligopotent progenitor cell | 3.15e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.15e-07 | 161 |
lymphoid lineage restricted progenitor cell | 8.72e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 2.55e-09 | 1 |
wall of urinary bladder | 2.55e-09 | 1 |
mucosa of urinary bladder | 2.55e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.04e-13 | 10 |
hematologic cancer | 2.05e-11 | 51 |
immune system cancer | 2.05e-11 | 51 |
chronic leukemia | 9.96e-10 | 8 |
papillary adenocarcinoma | 2.16e-09 | 1 |
lymphatic system cancer | 2.77e-09 | 1 |
lymphosarcoma | 2.77e-09 | 1 |
bone marrow cancer | 3.25e-09 | 1 |
myeloma | 3.25e-09 | 1 |
organ system cancer | 1.71e-07 | 137 |
cervical cancer | 3.14e-07 | 5 |