FFCP PHASE1:Hg19::chr19:7733929..7733950,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56729 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20389 | |||
|TSSclassifier=strong | |||
|UniProt=Q9HD89 | |||
|association_with_transcript=-21bp_to_ENST00000221515,NM_001193374,NM_020415,uc002mhf.1,uc002mhg.1_5end | |||
|coexpression_cluster_id=C386 | |||
|description=CAGE_peak_1_at_RETN_5end | |||
|id=chr19:7733929..7733950,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.25e-55!42;CL:0000860!2.04e-50!45;CL:0000037!8.81e-46!172;CL:0000566!8.81e-46!172;CL:0002194!3.22e-44!63;CL:0000576!3.22e-44!63;CL:0000040!3.22e-44!63;CL:0000559!3.22e-44!63;CL:0002032!1.77e-43!165;CL:0000837!1.77e-43!165;CL:0000763!8.22e-43!112;CL:0000049!8.22e-43!112;CL:0000766!2.59e-42!76;CL:0002009!2.59e-42!65;CL:0002087!4.83e-42!119;CL:0000988!1.29e-41!182;CL:0000839!1.28e-39!70;CL:0000557!4.58e-39!71;CL:0000738!1.46e-38!140;CL:0002031!2.41e-36!124;CL:0002393!3.64e-12!9;CL:0002397!3.64e-12!9;CL:0000134!1.94e-08!358;CL:0002320!7.53e-08!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.89e-61;33!CL:0002057;1.89e-61;33!CL:0000473;9.39e-48;39!CL:0000234;9.39e-48;39!CL:0000576;1.34e-47;48!CL:0000766;5.16e-30;69!CL:0000763;6.49e-18;100!CL:0002087;6.03e-16;104!CL:0002393;4.40e-13;6!CL:0002397;4.40e-13;6!CL:0000738;9.02e-11;136!CL:0000988;2.18e-08;177!CL:0000767;6.17e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.27e-85,42;CL:0002057,9.27e-85,42;CL:0000473,2.12e-79,48;CL:0000234,2.12e-79,48;CL:0002194,1.78e-63,59;CL:0000576,1.78e-63,59;CL:0000040,1.78e-63,59;CL:0000559,1.78e-63,59;CL:0002009,5.66e-61,61;CL:0000766,6.99e-60,72;CL:0000557,5.63e-57,67;CL:0000839,2.25e-55,66;CL:0000763,3.51e-53,108;CL:0000049,3.51e-53,108;CL:0000037,1.76e-48,168;CL:0002087,1.47e-47,115;CL:0000988,4.79e-45,177;CL:0002032,7.57e-45,161;CL:0000837,7.57e-45,161;CL:0000738,2.12e-44,136;CL:0002031,1.23e-39,120;CL:0002393,6.19e-18,9;CL:0002397,6.19e-18,9;CL:0000134,3.27e-13,354;CL:0002320,1.30e-12,361;CL:0000219,1.63e-10,386;CL:0000048,5.28e-08,427;CL:0000034,1.14e-07,441;CL:0000723,1.16e-07,433;CL:0000767,6.11e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;2.33e-60;42!CL:0000049;6.17e-16;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.84e-49!102;UBERON:0003061!8.84e-49!102;UBERON:0002193!3.94e-45!112;UBERON:0002371!3.50e-34!80;UBERON:0001474!1.51e-30!86;UBERON:0002405!4.67e-27!115;UBERON:0004765!2.05e-23!101;UBERON:0001434!2.05e-23!101;UBERON:0003081!5.80e-14!216;UBERON:0000178!4.62e-12!15;UBERON:0000179!4.62e-12!15;UBERON:0000463!4.62e-12!15;UBERON:0007023!9.12e-11!115;UBERON:0002204!3.82e-09!167;UBERON:0002384!4.60e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.09e-18;15!UBERON:0000179;2.09e-18;15!UBERON:0000463;2.09e-18;15!UBERON:0002390;4.72e-14;32!UBERON:0002193;5.78e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.91e-70,98;UBERON:0003061,3.91e-70,98;UBERON:0002193,3.26e-64,108;UBERON:0002371,7.63e-51,76;UBERON:0002405,4.62e-47,93;UBERON:0001474,3.96e-46,82;UBERON:0004765,8.11e-41,90;UBERON:0001434,2.24e-35,100;UBERON:0003081,3.29e-27,203;UBERON:0000178,1.72e-18,15;UBERON:0000179,1.72e-18,15;UBERON:0000463,1.72e-18,15;UBERON:0002204,8.25e-17,167;UBERON:0000926,6.98e-13,315;UBERON:0004120,6.98e-13,315;UBERON:0006603,6.98e-13,315;UBERON:0002384,8.54e-12,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.65401409067589,6.52509976765262,7.58599004248772,0,0,0,0,0,1.17440175733939,8.86392653651004,9.02450013615638,6.07630438004385,1.11957737119962,0,0,10.9048679084674,8.69114670484262,13.3421233653299,13.248455103624,10.2791972005456,7.74265927237759,10.6446185159196,10.5025889676931,11.8241114944293,12.0660988257816,12.2642089880927,9.47985406160392,12.6122367493545,9.82462140208245,11.0114507378091,16.2224462956578,10.269728866435,12.1474053901818,5.60747210317417,10.5715738539465,8.52449501065388,9.57690487474327,9.07816359505824,9.34233373493363,11.0549412712967,8.86520961314342,10.8594422352558,9.08099253950053,9.57521853567668,12.0255707227536,12.2528066060926,8.2915676986367,14.4664465400779,20.4438108686621,11.1130900702715,14.3045772160401,8.26536956849621,1.9891667719909,4.01861138282195,0,0.546138611262131,0,6.40095333849761,0,0.574752439954483,0.661044872784862,0.954053754535364,0,0.587237189370939,0,0,0,1.31692042387539,0,0,0.411202997999018,0,0,0,0,0.222820913770347,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,1.27426165729639,1.30216690771284,0,2.86092726247768,1.53583933385302,2.49861453104692,3.78843603270427,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0,0,0.649094787309367,0.174129737299267,0.132957960518865,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23108503043699,0.234004265139238,2.22946743433092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.385029108839245,0,0,0,0.167516265334349,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75566460082641,5.82428342210265,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,7.10426652925037,4.58782324285425,17.659062802399,10.9586616710583,17.6885777427064,7.78167973431261,4.32025149790492,17.4487538784739,0,0,0,0,0,0,4.14508309094938,0,32.9389236627671,0,0.973865820823666,0,2.05411211129873,6.42387572669395,0,0,0,0.80719882876419,20.0147731714453,65.9530261931068,0,0,0,20.9065262080183,0,0,0,8.65987116794332,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0,14.3689855408164,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,85.8423704844187,1.09886179476517,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,2.78020950365347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,3.83239764200917,0,0,0,0,0.717873024576814,0,0,2.00854311697685,1.94832070211506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,1.10154635083496,0,0,0,0,5.95882773328889,0,0,0,0,0,0.246277562248017,0,0,0,9.27548222385549,0.129282956361551,0.13223260174269,0,0,2.24253566392159,0.943225830597996,2.89967338743037,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0.213383459388282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0.781514011233092,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0.0657727735628491,0,0,0,0,0,1.82631744101899,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,1.94284397223656,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0.4226557275834,0,2.6315497034359,12.1180829390325,0,0,0,0,2.92134555298607,0,0.430018749454354,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0.0757786982182394,0,0,0.20686599172379,0.426467963801962,0,0.387533459016037,2.60713800042603,0,0.190941474834495,0.202117188958219,0,0,0.134704106029175,0.286888821570705,0,0,0,0,0,0,0,0.813792356631477,0.665756774185513,0.201273793591026,0 | |||
|short_description=p1@RETN | |||
}} |
Revision as of 21:01, 20 January 2014
Short description: | p1@RETN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RETN_5end |
Coexpression cluster: | C386_chronic_acute_Hodgkin_NK_thymus_liver_blood |
Association with transcript: | -21bp_to_ENST00000221515, NM_001193374, NM_020415, uc002mhf.1, uc002mhg.1_5end |
EntrezGene: | RETN |
HGNC: | 20389 |
UniProt: | Q9HD89 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.91e-70 | 98 |
blood island | 3.91e-70 | 98 |
hemolymphoid system | 3.26e-64 | 108 |
bone marrow | 7.63e-51 | 76 |
immune system | 4.62e-47 | 93 |
bone element | 3.96e-46 | 82 |
skeletal element | 8.11e-41 | 90 |
skeletal system | 2.24e-35 | 100 |
lateral plate mesoderm | 3.29e-27 | 203 |
blood | 1.72e-18 | 15 |
haemolymphatic fluid | 1.72e-18 | 15 |
organism substance | 1.72e-18 | 15 |
musculoskeletal system | 8.25e-17 | 167 |
mesoderm | 6.98e-13 | 315 |
mesoderm-derived structure | 6.98e-13 | 315 |
presumptive mesoderm | 6.98e-13 | 315 |
connective tissue | 8.54e-12 | 371 |