FFCP PHASE1:Hg19::chr18:67872891..67872940,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25914 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18654 | |||
|TSSclassifier=strong | |||
|UniProt=Q86VV8,C9JTR3 | |||
|association_with_transcript=21bp_to_ENST00000255674,ENST00000437017,ENST00000454359,NM_173630,uc002lkp.2,uc002lkq.1,uc010xfb.1_5end | |||
|description=CAGE_peak_1_at_RTTN_5end | |||
|id=chr18:67872891..67872940,- | |||
|ontology_enrichment_celltype=CL:0000542!1.03e-20!53;CL:0000051!1.03e-20!53;CL:0000838!4.41e-20!52;CL:0000037!1.07e-12!172;CL:0000566!1.07e-12!172;CL:0000988!4.68e-11!182;CL:0000084!6.45e-11!25;CL:0000827!6.45e-11!25;CL:0002032!1.24e-10!165;CL:0000837!1.24e-10!165;CL:0000791!2.04e-09!18;CL:0000789!2.04e-09!18;CL:0002420!2.04e-09!18;CL:0002419!2.04e-09!18;CL:0000790!2.04e-09!18;CL:0000945!1.07e-08!24;CL:0000826!1.07e-08!24;CL:0000738!1.23e-07!140;CL:0002031!1.83e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.21e-12;53!CL:0000084;4.79e-11;25!CL:0000791;1.82e-09;18!CL:0000789;1.82e-09;18!CL:0002419;1.82e-09;18!CL:0000945;1.02e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.03e-20,53;CL:0000051,1.03e-20,53;CL:0000838,4.41e-20,52;CL:0000037,2.03e-12,168;CL:0000988,4.32e-11,177;CL:0000084,6.44e-11,25;CL:0000827,6.44e-11,25;CL:0002032,2.29e-10,161;CL:0000837,2.29e-10,161;CL:0000791,2.04e-09,18;CL:0000789,2.04e-09,18;CL:0002420,2.04e-09,18;CL:0002419,2.04e-09,18;CL:0000790,2.04e-09,18;CL:0000945,1.07e-08,24;CL:0000826,1.07e-08,24;CL:0000738,2.16e-07,136;CL:0002031,3.23e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000051;3.21e-12;53!CL:0000790;1.82e-09;18 | |||
|ontology_enrichment_disease=DOID:2531!8.48e-11!51;DOID:0060083!8.48e-11!51;DOID:1240!5.04e-09!39 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.74e-07;39!DOID:2531;4.14e-07;51!DOID:0060083;4.14e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,8.48e-11,51;DOID:0060083,8.48e-11,51;DOID:1240,5.04e-09,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.28e-10!94;UBERON:0001016!2.28e-10!94;UBERON:0001049!4.44e-10!57;UBERON:0005068!4.44e-10!57;UBERON:0006241!4.44e-10!57;UBERON:0007135!4.44e-10!57;UBERON:0001017!4.52e-10!82;UBERON:0005743!1.62e-09!86;UBERON:0000955!2.32e-09!69;UBERON:0006238!2.32e-09!69;UBERON:0007023!2.84e-09!115;UBERON:0002780!7.29e-08!41;UBERON:0001890!7.29e-08!41;UBERON:0006240!7.29e-08!41;UBERON:0002616!1.28e-07!59;UBERON:0003080!1.42e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.87e-11,89;UBERON:0001049,2.25e-10,56;UBERON:0005068,2.25e-10,56;UBERON:0006241,2.25e-10,56;UBERON:0007135,2.25e-10,56;UBERON:0001017,2.70e-10,81;UBERON:0000955,1.34e-09,68;UBERON:0006238,1.34e-09,68;UBERON:0000073,2.30e-09,53;UBERON:0002616,2.30e-09,53;UBERON:0007023,4.04e-09,114;UBERON:0002780,7.28e-08,41;UBERON:0001890,7.28e-08,41;UBERON:0003080,7.28e-08,41;UBERON:0006240,7.28e-08,41 | |||
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| |||
|short_description=p1@RTTN | |||
}} |
Revision as of 19:46, 20 January 2014
Short description: | p1@RTTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTTN_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000255674, ENST00000437017, ENST00000454359, NM_173630, uc002lkp.2, uc002lkq.1, uc010xfb.1_5end |
EntrezGene: | RTTN |
HGNC: | 18654 |
UniProt: | Q86VV8C9JTR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.03e-20 | 53 |
common lymphoid progenitor | 1.03e-20 | 53 |
lymphoid lineage restricted progenitor cell | 4.41e-20 | 52 |
hematopoietic stem cell | 2.03e-12 | 168 |
hematopoietic cell | 4.32e-11 | 177 |
T cell | 6.44e-11 | 25 |
pro-T cell | 6.44e-11 | 25 |
hematopoietic oligopotent progenitor cell | 2.29e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-10 | 161 |
mature alpha-beta T cell | 2.04e-09 | 18 |
alpha-beta T cell | 2.04e-09 | 18 |
immature T cell | 2.04e-09 | 18 |
mature T cell | 2.04e-09 | 18 |
immature alpha-beta T cell | 2.04e-09 | 18 |
lymphocyte of B lineage | 1.07e-08 | 24 |
pro-B cell | 1.07e-08 | 24 |
leukocyte | 2.16e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 3.23e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.87e-11 | 89 |
neural tube | 2.25e-10 | 56 |
neural rod | 2.25e-10 | 56 |
future spinal cord | 2.25e-10 | 56 |
neural keel | 2.25e-10 | 56 |
central nervous system | 2.70e-10 | 81 |
brain | 1.34e-09 | 68 |
future brain | 1.34e-09 | 68 |
regional part of nervous system | 2.30e-09 | 53 |
regional part of brain | 2.30e-09 | 53 |
adult organism | 4.04e-09 | 114 |
regional part of forebrain | 7.28e-08 | 41 |
forebrain | 7.28e-08 | 41 |
anterior neural tube | 7.28e-08 | 41 |
future forebrain | 7.28e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 8.48e-11 | 51 |
immune system cancer | 8.48e-11 | 51 |
leukemia | 5.04e-09 | 39 |