FFCP PHASE1:Hg19::chr18:21269527..21269555,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |||
|TSSclassifier=strong | |||
|UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | |||
|association_with_transcript=-6bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | |||
|description=CAGE_peak_4_at_LAMA3_5end | |||
|id=chr18:21269527..21269555,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.56e-17!254;CL:0000076!4.11e-10!62;CL:0002076!1.38e-08!43;CL:0000077!5.14e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.82e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.89e-13,253;CL:0002076,1.43e-10,42;CL:0000223,1.56e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0005795;2.75e-08;10 | |||
|ontology_enrichment_disease=DOID:305!9.81e-11!106;DOID:0050687!1.95e-07!143;DOID:1749!3.96e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.24e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.61e-11,106;DOID:0050687,3.80e-07,143;DOID:1749,5.18e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.01e-14!169;UBERON:0000925!4.01e-14!169;UBERON:0006595!4.01e-14!169;UBERON:0000481!4.30e-14!347;UBERON:0001007!1.85e-13!155;UBERON:0001555!1.85e-13!155;UBERON:0007026!1.85e-13!155;UBERON:0000064!5.47e-13!219;UBERON:0000062!1.33e-11!511;UBERON:0000161!4.77e-11!35;UBERON:0000477!5.41e-11!286;UBERON:0000467!6.28e-11!625;UBERON:0000480!9.39e-11!626;UBERON:0007023!2.03e-10!115;UBERON:0001004!3.47e-10!72;UBERON:0004921!4.53e-10!129;UBERON:0004185!4.53e-10!129;UBERON:0003064!6.30e-10!37;UBERON:0000468!1.11e-09!659;UBERON:0001008!2.07e-09!45;UBERON:0001046!2.37e-09!19;UBERON:0004111!2.95e-09!241;UBERON:0002050!4.17e-09!605;UBERON:0005423!4.17e-09!605;UBERON:0006554!4.87e-09!44;UBERON:0000922!5.20e-09!612;UBERON:0000923!9.11e-09!604;UBERON:0005291!9.11e-09!604;UBERON:0006598!9.11e-09!604;UBERON:0002532!9.11e-09!604;UBERON:0005157!1.32e-08!51;UBERON:0000077!1.96e-08!130;UBERON:0005156!2.80e-08!59;UBERON:0000990!2.80e-08!59;UBERON:0000162!4.09e-08!14;UBERON:0001353!4.09e-08!14;UBERON:0000163!4.09e-08!14;UBERON:0006866!4.09e-08!14;UBERON:0000164!4.09e-08!14;UBERON:0000931!4.09e-08!14;UBERON:0000483!4.58e-08!309;UBERON:0003104!1.03e-07!238;UBERON:0009142!1.03e-07!238;UBERON:0000065!1.04e-07!53;UBERON:0000119!1.41e-07!312;UBERON:0005153!1.85e-07!37;UBERON:0003937!1.96e-07!12;UBERON:0005399!1.96e-07!12;UBERON:0000475!2.04e-07!365;UBERON:0004122!3.86e-07!15;UBERON:0002367!4.28e-07!11;UBERON:0010147!4.28e-07!11;UBERON:0009846!4.28e-07!11;UBERON:0003353!4.28e-07!11;UBERON:0004902!4.28e-07!11;UBERON:0003820!4.28e-07!11;UBERON:0009847!4.28e-07!11;UBERON:0008947!9.30e-07!38;UBERON:0003258!9.30e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0004175;5.09e-08;21!UBERON:0003937;7.37e-08;12!UBERON:0005399;7.37e-08;12!UBERON:0003975;1.59e-07;18!UBERON:0002367;2.11e-07;11!UBERON:0010147;2.11e-07;11!UBERON:0000995;4.51e-07;17!UBERON:0005156;5.71e-07;59!UBERON:0000990;5.71e-07;59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.59e-12,160;UBERON:0000925,7.59e-12,160;UBERON:0006595,7.59e-12,160;UBERON:0001007,9.56e-12,145;UBERON:0001555,9.56e-12,145;UBERON:0007026,9.56e-12,145;UBERON:0005156,5.26e-11,59;UBERON:0000990,5.26e-11,59;UBERON:0001046,1.38e-10,19;UBERON:0003064,1.46e-10,28;UBERON:0000161,5.68e-10,36;UBERON:0004921,8.07e-10,118;UBERON:0000162,4.23e-09,14;UBERON:0001353,4.23e-09,14;UBERON:0000163,4.23e-09,14;UBERON:0006866,4.23e-09,14;UBERON:0000164,4.23e-09,14;UBERON:0000931,4.23e-09,14;UBERON:0001008,1.02e-08,48;UBERON:0004122,2.98e-08,15;UBERON:0006554,3.02e-08,47;UBERON:0003937,4.90e-08,12;UBERON:0005399,4.90e-08,12;UBERON:0005157,1.01e-07,47;UBERON:0004175,1.07e-07,25;UBERON:0001004,1.45e-07,74;UBERON:0002367,1.68e-07,11;UBERON:0010147,1.68e-07,11;UBERON:0009846,1.68e-07,11;UBERON:0003353,1.68e-07,11;UBERON:0004902,1.68e-07,11;UBERON:0003820,1.68e-07,11;UBERON:0009847,1.68e-07,11;UBERON:0005795,2.37e-07,22;UBERON:0003975,4.30e-07,22 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,4.66894479352867,16.7472280313383,0.218441372130172,0,0,1.32558950291166,0,0,0,0,0.123121058076788,0.408001382488506,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,3.614471025339,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,1.0843174571537,0,0.434539556882471,0,0.486634870302636,0,0,0,3.79839318943367,4.73583874780305,1.85392221392215,0,0,0,0,0,0,0.39752481473341,0,0,0,1.25849830862972,0.550236083880135,0.417989933073621,0.775250277507987,0.35576626268671,0.33472061276467,0.402829317109147,1.52054421143703,0.488124115096339,1.10298924103761,0.81014194788176,0.446498641420399,0.22452937262617,0.563057402416611,0,0,0.549605231791222,0,0,0.872188104285069,0,0,1.19168262731897,1.14734648299525,0.709336764396714,1.12135520028461,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0.624320153660641,0,0.448346041655403,0.23486899728753,0,0,0.204154171254893,0.737005903870608,0.206651562351531,0,1.23633464639278,0,0.718618141816238,0,0.125118519871964,0.277064115484183,1.31693286264251,0,4.6573798261045,0,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0,0,5.65761198865842,0,0,0.169560592310488,2.70565194428616,0.545492241181669,1.43402297694502,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.709840800239063,1.01150814046861,0.964044119533928,1.10293972732394,1.08939722046203,0.474541238222193,1.07865046528132,1.37355025587742,2.30848294167834,0,0,0,0,0,0,0.590789906681404,0,1.96781501668982,0.343135620597051,0.439001141634502,0,0.603173834469785,1.01847289674383,0,3.11980435583874,0,0,0,0.288732895522148,0.925971025153221,0.951270761172991,0,2.57545848628462,0.246217006087397,0,0.743155811443641,0,0,0,0.268675568108545,0.871901815541886,0,0,0,0,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0.531876233169741,1.04007436911366,0.514414748524284,0,1.0656887160644,0.285955987316295,0,0,0,0,0,7.53598442648965,0.871533458600294,6.59821741801577,0,0,0,0,0,2.85273810081437,0.144781306667579,3.6985738059069,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28767947683888,1.07057393278297,1.57702415033935,3.86566669475954,0,4.5481500811197,2.0694614258501,0,0,0.955719759148911,0,0,0,0.215714200818617,0,0.606255142892519,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.821271560138091,0,0.348631135379878,0.966875596732978,6.81721999031168,3.95948252424354,3.3296189967736,2.00300284807389,5.11385218341754,0.902399225814824,0.539107359730903,3.13739907670742,1.46139224653261,1.26661954671451,0,0,0.431831832204279,0,4.33514300070165,2.00675909541941,0.764628819135115,1.66215201785745,0.671624264166535,0,0,1.02580050046556,1.96808787419823,0.325378394664303,4.01859945426117,0.183138929636687,0.577566499444116,0,0,0,0.580024309752732,0.462145851343933,0.15350367472613,0.275673144969061,0.107420244868274,0.290033387828457,0.255679882248303,0.0890320356467374,1.65284915360978,2.49847087574638,2.16941611240793,2.12431339796655,0,0.62962469366128,0,0,0.532306030317022,0,0,0,0.372158369359667,0.316379424718726,0.762520775695299,0.255897791311334,0.42793898803392,0.636406495851874,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0.48763373908959,0.487426979262569,0,0.818999468447914,3.81794666275024,0,1.10273068709225,0,0,0.578775534266688,0,0.202910376962704,0.30982349809975,0,0,0.0982490410131212,0.35667105148125,0.354761064070598,0.211107635297664,0.658589785919804,1.13841952129715,0.349934720244983,1.25088746543166,4.02181365321472,1.08890984861323,4.0481834334015,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,1.92495971052672,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0.284136146806413,5.72986763370456,1.78178808499583,5.22173193568695,0,0.562677665642051,2.56010021552684,0,0.63337622438398,1.79323189425963,2.48655523978033,0,0,0,1.24415835064723,1.70749867179921,0,0,1.87422470710174,0,0,1.93866549219044,0.0927680981618513,0,1.04171104434093,0,5.07499702804355,5.23449862113298,0,0.236387681767936,0.689486746482929,0.291604613383254,1.21537496453305,0.885741385813839,0.964771509003264,0,0.221158519862449,0,0.219385397153973,0,8.6442721452734,6.07907042179997,1.13942055847001,0,0,0,1.27600463892768,0,0,0,0,0,0,0,0,0,0,2.53197677433632,0.489698424477443,1.13082457147153,0.216388639742091,1.99052386215701,1.23840590304675,2.4441205797345,0,0,0,0.943615861729479,2.40773294189637,0.234264445725339,0,2.73930466504926,0,0.394584402849391,2.41981432097328,0,1.0741718536843,2.70582154946087,2.90326935912292,0,1.323967823502,1.56966459203613,0,1.99226682220855,0,5.38035188838906,4.21367308881824,2.61177619741208,2.44617335538842,0,2.32215195093804,2.48503678093031,2.05288642633023,2.61870344518732,0,0.677942222341597,0.274083849293502,0.19871461170299,0.696418755514666,0.195551382734803,1.84365286578528,0.85381197895741,0,1.29681375438695,0,0,0.432164393964449,1.24252535565433,2.59263438078475,0.543616824294456,0.523014231561666,0.713987523454252,0,0.600420288709789,0.273810757783986,0,0.429765441419957,3.41753560563109,2.23425921017803,2.7499250881402,0.717873024576814,4.5926170114768,0.429226048136571,0.446342914883745,0.940568614814168,0,0,0,0,0,0,0,0,0.817220436669454,0,0,0,0,3.0952078182318,1.03274246318642,9.05673656518018,0.630445658393585,0.367182116944987,0.211200673038813,0.896436696664224,4.2221343410278,2.1440859791201,0,0,4.3439968140297,5.18532894720761,1.95952416065645,2.39460383124975,0.082092520749339,0.170388021785422,0.679872549120754,0,0,0.387848869084652,0.26446520348538,2.22412889249628,0.704815022316672,14.5230881092065,12.8907530181726,16.1553231585406,0,0,0,0.638341257770182,0,1.7548292581589,0.306345576763462,0,0,0,0.488105059607853,0.500763722825999,1.14681839138014,0.998361463831671,0.558867626472451,0,0.124980407962107,0,0,1.41159491818903,1.87333962322753,0.869526171664951,0,0,0,1.89403005275089,1.50940741051545,8.89811221596536,0.686520205190771,3.02461847526478,0,0,0,0,0.310525913752519,0,0,1.04349012362347,0.300515217994437,6.47368860686952,0,0,0.214821114084977,1.39210127963548,0.796191777397232,0,0,0,0,2.11881813448034,1.71553273099941,0.521988583930423,2.04035332961045,2.54674721756217,0.489473409012935,1.79088841081487,3.08801447160972,2.41212454536578,3.88716121080938,6.5590773012111,0.337884881306145,0.512483037175893,1.38172136692479,1.82315973706429,0.829550616910385,0,0,0,0,1.72041036127604,3.80361822045529,0,0,0,0,9.38940346284388,3.35710818526667,6.8428498603627,0,0,0.943595651135378,0.327628914576042,0,0,0.123935764259002,0,0,15.3780402752444,0,0.352675943690684,0.918736432059601,1.15612605173627,0,0.478901577171454,0.615349092722265,0,0.345786262321089,0.484426936895553,0,2.06110208852154,1.1796972334774,4.76914356156365,2.31051332300676,0,3.4517996303005,0.198916222116275,1.35378591028663,0.40341013740704,0,0,1.63771917510097,2.06998520703863,0.945526184657525,1.56215619722769,0.620060389503552,0.887821342714695,0.546974809018219,0.548257766857182,7.93937885422871,0.527613733078862,3.57734797390867,1.60710550763486,1.3451348888753,0,0.227662191351298,6.12046354122208,0,3.25827217931095,0.679697329768317,0.526182188502793,5.08233515801063,5.89526430027966,1.96232732126285,0.314231179832004,1.40136081656895,2.73947616152849,2.37520350340484,5.25526856675755,1.85839014859306,0,0,0,6.41369091784202,0.62164849248911,1.87790324803345,0,3.8720462293825,2.95830001826413,2.89725576181136,1.69354820076372,2.7492824225286,1.5510319283216,0,6.04019331708079,0,0.121917924982269,0,0.923965261706223,0,2.91426595835484,3.04121302500737,0,0.118920090777569,0.5647304101948,0,0,2.2380505851304,0.437119121007915,0,4.6578181133242,0,0.588925401344836,0.297046400327086,0.8453114551668,0.509781344063451,0.0939839179798536,0.128915775947154,0,1.2498775702396,2.11736923029415,2.48748236736422,3.65168194123259,1.37618785021362,0.143339583151451,0.157771562193185,0.271965960763659,0.872701380680755,1.0580536810308,1.48798007266701,2.31087814315709,1.29787968637137,0,0,0.253397002022874,0.203977659483963,0,0.0918948995348449,0,1.59135266258303,1.07185652062471,0.829169439458779,0.20686599172379,1.70587185520785,0.714193294391221,0.839655827868079,0.434523000071005,1.6819779387092,0.445530107947154,0.404234377916439,2.39488422686657,0.342233301085281,2.28996980249598,1.36272190246085,0.665320713092027,1.22104902916462,0.853818767021724,5.7921684686082,0.718601616852695,0,9.65707409044645,6.10344267473608,1.99727032255654,1.61019034872821,0 | |||
|short_description=p4@LAMA3 | |||
}} |
Revision as of 18:47, 20 January 2014
Short description: | p4@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAMA3_5end |
Coexpression cluster: | NA |
Association with transcript: | -6bp_to_ENST00000313654, ENST00000399516, ENST00000416669, ENST00000538801, NM_001127717, NM_198129, uc002kuq.2, uc002kur.2, uc010dlv.1_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q16787Q6VU67F5GWM0F5H8G3Q566Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.89e-13 | 253 |
endo-epithelial cell | 1.43e-10 | 42 |
endodermal cell | 1.56e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.61e-11 | 106 |
cell type cancer | 3.80e-07 | 143 |
squamous cell carcinoma | 5.18e-07 | 14 |